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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0225900 |
| Transcript ID | LotjaGi4g1v0225900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ and TAZ domain protein; TAIR: AT3G48360.1 BTB and TAZ domain protein 2; Swiss-Prot: sp|Q94BN0|BT2_ARATH BTB/POZ and TAZ domain-containing protein 2; TrEMBL-Plants: tr|D2KTV8|D2KTV8_LOTJA BTB/POZ domain-containing protein; Found in the gene: LotjaGi4g1v0225900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53518987..53523154) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATAATTAATTTCAAACTTTTATTTTGATCTTATGAAAATCACCAAAATTTTTTTTTTCTTTCATGCTTATAAAT AGGACGTGAGAGAGTATAATTTAGAGAAATATTTAAACTGGGGTAAAATTATGTAATAGTTGTAGGTAGGCTTTTGTTGA CTGGACTGAGGGAAAATGCGCCTATTAATAATAGTGCTTCTGAATGCAAAGCACACATCAAACACAATTACAACTCTCAG AAGCTGAACTTTCCGCGTTGGGTCGCAACCTCCCCCAGATATTAATTCTTCAAGATTCCCTTAAATAACCCAAACCATCC TCTGTTCTCACAATCATCATCTCCTTCAATTCCTCCCCAAACCACCGCAAAATGGATCCCCAAAGCGAACAAACCACCCG GGTCGAACCCGAACCCGATATCTTCATCCACACCTCCGATGGAACCCGCATTCCAGCACACTCAAACATTCTGGTAAATC TCCCAATTCAAACAAACCATTTCCATAATTCACTTTTATTTTCCATTAATTTCTAACTGAATTCATTGATTCTGAACAGG CTTCTATGTCACCGGTTTTGGAAAGTATGATAGACCGGCCGCGAAAACACCGGAGCTCCGAACGAATAATCCAAATCCAC GGCGTCCCCGGCGACGCCGTAACCGCATTCCTCACCTTCCTCTACTCCCGGCGCTGCACGGAGGACGAGATGGATCGCTA CGGCATGCACCTGCTTGCTCTCTCGCACGTCTACATGGTGCCGCACCTCAAACAGAGATGCACGAAAGGCCTATCGCAGC GCGTGAACACAGAAAACGTGGTGGACATGCTCCAACTGGCGCGTCTCTGCGACGCGCCGGATCTCCACCTCCGCTGCATG AACCACCTCACAAGAAACTTCAAAACGGTGGAGGAAACCGAAGGGTGGAGGTTTTTGACGAAACACGATCCGTGGTTGGA ACTCGAGGTGCTGCGGTTCATGGACGAGAGCGAGACGAGGAGGGAGAAGTCGCGGCGGAGCAGGGAGGTGCAGGGGCTGT ACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGATCACATTTGCACGGAAGGGTGCACCCTTGTGGGGCCACACCATGTG GAGGTTGATAGAAAGAGTGGGCCATGTAACAAGTTCGCCACGTGTCAGGGTGTGCAGCAGTTGATTCGGCACTATGCCAC GTGTACGAAGAGGATGGGTGGTGGGTGCTTGCGGTGCAAGCGAATGTGGCAGCTTTTCCGCCTCCATTCCTATGGTTGTG AACACGCTGATTCCTGCAACGTTCCTCTTTGCAGGTAAATCCCTCAATCTCACATTTAATTCACGTGCATAATTAATTAA TAATTAAACTTCTAATTTTATTATTGAAATATATGAAGCAAAAATAGTATCATATTTGTGAATTAAGTCTCCGAATGATA ACTCAAGTGGTAAGAGTTAGATAATACGTGGGTTGAGCGGGGAGGTCAAGATCAAACCATGAAAAATGTAATATATTTTT CCGATCTACCAAAAAATACCTCTGAATTGAATTGGAATGGTTATTCAATAATAATGATAATATTAGGAATGGGGAAAATA ACATGAAGTATTTTAATAAGATGTAAATATAATATATGGGCTTTATCTCTTTGTTTTTTGTTACAAGCTTTATCACTTAA GCTACCTAGTACCTATGATCTTTAAAATATATGTAGTTGGGCACTATGTTTAAATATCTTACTACTTTTCTTGTTACTTT TTCTCACCTTTTTCCCTGTTTTTGTTTCTTGCAAACACAAGTTGTTTAATGGGATTGGGTTAATTTATATATTTAATGAC TAGGATAAACATAAGACTGAGAAAGACAGAATTGAAGTTAGTGGTATATAATTAATATTTAGGGTTAATTGTAATTTTAG ATCGATAGTTGATCTCCTAGTTATATAGCTTATTTAATCATCTACTTTTAGAATTAAACATATTTTGTAAATTTTTTTAT GTATAAAAAGAAAAAATTTAGCCTAACAAAGTAAAAAAAGTTATTAAAAATTGATATATTTTAAAGATATTTATACACAT TGAGATTAAGGTTTAAAGAAGAAAAATCTTTGGTGTTTTTTTTTTATGTCGAATGAAACTTAATATTTTGATTTGTGAAT TTTGTGTGGAGGCTAGGGTTTAAATAATTTGATTTATTAAATTTAGAAAAAAAAAATCACTTAAAATGAAAAGTAAATAG TTTGTTTTAAGTATAATAATGAAAATAACCTAGAGACTGAATTGTAACAATTTGAAAAAATAAGGAAAGTTTAATCAGGT TGTGATATTATGTGTAATATGCTGTCACATTGATAAAATGTGTCATGTCATCACCTCATTACATAGTGGATTTGGGGTCC AATCATAAATTGCTTTGCTATGTATACATCGACTGATTGCTTGTCGTGTTCCCTAGCTGGTCATCATCACATTTTTCAAT TTTCACGGGCATAATTGGTCGGCAATATTTAAGCTCGCAAACTTAATGCAATTGGTCCATCCTAGTTGTTAGTATCATTT ACCAGCTTTTAATTTGCTATCTTCATGACTATAACCATAGTTGTCATGTCCTAGTCACGGCAGCTTTTCATTTCACAGTT CAATGCACCAACGCAATCAATTAAGTCCATAAGAACAACATAGTGGACATATGTAGCTATTAGATATTTAGAGAACTTTC AATTTGGGAAACAATGGCATGAGTCACGACTCACGGAACGTGCCAAACAAGTTTCAATCAGTCATCGTTGGTTATATGCT GCTTTGTTATGATGATAGCAAATTAATAAATTGTTCATTTTGTTTTTCAAGAAAAGCCTAATTGTCAAAGAGGATTTACC AAATACCAAGGTCTAGTACATTTGGTTTTTTAAGCCTCCAATCAAGAGTTTGATACCAGATGGAGAAAGATTTATTGGAA AAAAACATATCTATCAAATATGAAAATACTTGCTACAACGAAAAATTGTCAAAAATTTATACCGGAGCAACAAAAATAAC AATAATCTTAGAGAATAATATAACAGTATAAAAGAGAAAAAGAAAAAAAAATATCAGATATCAGAAATCAGATCCTGAGT ACTAGTTATTTTTTCGATGTATAAAAAAAAATCGTAAGTACTAGTGGCTTTAGCTGGGCCATATTTTAAATATAACATCG TTTTTCAGCTGAGATGGGGTAGCACCTTCAAGTCCCATGTAGCTGTCACTGTCCTTGTTTAATTTCTTCTGATATTATGA TGATTGTCTTGTCTTATATATCTACTTGCTGTAAATATATTATGAAATTTCTCTGTGAACCTAACCTTGTTAATTTGGGA TGAATGCTACAGGCAATTTCAATACAGAATGCAGACAGAGAAAATGAAAAATGATGAAAGGTGGAGACTACTAGCGAGGA AAGTGGCCTCAGCCAAAATCATGTTTTCCTTGTCTCTTTCAAAAAGGAAGCGGAATGAGGAAACCAGAGTGTCGATGAAC AATCCAGGGATCAGAAGCTTCAAATTACAATGAGTCTTGTGATTATCTAAAGGACGATTTGTTTCTTATTGCTAGGGCCC TTTCCTTGAGGATAATATTCTGTTGTTTTTTGGGGAAGTCGGAGGATTTTGGATAGTGTGAAATTGAGCATTAGCTTGTA ATTGTAGATGCTGTTTATTTGTTATAGATATGAGCAAATTGGACCTCAATTTGCATTGTCATCTATTGTAGATATAAGCA AATTGAACCTCATTTTGCATTGTCATAAGTTTTGAACAACATTAGTTAAGCTAGTAATAAATTTGATTATTACTATTTGT GTAAAATTCAAACAATGATCTTAAATTCAAACTATTTGGCACATAATAATCACTCGCATCAACTAGGATAAAAATAACGC AGCGGATCTTCTAGCAAAGAAGGCTTGCCGTGAGGGGTCGTCGAACCAAATTTGGGGACAACCACCTTCGTTTATTTATG AAGCTTTGTACTTAAACGCATCTTTGTAGTTTCTTTGTCTGTCCTTTTCCTCCTCTTGTAACCAAAAAAAATAGTTATTA GTTTACAAGCATTAAGTGATTATTTAAGTTTATGTATCAAAGATGTGATAATATATTAATATGAGTGGAAGGAATTCATG TAACTCAA
CDS sequence (LotjaGi4g1v0225900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCCCAAAGCGAACAAACCACCCGGGTCGAACCCGAACCCGATATCTTCATCCACACCTCCGATGGAACCCGCAT TCCAGCACACTCAAACATTCTGGCTTCTATGTCACCGGTTTTGGAAAGTATGATAGACCGGCCGCGAAAACACCGGAGCT CCGAACGAATAATCCAAATCCACGGCGTCCCCGGCGACGCCGTAACCGCATTCCTCACCTTCCTCTACTCCCGGCGCTGC ACGGAGGACGAGATGGATCGCTACGGCATGCACCTGCTTGCTCTCTCGCACGTCTACATGGTGCCGCACCTCAAACAGAG ATGCACGAAAGGCCTATCGCAGCGCGTGAACACAGAAAACGTGGTGGACATGCTCCAACTGGCGCGTCTCTGCGACGCGC CGGATCTCCACCTCCGCTGCATGAACCACCTCACAAGAAACTTCAAAACGGTGGAGGAAACCGAAGGGTGGAGGTTTTTG ACGAAACACGATCCGTGGTTGGAACTCGAGGTGCTGCGGTTCATGGACGAGAGCGAGACGAGGAGGGAGAAGTCGCGGCG GAGCAGGGAGGTGCAGGGGCTGTACGCGCAGCTGAGCGAGGCGATGGAGTGTTTGGATCACATTTGCACGGAAGGGTGCA CCCTTGTGGGGCCACACCATGTGGAGGTTGATAGAAAGAGTGGGCCATGTAACAAGTTCGCCACGTGTCAGGGTGTGCAG CAGTTGATTCGGCACTATGCCACGTGTACGAAGAGGATGGGTGGTGGGTGCTTGCGGTGCAAGCGAATGTGGCAGCTTTT CCGCCTCCATTCCTATGGTTGTGAACACGCTGATTCCTGCAACGTTCCTCTTTGCAGGCAATTTCAATACAGAATGCAGA CAGAGAAAATGAAAAATGATGAAAGGTGGAGACTACTAGCGAGGAAAGTGGCCTCAGCCAAAATCATGTTTTCCTTGTCT CTTTCAAAAAGGAAGCGGAATGAGGAAACCAGAGTGTCGATGAACAATCCAGGGATCAGAAGCTTCAAATTACAATGA
Protein sequence (LotjaGi4g1v0225900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPQSEQTTRVEPEPDIFIHTSDGTRIPAHSNILASMSPVLESMIDRPRKHRSSERIIQIHGVPGDAVTAFLTFLYSRRC TEDEMDRYGMHLLALSHVYMVPHLKQRCTKGLSQRVNTENVVDMLQLARLCDAPDLHLRCMNHLTRNFKTVEETEGWRFL TKHDPWLELEVLRFMDESETRREKSRRSREVQGLYAQLSEAMECLDHICTEGCTLVGPHHVEVDRKSGPCNKFATCQGVQ QLIRHYATCTKRMGGGCLRCKRMWQLFRLHSYGCEHADSCNVPLCRQFQYRMQTEKMKNDERWRLLARKVASAKIMFSLS LSKRKRNEETRVSMNNPGIRSFKLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 340 | 334 | 1.6E-191 | – | |
| PANTHER | 7 | 340 | 334 | 1.6E-191 | – | |
| Gene3D | 12 | 115 | 104 | 1.2E-15 | – | |
| CDD | 14 | 116 | 103 | 6.26348E-45 | – | |
| ProSiteProfiles | 15 | 84 | 70 | 11.316 | ||
| Pfam | 15 | 114 | 100 | 1.5E-13 | ||
| SMART | 15 | 116 | 102 | 1.0E-9 | ||
| SUPERFAMILY | 16 | 114 | 99 | 5.57E-13 | ||
| Gene3D | 116 | 186 | 71 | 1.4E-13 | – | |
| CDD | 117 | 164 | 48 | 1.28434E-7 | – | |
| Gene3D | 187 | 318 | 132 | 2.6E-16 | ||
| SUPERFAMILY | 191 | 289 | 99 | 3.4E-18 | ||
| SMART | 192 | 286 | 95 | 1.2E-17 | ||
| Pfam | 199 | 285 | 87 | 4.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Molecular function | Histone acetyltransferase activity | Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi4g1v0225900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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