Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0235100 |
| Transcript ID | LotjaGi4g1v0235100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr|A0A072UPV9|A0A072UPV9_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54922471..54925118) extracted from Lotus japonicus Gifu genome v1.2.
ATCCCTCCCTCTCCTTTTTCTATGCTTTTAGAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTA GTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTACCCTGTGGTTTAGCAGTTC CAAGAACTGTGTATGTTATTTTTATTTTTATTTAATCTTCACTCTTAAGTGCTACTCTAATTAACAAGCTTATGATGCAT GACACAAATTTTTACCCGCAGTTGCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCTTTTTAGCTACTGTGG ACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGGTTACGTTGCTCTATTAATCGTTACTCATTAGATGTTTCTTTGACA TTTTTCCATGTGTAAAATCTGTTTTCATTCCACTTGTCATTATGTTCTTGTTTCTGGACAGCCTACAACAGGGAAATAGG GAAATAGTTTTCATTCCATGTGCAAAACTATTCTCATTCATTATTTCTCATATAGGTGGGTTTTGCTCTCATTTTAGTTT AACACTTTGCAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAACAGGGTATCCCTGTATCTGAATACGGGGT AAGCTTTAATTTAACCGTGGTATAGGTGTCAGCACTTGTTGTGTGTTTTGGAAATTCCATCTTTTGACAGCTTGATACTG CTATTTGCATCAAATAGGAGTATTTCTGAACTTTCCATAATGACATGGAAAGATTTTTCCTTAGTTTTTCCTCAAGTTAA GGGTAGATCGTAGGAACCCTATATTAAGTTTTATCTTGAAATTGAAGTTAGTGCGGTAAATTCTATGTTGACATTTGGTA TAACTTGTAGTCTAACATTGTATTGAAGCTACTAAGCTTGCTCATATGCTGGTTCAATTCTCTCTAATAAACATATTGTT AAAGTTTGAGTCTATGTTGCTCCATTCTCATTTTAGTTCTGTTTTGATTTTCTGAACCATGTCCAACTTCCATTTTATGA AGTTAAACTACTCTAGCAATTGTGTACCCAGCAAACTGTCCTGTTGGGGACTGCTAACTGACATGATAGGCTGGTTGTTT TTTTATCTATCCTTGTATAACAATACTATGATGCACTGTTATTGAGACGTAGTCCCTTGTGTGTGGTAGAAAAATTTGCA TGTGGTTGTGATTTGTAAGTTGTAACCTCCCAACTCTCACCTCCCACCCCCTTCTTTTTCCTTTTTATCCCTCCCCAAAG TTACCAATATCCACAGGTGTCATGAATCAAACGAAAACTAAATATCCTCCATCACTTCTGTGGGATTGGCAGAAAGTTTT TAACAACAATTGCACTGAGCTCTTACTGCTGGGCTCTTTCTGGAGTCAATATGATTAGTAGATCACTGTATTACTGCCTA AGGGATTGATTGAAATACGATCTGTAATCATATTATTGTATACACATTTCAGTTTGATTATAGCCATACTTGAAAACAGA TGATAACAATTGCTATTTTCATTTTGGTAGGTTCTGGTTGATATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGG TCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACTTTACTTAACTCCAGCTCAGGTTGTTCTAG CTGATTTTTGTAGACCTTGATTTCATAGATCTAATATGAAGTAGTTGAACATGTTATTCTTTGTCAATCTGAGTTAACTT TATTGTCACATACATTAGCTAATGAAATTTATTGCTTGAATTCTCTCATGAATTATTCATATCGTTCTAGTTTGTTCGGA CAATATATTGGTCATTATTATTGTCATATTTATCTCTCTTCAAAACTTTTTTTTTGTTTGTTTACAGTTTATTTTTAGTT TCACTACTGATAGTAGGGTTTCTTGTCTGGGTTGGACGCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAG TTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTATA CTTTTTCAGGGTCTAAACCAAGCCATTTTGTATGCTGTACAGTTCATTACTGAAAAATGTGCTCTTTGTCAAACCTAATG AATTCTTGGAATCCTGCACTTGAGATGGTTGAGATGCATTGTTTAGATTAATTGAAAATTATAGTTTCTAACTTACAGTA ATGCAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATG TCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTGATTCCGAACGTTCGC CTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTACGATTACAGGGTCTT CTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGCTGAGAACGGAGCTGT ACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGAGTGTTTCCTCTGCAC AAAGTTAA
CDS sequence (LotjaGi4g1v0235100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCA ACCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGG CTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTCCGTGGCTTGCCTTGC GCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTT TCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTGATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCA GATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTACGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTT GCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGCTGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATC AACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGAGTGTTTCCTCTGCACAAAGTTAA
Protein sequence (LotjaGi4g1v0235100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRVPDWAFEAAGQETRVMAQDAATYQPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPVCLEEFHEGNEVRGLPC AHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSPASVMTTTRYVRGQPASQSYRLRLQGLLRPVRAEV AGPVGDTDDALDNAENGAVPVGSRNASTREQVSSVECMPVSVSSAQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 193 | 193 | 7.4E-96 | – | |
| PANTHER | 1 | 193 | 193 | 7.4E-96 | – | |
| Gene3D | 31 | 109 | 79 | 5.4E-19 | ||
| SUPERFAMILY | 43 | 111 | 69 | 4.24E-21 | – | |
| CDD | 61 | 105 | 45 | 6.73986E-19 | – | |
| Pfam | 61 | 103 | 43 | 1.2E-13 | ||
| ProSiteProfiles | 62 | 103 | 42 | 13.035 | ||
| SMART | 62 | 102 | 41 | 7.9E-7 | ||
| MobiDBLite | 163 | 190 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…