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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0229400 |
| Transcript ID | LotjaGi4g1v0229400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase p62; TAIR: AT5G63120.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30; TrEMBL-Plants: tr|A0A072URV4|A0A072URV4_MEDTR DEAD-box ATP-dependent RNA helicase-like protein; Found in the gene: LotjaGi4g1v0229400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53918258..53924010) extracted from Lotus japonicus Gifu genome v1.2.
GGCGCGTGGTTGTGGAATGGGCTTAGAACGGTGGCGGCAGTGAGATAGATCCAGAACCAGAGACGCTATAGCCTACCGTA ATAACCCGACTCTCCCTCTGAACTTTTTCATACTCCTTTTCAATTTCTGAATCCCTAAAATTTCACCACCCTCCCCAAAT CGCGTTTTTTCTGAAACCCTAGCTTCTCACAACATGAACCCCTTCGACAATCGATACTCCGATTCCTCTTCATATCGCGA TCGTCGCAGGTACCTTCGTTTTTTCTGATTACTATCGTTATTATATTTTTCCTTTCTGCTTGCGATTTGTTCAATCAAAA TAATCACGTTTTTTCAATGATTTTGTTGATTGTAGTGATGTAATTGGACCTATGCGGCCACCCGTTGCCAGCCGCGTCGG TCCGGTTCCCTACGGTGCTCCATATGCGGCCCCTGTACCCAGCGGTTTCGGACCCGCCGCACACGCTAACCCGAATCCGC CGTTTGTTCCTCCTTCTGGGGGATTCTCTGTTGGCCGAGGCGGTGGATTTGGTGGTAGAGGGGGTGATAGGAAATATGAC ACGGGTCGTTATAGCGGTGGTGGTGGTGGAAGAGGTCGTGGCGGTGGTAGTTTTAGGGGTGGAGGCAGAGGTGGGAGAGG CGGTGGGTTTGGAGGTAGACATGGTGGTGGGTCTTCTAAGGATGACTTGAACAATATTTCGCTACCGAAACAAGATTTTA GGAATCTGGTCCCTTTTGAGAAGAATTTTTACATTGAGAGCCCTGCGGTAAGGGCTATGTCTGAACAAGAAGTTATGCAA TACCGTGCAAGCAGGGATATTACTGTCCAAGGGCAGGATGTGCCGAGACCTATTCGGTCGTTTCATGAAGCTAGTTTCCC TGGTATTTTGCTTGTTTGTGCTCGTGTTTTGTGCTAATAATTGATGACTTCCTTTGTCTGATAATCTATATTCTGTTGGA ATGTTAGGTTACTGCCTTGAGGTCTTTGCCAGATTGGGTTTTGTTGAGCCCACTCCAATCCAGGCTCAGGGTTGGCCCAT GGCTCTGACGGGTAGGGATTTGATTGGCATTGCTGAGACTGGCTCGGGTAAAACCTTGGCGTATCTGCTTCCTGCATTAG TGCATGTGAATGCTCAACCTCGATTGGGTATGTATTTGATTACCTGTTTAATATGTGAAACTCAAAGTTACTGTTTTATC TATTCCGGTCTGACTATTTCTATGGTGTAATGGATGTTTTTGCTGCTTCTTCAGTTCAAGGGGATGGTCCCATTGTCTTA GTTTTGGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGAGCAAATATTAGAAT TACTTGCATCTATGGCGGTGCACCAAAGGGCCCTCAAATTCGTGACCTTCAAAGAGGTACTTAATTATAAAATAGGCTAT ACGTTAATGAAGGACCTATTTTATATTGATCAAAATTATGAATAACATGAACATAGTCATTAACATTTGCATCATCGCAG GCGTTGAGATTGTAATTGCTACCCCTGGTCGTCTAATCGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACT TACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTTAGCCAGGTACT GTTTGTGAGTTGTGACTAACCTATAGGTAGCAAGTGGTGCAAAAAACTTGGTATCTTTTTCGTTTGTGTCGTGGACCATG GTTCTTTTGTATACTCGGTTGTAGCAACGAGAAGGTAGGAAGTGATAAAATTTTCTGGGAAGAGGGAAAACAATGAAAAC TACAGCAAAGTAAAAGCAACATCACTTCAGAATCATAGATAAGAATCTGTAGCATTCCCCTGTTGTGCAGTATTTTCCTG GCATTCCATTTGCACCTTTTTTTTTATTATTTCAATCCACAATCAGACCACCATCCTTTAGGGAATTTCTACAAAGCAAA ATGGCCACCTGTTTGCAAATAAGACTCAAAATGGGCTTGTTGGCACAACCCAAATGGAGTATCAGATAAGTACTGCTATT CAAAAAATGAGCATAATCTAACACATAGACACTCGTTACTGTGAACATCGGTGGAAGTTAAGGCCCTAAGGATCCATTAT CTCAGAGAGTTCTCTTAACTTCACTGTCGTGTGCAACTAAGAGACTGACACTTTGTCCTGTGTTTAACTAACTGTGTCAG TGTCTATGTGTGTGTGTGTGTTTGTGTGTGTCTAGTTAGAGAACTAATTCTATCTAGAGTGAGAGGAGTAAATCTATACT ATTCAATCATATATGATACATGGATGATCTAGATTAAAAATTGCTTATGGTCACATAACCACCTTAAAAAGTCACATGAC TTTACGTTTTATTATTGTTAACTATTTATTGTTAGATCTAATGGTCAATATATATACTCCTCAATCTCATAAAAATAACC CTTTCACTTCATACTCTATGTATGCAAGTCATTGTTATGTAATTTTCATGACAAGGTTATGTTTAAAATTTATATATAGT TATTTTAGCTAAGGTGATCATTGTAATAACATTCTTGTTGTTTTCTGATGTACCAAAAAAAAAGTAATAACGTTCTTGTT AAATAACATACACCAGCCTCTATTCTAGGACATAGGTCACTTCACATTTAGAGACCGAAATCATGACTCCAATATAGTAG GAGGTGCATCCTTCTACTGAATATATGAATATGGTTATCCCCCACTCCCAAGAAAATATGTATATCCTTATGCATGTCAC ACATTTAAATTAGTGGAACACTAGAACTCGTTTGTATTTTGTAATTTGTACTTATTAACATGTTCTTTGTACTCTAATTT ATTCTTACAATATACTTGTTACTACTGTTTTAACATAAGCTTTAGAGGGATGTTTAGTTACATTGGTGATTTGTAATATC AGATTCGACCAGATAGGCAGACACTATACTGGAGCGCTACATGGCCAAGGGAGGTTGAAACTCTTGCAAGACAGTTTCTG CGCAACGCATATAAGGTTACTTAGCGCTTCCAATATACTATAATTTTGCATATCTATAAATGTCCATTGTAGATCCTTGC AGGAAAAGTTGTGCTATGAATTGGCTTAATTTAACCTCATTTAGGTTATTATTAATGTGTGTTTTTCCGTGGGATATCAT GATCTTTCAGGTAATTATTGGTTCACCAGATCTGAAAGCAAATCATTGTATAAATCAAGTTGTTGAAGTTGTAACCGACA TTGAGAAATACAATAGGTTTGTACCCCCACTGGTAGTAGACAGGAACCAATACTTTTGCTTGCCAAATTAACACTTCTGC TTTGCAAATGCAGATTGATCAAACTGCTGAAAGAAGTGATGGATGGTGGCCGAATTCTAATATTTATGGAGACCAAAAAG GGATGTGACCAAGTTACAAGACAATTGAGAATGGAAGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGA AAGGGACTGGGTTTTGGCTGAATTTAAAAGTGGCAGAAGTCCAATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTG GTAGGATCACTGTGTTTTAGAATCATAGGGTTTTTCGTATAGGTGTAAAATTTAAACAATATGTGAGTTGGCCGGCTGCT GTCCAGTTCCCCTTGACATAATTTGTGGTTTGGGTGTATACGGGTGCCATATTGTCAGTTTGATGGAACTGCCTGTAACT TGACCAGGGGATTATTGAGTTGCATTCGGAGATGAAATTCTTCTGCTGCAGTCAGTAGATTACCTGCTGCTGTTAATTTG AGACCATCTTCTAAGAAATGTCAAGTTACATGGATACCCGTGGCAGAGTTCCTTTTGAGATATGCTTGGATGCTGGTATA TAATTTGAGATAGTGTACCATGTGTGGTTCTGTAAATTTCATAGGATGGGCTAATGCATGGTGATTTTGCTTGATTGACT AAATGAAGTTACTTCATCATTAATGTGCTAAGTGATACTAGTCATACAACTGTCGTCAAATTGATTGATCCCCATCCACA GTTATGGAGCTGGTTCTCTTTGCAGCCCGGTTGACTCATACGAGCTTAGTTGATAATTGGATGTGGTAGATGCCAGTGAT GGTGAAGCTGCTCCTTATCCCTGAAAGGTTAAGGTGGGCACATTTTTGTGATGAATGTGTTTACTTGAGTTTGATCTCTA GAGTCTTACAGGGCAGGGATAAGGAGGATGTTTGCAGTTTTCTCCAATTTGCAAACCTTGCACAGAATTACTTACTTTGT TTGGCTTTGTTTCTTGTAGATGTGAAAGACATAAAATTTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGT CCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACCGCACTCACCTTTTTCACCCATGCCAATGCCAAGTATG CTAGGGAGCTAATCAAGATTTTACAAGATGCTGGTCAAGTTGTGAGTCCTGCACTGTCTGTTATGGCTCGATCTGCTGGT TCTGGTCCACTTGGTAATTCAATTTCTTTTTGATACTGAACTCTTGAGTTTCTCTCTTGGGGTTTTCTGTAACTAGTTCT TATTTTTAGGATCCGGAGGAAGCTTTCGCTCAAGAGGACGAGGAGGCTATGGCAATAGGGGTTCAATATCAGGATCCAAT GCCATTCCTGTTGGTATGAAAAGGCCTTGGCCGTATTAGTAACTGGTGCTGTATTAGCCAATTTGTACTACTATTTACTA AAGTCATGATTTTTTTCTTCGGGGGTATGGGGGTTTACTCTATGCCTTTGCTCGCCTTACATTTGAAACAACACGTTAAA TTTTAGGTTTTAGGAAGATAAAGTAAAACATTATCTTACAGCGATTGAAGTTAACGTGGCATGTGTTTTGAATGTAAATG ACTGGTACATGTATCATGTATGGACTTAGTTTGAATGACCTACAGGATCTACTAATGTACTATTTGTTAGCTGCTGCAAT GCTATTCTTTCAAGTTTTGATTCTATTTTATGGGCAGGAATGAGTTAGTGCATGTTTGGAAACATTTCTACAAGAATTTT AAATTTGTTATTAAACTTGCATTTATTAGCTCAGCTAGGTTAACTGAAGCAGGTGAGGACCATGGGATTTGAGCCATGAA AATATTCGGTTAAGGTCAATATACAATGCCTTGTAGTATTGAAATCATTTGTCCTCATTTGGTGTCCCCTCCCTCTCCCA CCAATTAAATTGTGCCATGTGATGACAGTTATGAACTTATTGGAGCTGAACCCATGAACAATCCACTGTTCATAATTAGT GTGTGTTGATCCATACTGTGATTATTGAGAAAGTCTCGGGCTCAATGCAAGCGCTTGATACAAAAAGTGCTCTAGTTTGA TTAGGTAGTGAAATTATCCGATCTACCATCTTTTTGGACTCTGAAAGACATTTACACAAACACACCAAAATAGACGGAGG TGATCATGATGAAACGCATAACCAATAACATTCACGAGCAAATTAAGAGAATAGATTGTGCTGTTCATGTCTACAACTTC AGAAAAAAAGATCGGATGTTTACATTGTCAACTTCAAAATTTGGAAAAATAATGAAACATAGAATGTGTCATTCAAGTTG GCAACTTCAAAAGCTCAAGGATGAATGTTTGTAATTGTTCATCTCATGATTGTTATCTGCTGCTCCGACTTAG
CDS sequence (LotjaGi4g1v0229400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCCTTCGACAATCGATACTCCGATTCCTCTTCATATCGCGATCGTCGCAGTGATGTAATTGGACCTATGCGGCC ACCCGTTGCCAGCCGCGTCGGTCCGGTTCCCTACGGTGCTCCATATGCGGCCCCTGTACCCAGCGGTTTCGGACCCGCCG CACACGCTAACCCGAATCCGCCGTTTGTTCCTCCTTCTGGGGGATTCTCTGTTGGCCGAGGCGGTGGATTTGGTGGTAGA GGGGGTGATAGGAAATATGACACGGGTCGTTATAGCGGTGGTGGTGGTGGAAGAGGTCGTGGCGGTGGTAGTTTTAGGGG TGGAGGCAGAGGTGGGAGAGGCGGTGGGTTTGGAGGTAGACATGGTGGTGGGTCTTCTAAGGATGACTTGAACAATATTT CGCTACCGAAACAAGATTTTAGGAATCTGGTCCCTTTTGAGAAGAATTTTTACATTGAGAGCCCTGCGGTAAGGGCTATG TCTGAACAAGAAGTTATGCAATACCGTGCAAGCAGGGATATTACTGTCCAAGGGCAGGATGTGCCGAGACCTATTCGGTC GTTTCATGAAGCTAGTTTCCCTGGTTACTGCCTTGAGGTCTTTGCCAGATTGGGTTTTGTTGAGCCCACTCCAATCCAGG CTCAGGGTTGGCCCATGGCTCTGACGGGTAGGGATTTGATTGGCATTGCTGAGACTGGCTCGGGTAAAACCTTGGCGTAT CTGCTTCCTGCATTAGTGCATGTGAATGCTCAACCTCGATTGGTTCAAGGGGATGGTCCCATTGTCTTAGTTTTGGCACC AACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGAGCAAATATTAGAATTACTTGCATCT ATGGCGGTGCACCAAAGGGCCCTCAAATTCGTGACCTTCAAAGAGGCGTTGAGATTGTAATTGCTACCCCTGGTCGTCTA ATCGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGA CATGGGTTTTGAACCTCAGATACGGAAAATTGTTAGCCAGATTCGACCAGATAGGCAGACACTATACTGGAGCGCTACAT GGCCAAGGGAGGTTGAAACTCTTGCAAGACAGTTTCTGCGCAACGCATATAAGGTAATTATTGGTTCACCAGATCTGAAA GCAAATCATTGTATAAATCAAGTTGTTGAAGTTGTAACCGACATTGAGAAATACAATAGATTGATCAAACTGCTGAAAGA AGTGATGGATGGTGGCCGAATTCTAATATTTATGGAGACCAAAAAGGGATGTGACCAAGTTACAAGACAATTGAGAATGG AAGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGACTGGGTTTTGGCTGAATTTAAAAGTGGC AGAAGTCCAATTATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATTTGTGATCAATTATGA TTTTCCATCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACCGCACTCACCT TTTTCACCCATGCCAATGCCAAGTATGCTAGGGAGCTAATCAAGATTTTACAAGATGCTGGTCAAGTTGTGAGTCCTGCA CTGTCTGTTATGGCTCGATCTGCTGGTTCTGGTCCACTTGGATCCGGAGGAAGCTTTCGCTCAAGAGGACGAGGAGGCTA TGGCAATAGGGGTTCAATATCAGGATCCAATGCCATTCCTGTTGGTATGAAAAGGCCTTGGCCGTATTAG
Protein sequence (LotjaGi4g1v0229400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPFDNRYSDSSSYRDRRSDVIGPMRPPVASRVGPVPYGAPYAAPVPSGFGPAAHANPNPPFVPPSGGFSVGRGGGFGGR GGDRKYDTGRYSGGGGGRGRGGGSFRGGGRGGRGGGFGGRHGGGSSKDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAM SEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAY LLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRL IDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLK ANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSG RSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHRIGRTGRAGAKGTALTFFTHANAKYARELIKILQDAGQVVSPA LSVMARSAGSGPLGSGGSFRSRGRGGYGNRGSISGSNAIPVGMKRPWPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 132 | 132 | - | – | |
| PANTHER | 130 | 590 | 461 | 4.1E-191 | – | |
| PANTHER | 130 | 590 | 461 | 4.1E-191 | – | |
| Gene3D | 149 | 396 | 248 | 4.7E-87 | – | |
| ProSiteProfiles | 186 | 214 | 29 | 9.769 | ||
| CDD | 198 | 392 | 195 | 5.46475E-137 | – | |
| SMART | 205 | 408 | 204 | 2.0E-66 | ||
| Pfam | 210 | 381 | 172 | 2.4E-50 | ||
| ProSiteProfiles | 217 | 392 | 176 | 32.496 | ||
| SUPERFAMILY | 258 | 545 | 288 | 6.98E-78 | ||
| ProSitePatterns | 338 | 346 | 9 | - | ||
| Gene3D | 404 | 566 | 163 | 3.3E-54 | – | |
| CDD | 405 | 535 | 131 | 4.1769E-60 | – | |
| Pfam | 416 | 526 | 111 | 1.5E-30 | ||
| ProSiteProfiles | 420 | 565 | 146 | 23.789 | ||
| SMART | 445 | 526 | 82 | 5.7E-33 | ||
| MobiDBLite | 568 | 592 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0229400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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