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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0235100 |
| Transcript ID | LotjaGi4g1v0235100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT3G47990.2 SUGAR-INSENSITIVE 3; Swiss-Prot: sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr|A0A072UPV9|A0A072UPV9_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54922026..54926587) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAAAACGCAAAAGCAAACGTAGGCACTAGACTCACACACGCAGTGAGTGACACTTGAGGTAAATGTCGTGAATGAAG TAGTAAATGCGCAAGTGTATGCAACACACGCACACAAACACAAACACAAACACAAACAAAACACAGTGAGGTCAATCAAT GTCTTTGGCGGTGCGGTGTGTATTGTAATTTTGTGTTAGTTCATCCTCTCTTACTTTCAAGTTTCAACAACTCTTAACAG TTAACCCCCACAAATTTCGTGTCCTTTTTCTTCCAATTTCTGCTCCACCTTCCTCTACTTCACTCTCTTTTCTACATTTT GCACTTCGATTCCGATCCGATGATGCATGCTTAAGAACCACGATTCTTCAATACGACACCGCTTCTTTTTTCTTCTAGGG TTTCCTTCATGGCTATCAGAGGCGTCGATTTCAAGTGGTTCGTTCCCTTTCTCTGATACACTGATTGTTGTTACATCCCA ATTTTGATTCAATTTAACTCGCTCAATTTCAGGTACGATGGGTTTTTCTTGTCCATGCTCGCAACCAGTGTGTATCCTTT TACAATTCACCTTCTGGGTTTTCGTAATCATTCTGCATTTTCAATCTCCATGTTATTCCTTTGTTGTTTCATCCTCTTCT AACTTCATCTGAACCAGTTGTGAATTTTAAGCATGAAATGTGTTTGCATGTGTTCTTTGACTACTGGATTTGCAGAGTTA TTGTTGCAATGAATTGGAAGCGTTACCATTCTTGTACATACCCTTTGCACATATGGATTGTGGTGGGTTTCCTTTAATTG TATTAATTAATTCTAGCTTTTCAGAATCTATGGTGGTTATTTGTTTCTATTTTCTTCATTAAGATGAGATTGTCATGTAA ATGAATGATCCCTTTTGTTTTAGTACTGAAAAAATGACTCCTCTTATTTTTCTTGCACGATCCAGGTGGACTACACTACT GTGTTTGTTTTGAGGCTCTTGATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTGTAAGGCTTTCTATCCTTAGA CTTTTGATGTAATTGTTAACTATATTTAAGTTGTTTTCTTCATTTTATAGTAGGTGTATAGAGTGAATGGCACTATATTA TGGTTAAAAGTGAAAATGACACTATGGAAGAGATTGGCTTAAAAGTTTTTAGAGAATATAAATGGACTATGGTCAATGTA GCTGGTGGTTTAATGAAAAGGTACATCTCTTAAGTGAAATTCTGGAAAATAACAGTTTCCGGATGGGGTTAATTTCACTT AATTATTCATGGCTGTTCAGCATTCAAGTGCAAAATTAGTTATGGTCATTTTCCTTTCATGGTTGACTTCTTTGGTTTCA CTATAGCAACATCGACTACGCTGGTTCTGAATTTTTTGTATTGCGTTGAAAAAATGAGTCAAATGATGTTTTAATTTGTC GAATCCCTTTGTTAATTCAGTTGGACTTAATCCCTCCCTCTCCTTTTTCTATGCTTTTAGAGATTTTGGGTGGCAGCAGA GGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACT ATTATTGGTACCCTGTGGTTTAGCAGTTCCAAGAACTGTGTATGTTATTTTTATTTTTATTTAATCTTCACTCTTAAGTG CTACTCTAATTAACAAGCTTATGATGCATGACACAAATTTTTACCCGCAGTTGCCTGAACAGGGTCAGAAATGGGCCTTC CTCATCTGGTTGCTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGGTTACGTTGCTCTATTA ATCGTTACTCATTAGATGTTTCTTTGACATTTTTCCATGTGTAAAATCTGTTTTCATTCCACTTGTCATTATGTTCTTGT TTCTGGACAGCCTACAACAGGGAAATAGGGAAATAGTTTTCATTCCATGTGCAAAACTATTCTCATTCATTATTTCTCAT ATAGGTGGGTTTTGCTCTCATTTTAGTTTAACACTTTGCAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAA CAGGGTATCCCTGTATCTGAATACGGGGTAAGCTTTAATTTAACCGTGGTATAGGTGTCAGCACTTGTTGTGTGTTTTGG AAATTCCATCTTTTGACAGCTTGATACTGCTATTTGCATCAAATAGGAGTATTTCTGAACTTTCCATAATGACATGGAAA GATTTTTCCTTAGTTTTTCCTCAAGTTAAGGGTAGATCGTAGGAACCCTATATTAAGTTTTATCTTGAAATTGAAGTTAG TGCGGTAAATTCTATGTTGACATTTGGTATAACTTGTAGTCTAACATTGTATTGAAGCTACTAAGCTTGCTCATATGCTG GTTCAATTCTCTCTAATAAACATATTGTTAAAGTTTGAGTCTATGTTGCTCCATTCTCATTTTAGTTCTGTTTTGATTTT CTGAACCATGTCCAACTTCCATTTTATGAAGTTAAACTACTCTAGCAATTGTGTACCCAGCAAACTGTCCTGTTGGGGAC TGCTAACTGACATGATAGGCTGGTTGTTTTTTTATCTATCCTTGTATAACAATACTATGATGCACTGTTATTGAGACGTA GTCCCTTGTGTGTGGTAGAAAAATTTGCATGTGGTTGTGATTTGTAAGTTGTAACCTCCCAACTCTCACCTCCCACCCCC TTCTTTTTCCTTTTTATCCCTCCCCAAAGTTACCAATATCCACAGGTGTCATGAATCAAACGAAAACTAAATATCCTCCA TCACTTCTGTGGGATTGGCAGAAAGTTTTTAACAACAATTGCACTGAGCTCTTACTGCTGGGCTCTTTCTGGAGTCAATA TGATTAGTAGATCACTGTATTACTGCCTAAGGGATTGATTGAAATACGATCTGTAATCATATTATTGTATACACATTTCA GTTTGATTATAGCCATACTTGAAAACAGATGATAACAATTGCTATTTTCATTTTGGTAGGTTCTGGTTGATATGATCCGC GTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACT TTACTTAACTCCAGCTCAGGTTGTTCTAGCTGATTTTTGTAGACCTTGATTTCATAGATCTAATATGAAGTAGTTGAACA TGTTATTCTTTGTCAATCTGAGTTAACTTTATTGTCACATACATTAGCTAATGAAATTTATTGCTTGAATTCTCTCATGA ATTATTCATATCGTTCTAGTTTGTTCGGACAATATATTGGTCATTATTATTGTCATATTTATCTCTCTTCAAAACTTTTT TTTTGTTTGTTTACAGTTTATTTTTAGTTTCACTACTGATAGTAGGGTTTCTTGTCTGGGTTGGACGCAGAGAGAAGCAG TTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTA GAAGAGTTCCATGAAGGGAATGAGGTATACTTTTTCAGGGTCTAAACCAAGCCATTTTGTATGCTGTACAGTTCATTACT GAAAAATGTGCTCTTTGTCAAACCTAATGAATTCTTGGAATCCTGCACTTGAGATGGTTGAGATGCATTGTTTAGATTAA TTGAAAATTATAGTTTCTAACTTACAGTAATGCAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATT GATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTC CAACCTCCGTGCTGATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTC AAAGTTACCGGTTACGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGAT GCTTTGGATAATGCTGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGA ATGCATGCCTGTGAGTGTTTCCTCTGCACAAAGTTAAACTACATGGTTTCGGAACTTGTTATATTTCTAACCCATTATAG AAAAGTTGAACTTCTGTTATCCATATATGGCCTTGTAAAAGTGGTGCACATTCTAACATGAAATTTTCATATTGGTCCAT GAAGAAATGGATCAGTTTCTTGTCTTGGGCATCTTGGAGTAGTAGGAATTGGGAAATCATAGTATACCTTTTTGCTTAAC TAACATATTAGCTCTGTAGATGTGTAATTGCCTTTCTTATTTTGGTCGTGTATATTAATTCTGAAGCGTGAATTGTAGAG TTTTCATCTCAATGGATTTTTCAAGGAGTTATCTCGCTTTGTTGTCACCATGAGGCAATTAACATTTCAAGATTCTTTCA TCTTCTAATAACTCTGATATTAATTATAATCTAATACTATTTTAGTAATAATAATAATTAGGCTATAAGTAAACATAGGC AC
CDS sequence (LotjaGi4g1v0235100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTTTGCATGTGTTCTTTGACTACTGGATTTGCAGAGTTATTGTTGCAATGAATTGGAAGCGTTACCATTCTTGTAC ATACCCTTTGCACATATGGATTGTGGTGGACTACACTACTGTGTTTGTTTTGAGGCTCTTGATGTTTGTGGATAATGGGC TTGCTGCGGGAATGGGATTAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAGTC CTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTACCCTGTGGTTTAGCAGTTCCAAGAACTGTTT GCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATCT CACTTGGGAAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTT CTGGTTGATATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGC CACATATCAACCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCA GGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTCCGTGGC TTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGATG CTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTGATTCCGAACGTTCGCCTGCGAGTGTTATGA CAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTACGATTACAGGGTCTTCTCCGCCCAGTGCGT GCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGCTGAGAACGGAGCTGTACCTGTCGGGAGTCG AAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGAGTGTTTCCTCTGCACAAAGTTAA
Protein sequence (LotjaGi4g1v0235100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCLHVFFDYWICRVIVAMNWKRYHSCTYPLHIWIVVDYTTVFVLRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSV LALLLYPFLWAWTIIGTLWFSSSKNCLPEQGQKWAFLIWLLFSYCGLFCIACISLGKWWTRRQAHLLRAQQGIPVSEYGV LVDMIRVPDWAFEAAGQETRVMAQDAATYQPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPVCLEEFHEGNEVRG LPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSPASVMTTTRYVRGQPASQSYRLRLQGLLRPVR AEVAGPVGDTDDALDNAENGAVPVGSRNASTREQVSSVECMPVSVSSAQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 13 | 356 | 344 | 1.4E-199 | – | |
| PANTHER | 13 | 356 | 344 | 1.4E-199 | – | |
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 30 | 50 | 21 | - | – | |
| Phobius | 51 | 70 | 20 | - | – | |
| Phobius | 71 | 95 | 25 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 96 | 114 | 19 | - | – | |
| TMHMM | 114 | 136 | 23 | - | – | |
| Phobius | 115 | 139 | 25 | - | – | |
| Phobius | 140 | 370 | 231 | - | – | |
| Gene3D | 194 | 271 | 78 | 1.6E-18 | ||
| SUPERFAMILY | 207 | 274 | 68 | 1.23E-20 | – | |
| Pfam | 224 | 266 | 43 | 2.8E-13 | ||
| SMART | 225 | 265 | 41 | 7.9E-7 | ||
| ProSiteProfiles | 225 | 266 | 42 | 13.035 | ||
| MobiDBLite | 326 | 353 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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