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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0226400 |
| Transcript ID | LotjaGi4g1v0226400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT1G24530.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A151TE50|A0A151TE50_CAJCA Vegetative incompatibility protein HET-E-1; Found in the gene: LotjaGi4g1v0226400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53589762..53592196) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTCTTCAAATATTCCACTCTACCAATTGGAAATGGAAGGTAATGTTTCTAGATCTACAAACATACATATCGTGAAA AGCGAACCATCAAATCAGTCAATCAACATTTACATGAGGAACAAGTTGAATTATAATTAGACTTCAAGTTAGTTATTAAA TTAAACAAAATGTCAAACAGTAAATTGAATGTTTATTTGTTTAATCTGAGGAGGATCATAGTGAATGTTGGGAATAATTT GAGGTTCTCTCTCTTGATTAATTAACTAAACACGTACGGCAGGACATGATCACCATTTTATGTGTGGAAGAATTTCCCAA CTAATTAAGAGCGTCACGTTGGCCAATCTGATTCGGAGGCCCCACAAATCACACATGGACCCCACCACTACTTTTTGCCC CACCAAGTTACTTCTCTGACCCTTCTCCCCTCGCCACGTGTTTTACTTTCAACACTCTCCACGTGCCACTCCAATAACAA ATCTCAACCACTACTTATTCTCCCGCTTCATCAACTCCTCTTGAGAGCTCACTCCATCATCACAAAGAAACTAAAGAAAC AACAATAATGAATAACTCCACCCCTCTCCATGATAACGCGAACTCTATTCAATGTGTGACTTCTCTCAAAACACTAACAC CGCACATAACATGTCTTGCGGTTCACCGGAACTTTCTCTATGCCGCGTCCCTAAACCTAATCAACGTCTTCGACCTCTCC CATTACACCCTCATCGACACCTTCAACCAAAGCCCTCGTTCAGGTTTCGTCAAATCCATCACGTTCAATGGTTCAAAAAT CTTCACTGCTCACCAAGACTGTAAGATCCGTGTCTGGATCATCACCCCATCAAAACGACACCGTCTCTTAACTTCCCTTC CCACCGTCAAGGACCGTCTCCGACGCTGCATCGTGCCGAAAAACTACGTCACCTCTCGCCGCCACCGTAAGAGCCTTTGG ATCCAGCACAACGACACCGTTTCGGGTTTGGCGGTGAACGGGAGGCTCATGTATTCAGTTTCGTGGGATAGGAGTTTCAA GATTTGGGATTTAACGAGGAATTACCGTTGTTTGGAGTCTGTTAAGGCGCATGAGGACGCTATTAACGCCGTGACAGTTG GACGTGACGGCGCAGTTTACACGGCGTCGGCCGACGGGTGCTTGAAGATTTGGAAGAGGGATGAGAAGTTGAAACGGCAC GTGCTGGCGAGCAGTGTTGTAGGGAAGCAGAGGCCAACTGTTAACGCGCTTGTGCTGGATGACGGTGGCGAGGAGTTGTT TTCTGGCGGTAGCGACGGGAGGATCTGCCGGTGGGAGAGTGAGTGCGGCGGAGGGGAGGGTGTTGTGTTGGTGGAGACGT TGAGGGGTCATGGTGGGGCTGTGCTGTGTTTGGTCCACGTGGGTGGGTTGTTGGCGAGCGGGGCAGCGGATGGGACGGTG AGGATCTGGCGGCGGGAAAAGGGGAGTGGCGGGTATTTTTGCGGGGCGGTGTTGGGAGGGCATGAGAAACCGGTGAAGTC GTTGGTGGCGGTTTCCGGTGGTGGAGGTGACTCGAATGGTGTCGTGACGGTTTTCAGTGGAAGCCTAGATGGGGAGATTA AGGTGTGGGAGGTGTTTGCTGGTTCAGTTTGAAGTTTGAACATGTGTAGCTAGTCTGCAAATGATTTCCAGAAGGGAAGA ACAATTATTCCACATTTCGAACCAATTAGAAACAGACAACATCAATAAACAAATAAAAAAGTACACTGGAAAATTCGAAA ATGGAAAGCACGTGACTCTTCCTCCACTCTCCTTCCTTGACAACACTTAACTTTTTCTGCAACATCTCTCCATGACTCTT GCTAACAACCCATGTGGACTGCATGCGAGAAACACATGCTTCCGGCTCAACACTTATAATTTATATATCAATCTCAAATT AACGCGCGTTTTCATCAGGCTGTGTCGTTGCTATAGTGAAGCTTCACATTATATGATAGTGGCGGCAACAACCTGTTATA ATGTTATGACTTATGAGGATATATGGAGTAGCAGGCTGCAGATGAAGAGTAGAGAAAGCAACAAAAGACGAAAGAAACAT ACTTACAAGTTGGTTAGGCCTAACTAGGGCTGGGTGTGGAATTTGACAGATTTGACATTTACGGGTGCCTTATACATACA TGTGGTCTTCAATAATAAATTGATAGACTAACATGCTTTGGGCTTGTAGTTTCAGTTCAGCTGACCCAATATATCATTCT AGATGCAGTGTTTTATTTTAGTCTCAGTAATTTTGTATTGGGTTGTTTTAGTTTCTACTAGAGTGTTCCTCAGTTAATCA TAGGATGAAGCCTCGTGTGTGGTTCTCCTTGATTGCAGGGATGAGTCTCTTATCAATTGTAAGGTTCCCATTATGAAAAT TGTAACCAGAAAATTGGGTTTTCCATCAGTTTGGT
CDS sequence (LotjaGi4g1v0226400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAACTCCACCCCTCTCCATGATAACGCGAACTCTATTCAATGTGTGACTTCTCTCAAAACACTAACACCGCACAT AACATGTCTTGCGGTTCACCGGAACTTTCTCTATGCCGCGTCCCTAAACCTAATCAACGTCTTCGACCTCTCCCATTACA CCCTCATCGACACCTTCAACCAAAGCCCTCGTTCAGGTTTCGTCAAATCCATCACGTTCAATGGTTCAAAAATCTTCACT GCTCACCAAGACTGTAAGATCCGTGTCTGGATCATCACCCCATCAAAACGACACCGTCTCTTAACTTCCCTTCCCACCGT CAAGGACCGTCTCCGACGCTGCATCGTGCCGAAAAACTACGTCACCTCTCGCCGCCACCGTAAGAGCCTTTGGATCCAGC ACAACGACACCGTTTCGGGTTTGGCGGTGAACGGGAGGCTCATGTATTCAGTTTCGTGGGATAGGAGTTTCAAGATTTGG GATTTAACGAGGAATTACCGTTGTTTGGAGTCTGTTAAGGCGCATGAGGACGCTATTAACGCCGTGACAGTTGGACGTGA CGGCGCAGTTTACACGGCGTCGGCCGACGGGTGCTTGAAGATTTGGAAGAGGGATGAGAAGTTGAAACGGCACGTGCTGG CGAGCAGTGTTGTAGGGAAGCAGAGGCCAACTGTTAACGCGCTTGTGCTGGATGACGGTGGCGAGGAGTTGTTTTCTGGC GGTAGCGACGGGAGGATCTGCCGGTGGGAGAGTGAGTGCGGCGGAGGGGAGGGTGTTGTGTTGGTGGAGACGTTGAGGGG TCATGGTGGGGCTGTGCTGTGTTTGGTCCACGTGGGTGGGTTGTTGGCGAGCGGGGCAGCGGATGGGACGGTGAGGATCT GGCGGCGGGAAAAGGGGAGTGGCGGGTATTTTTGCGGGGCGGTGTTGGGAGGGCATGAGAAACCGGTGAAGTCGTTGGTG GCGGTTTCCGGTGGTGGAGGTGACTCGAATGGTGTCGTGACGGTTTTCAGTGGAAGCCTAGATGGGGAGATTAAGGTGTG GGAGGTGTTTGCTGGTTCAGTTTGA
Protein sequence (LotjaGi4g1v0226400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNSTPLHDNANSIQCVTSLKTLTPHITCLAVHRNFLYAASLNLINVFDLSHYTLIDTFNQSPRSGFVKSITFNGSKIFT AHQDCKIRVWIITPSKRHRLLTSLPTVKDRLRRCIVPKNYVTSRRHRKSLWIQHNDTVSGLAVNGRLMYSVSWDRSFKIW DLTRNYRCLESVKAHEDAINAVTVGRDGAVYTASADGCLKIWKRDEKLKRHVLASSVVGKQRPTVNALVLDDGGEELFSG GSDGRICRWESECGGGEGVVLVETLRGHGGAVLCLVHVGGLLASGAADGTVRIWRREKGSGGYFCGAVLGGHEKPVKSLV AVSGGGGDSNGVVTVFSGSLDGEIKVWEVFAGSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 113 | 105 | 2.7E-9 | ||
| PANTHER | 11 | 351 | 341 | 7.1E-163 | – | |
| PANTHER | 11 | 351 | 341 | 7.1E-163 | – | |
| SUPERFAMILY | 13 | 349 | 337 | 2.93E-42 | ||
| SMART | 13 | 49 | 37 | 25.0 | ||
| SMART | 52 | 91 | 40 | 12.0 | ||
| Gene3D | 114 | 353 | 240 | 5.3E-40 | ||
| SMART | 125 | 161 | 37 | 0.53 | ||
| ProSiteProfiles | 131 | 354 | 224 | 24.205 | ||
| PRINTS | 148 | 162 | 15 | 6.3E-6 | ||
| SMART | 165 | 203 | 39 | 2.9E-5 | ||
| Pfam | 167 | 203 | 37 | 0.0046 | ||
| ProSiteProfiles | 172 | 203 | 32 | 9.239 | ||
| SMART | 210 | 250 | 41 | 5.6 | ||
| SMART | 258 | 295 | 38 | 9.7E-5 | ||
| Pfam | 262 | 294 | 33 | 1.1E-4 | ||
| ProSiteProfiles | 265 | 294 | 30 | 9.706 | ||
| PRINTS | 282 | 296 | 15 | 6.3E-6 | ||
| SMART | 302 | 348 | 47 | 0.067 | ||
| Pfam | 305 | 347 | 43 | 0.057 | ||
| ProSitePatterns | 335 | 349 | 15 | - | ||
| PRINTS | 335 | 349 | 15 | 6.3E-6 | ||
| ProSiteProfiles | 335 | 354 | 20 | 8.804 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0226400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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