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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0236800 |
| Transcript ID | LotjaGi4g1v0236800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E2F transcription factor; TAIR: AT3G48160.2 DP-E2F-like 1; Swiss-Prot: sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE; TrEMBL-Plants: tr|A0A151R8W6|A0A151R8W6_CAJCA Transcription factor E2F7; Found in the gene: LotjaGi4g1v0236800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55161128..55165521) extracted from Lotus japonicus Gifu genome v1.2.
CCATGATCCATGTGTGTGCTTGGAGTTGGAGCTCAAATAAATGAATAATAATGAATTTAAAACCCCTCCAAGAGGAATGG TGAAATGCCGTTAGACGCCCTAATTCCCGCTTAATCCTGAAACTCTCATTTTAAACTAAAAAGAAAAAGAAAAAAAGAAA ATCCCTCCAAGTAAAATAAAAAAACCCTCCATCTAGATCTCAAAAAAAAAAAACAAAACAAAACACTCGGCGCTCCTCGA CAATTTTCAAATTCGTAACCCCGCCAATTCATTCACCGTCTCCCTCCTTCACTCTCTCTTTCTTATATCTCATCTCAACG GTCTCTCTCTCTCATCTTCACTCCCTGTTCGATTCGATTCAACCTCCTCCTCCCTCCGCCGTCGAATCCATGGCCGCCGC AGCACCGCCGTCAGATCCCGCCGCCGCATCTTCCAAGCACCACACCTACAATCGCAAGCAAAAATCCCTCGGCCTCTTAT GCACCAAGTAATTACTCTTCTCTTCCCTCCCTCTCTCGCTTCTTACCCTCATCCCTTTTTCCCCCAATTCATTAATCTAA TTTCAATTTTCTCGTTACCGCAGTTTCTTGAGCTTGTACAATCGAGACAATATCCACTTGATCGGTCTCGACGACGCCGC TTCCAGATTAGGTTACTCTCTCTGCTCTTGTTCCTCTGATTTTTCTCCTTCTTTTGATTAATTGGATCTGAAACTTCACT GTTCGGTTGATTTTCAGGGGTTGAGAGAAGACGGATCTACGATATAGTCAACGTTTTGGAGAGCATTGGAGTTCTCTCAA GAAAAGCCAAGAATCAATACACCTGGAAAGGCTTTCGCGCAATTCCCCTCGCTTTGCAGGAGCTCAAGGTAATTTCAATT TTCAATTTTCAATCCCAGTGGTTCGTTGAAATTGAATTAGTTTTATGAAGTTTGCGATGAATTTTCAGTTTCTGATGGTT TATTGATTTGTAGGATGAGGGTTTAAGGGAGAAATCTAGTGACTTTGATGGTGGTAATGACTCTGGAAAAGTGAGTGATT TGTGTTGAATTCTCTATGTTTTGTTCATTCACTTCGATTTTTTCGTTCTCAGAAGAACAATTACTAGGTAGGGTTGGGGG AATTAATGTGGTTTTATTGATCTGTTTTTAGGTGTCAGATGATGAGGATGACGAGGAAGGATTTGGGAACCCCAGTACTG GAAGTCAGAATGAGAAGTCGATGTCCAATTCCACTCTTCCCAGATCTATGAAAAATGGTAACTTATTTTAAAAAACACAA AACCCATTTGAGATATATGAAACTGTGTTTGTCTTTTGAATTTGATTGTGAATATTAGTCAGTTTGATTGAGTGTTAGAA TGATTGTATAGCCTTCAGAAGCTGCTGCTGTTGGTAGCTTACTAGCTTATAATTTACATGTTCTGTAATGTGATGCAATT TTACTTGTTTTTCAAACATGCATTAGTTGGTTTATTCACTGTTCTTTCTCTTTGTTTACCCATTGAAAATCCAAGTGTAG GAAGAAGCTCAACTCCTTTCAAGTCTGATTATGTGATTTTTAATAATGAGATCTGTCTTTCCTATGTGAAAAATGTGAGA AAAATTAGATGTGTTCGTCAGTGTTCAACAGAAAGAAACGCTAATGCAAACACTCTTCTAGATTAGAGATTTAATTTGAG GAAATGTATTTGTCGACAAAAATTTAAATTATTTAATTCAAAATAATATCATATAAGAATTATAGGGTAAATTCTTCACT CTTTGGAAGAACATAGTGTATCTTCTCAACCTCTTTTCTCGCCTCTTAATATATTGAGTAGTCTGTAGTCTTCATCCAAA TATTTCAATATTCTTTCAAACTTAAATTTTTAAAAATAACAACACTTTAAATATTTCAATTTAATTTCTCAATATTGTTT TTTAAAATGCATTTAAAGTGTTGTTATTTTTAAAAATTTAAATAACAACACTTTATGTTGATTCATCTAAACTCAGACTT AAAATGCATCCCCTAAGTCAAAGGTTTATTTCATCAAGTTGTTCAAGTTTTGAGGAATTTCTATTCTCTTTTTGTAATTT AGTGATATACACATGAATATAACAAATTTTGAATGTATGATACGGTTAGTGAATGATACAATGGAGGGAATTAGCATGGA AGTAACACTAATTCTGATTCAGAACATATTTTATTTATTCGATTTTTCTAATATGTTTTTCAGATAACCGAAGGGAAAAG TCTCTGGCCCTGCTCACTCAGAATTTTGTGAAGCTCTTCCTCTGCTCCAACGTAAGCTTTACCAAGTTTCTTGTACATTC CAAGTTGATGTTTCTTTTAATTAGAATCAAATATAGCACATATGTTAAAGTAGAAGTTAAACATGACCCCTCTACTCTGC AGGTGGAAATGATCTCCCTTGATGATGCGGCGAAATTGCTTCTTGGGGATGCCCATAATACATCAATAATGAGAAGTAAG TAATACAATGATTCATCGCTGATTTGACCAAGGAAGAAGACTGAAACTTTTTAACTTATACTGTTCCCATTTGATCTTTC AGCGAAAGTTAGGCGCCTATATGATATTGCAAATGTGCTATCTTCCATGAGCCTTATTGAGAAGGTGATTGTTTCATCTC TTTTGTTTGTTTGTCTATTTATTCATCTATCTATATTTACCATGAAATTGGAGTGAGAAGAGTTTTGGATATCCTCCTTC TTTCTGCATTTATTTGTTTAATGTTACTGTGTAATTTGGCATATTCTTGCCATAGTCTTATCATGATTCTCCAAATTGAT GCAGACACATACAAAGGACACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAGGACAGGGAATGAATCAATTA GCACTTCAAATCTCAACGAGTCTAGGAAAAGGGCATTTGGAACTGATGTCACAAACATCAGCTTTGCTAGGAATAGAACA GATTTATTCATGAATGGAGACTTCGGCCAGAACTCTAAGAAGCAAAAAATTCTGGAAAATGATGGTGTCCTTAGTCAGGC AGATAAAAGCAATTTACAACAAGACACCAAACAGACTTATCAGTTTGGTCCTTTCGCTCCAGCCTACGTATCCAAAGCTG GAAACTCTGAGAACAGTAATGTGAAGCAAGTGCATGACTGGGAGAGTCTGGCAACTGCACACTGCCCTCGGTATCAAAAC CAAGGTATAACATTTTGGACCAGCTTCTTTTTTCTCATAATTAATTTTAAAACTACTTACATAATTTTCTCCGCGGAGTA GTAGAATTTTTTTGCATTAAGTTCAGTGTTGATTAAAATCGAAGGATACAATTTATCTTTGCAAAAAACAGTCCAGGCAT GATTTTTTTTGGCATTGGTTATTCATCGATTGTTCTAGTTTGCACAAAGTGATGTCCTTCGATGATAATTCAGGAGTTAA GCTGATTGATTACAAGCCTATTTTAACTAGTATAAATTGGTTTAATTACTGATATGTTGCTGAAAATTTAACTGATCTAA TGCTTGATTCACTTTTGATGCAGCTTTAAAAGAACTTTTCTCCCATTACATGGAAGCATGGAGATCGTGGTACTCTGAAG TTGCTGGGAAGAGATCAATACAAACTTTGTAGCTTAACTCCAGCAAAGTGAAATAGTATTCTTTTCTGATGGATGCATTT TCTCCATGCGACAGCTTTAATCACTTCAGCTCTAAGCTACCATTCACGGATTTTTTCACCGTGATGCTTGGCCTATATCA GCTTAGGCACTTGTTGCACATTCTTGTATTACCTATATTTATGATAGAGTTTAGTTTCAACCCTTTATTCAAAGTGAAAT TTAGTGGTTAATTCCAGTAATAAAATTCAAGTGATGTTTTTCTATACGTGTAAGTTGAGATATTAGATGAGTAAGTTCCT CGCGGGAAGCATAATCAACTATAACATTGGGTATTCCCAAAATATTTAATGTAAGAATGAGAACTTGATCAATAGGTGAA CTCAATATAAACCTGAAATTTGCAATTAGAGACGGCGTTTTTTTGTTGCCTGCAGCCGTTGCAGATGCTCACAGTAACAA CTTTTCCACATGCCCCTGCAAATTCATTCACCCCGTAGCATGTCTTCGATTTCTCAGCTGATAACACTGCCATTCTTCAG TTCATTCCACTTTTTAAGATGTTGCTTTAATCCAACACTCTTGCTCGTTATAAATTGTCACATGATGTCTGTATACATCT CATATGGGAATTTGATTTTTTATTTCCATGGTTGGGTTAGCAGTGGTGCTTGCTTGATTTCCCAGGTAAAAGATGATGGC GAATTGGAGAGGGGACGAGGGTGATGGAGATTCAGTAGTGTTAGAGTGCAGGGAAGGGGAAAAACGGATCTGGT
CDS sequence (LotjaGi4g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCCGCAGCACCGCCGTCAGATCCCGCCGCCGCATCTTCCAAGCACCACACCTACAATCGCAAGCAAAAATCCCT CGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGAGACAATATCCACTTGATCGGTCTCGACGACGCCGCTTCCA GATTAGGGGTTGAGAGAAGACGGATCTACGATATAGTCAACGTTTTGGAGAGCATTGGAGTTCTCTCAAGAAAAGCCAAG AATCAATACACCTGGAAAGGCTTTCGCGCAATTCCCCTCGCTTTGCAGGAGCTCAAGGATGAGGGTTTAAGGGAGAAATC TAGTGACTTTGATGGTGGTAATGACTCTGGAAAAGTGTCAGATGATGAGGATGACGAGGAAGGATTTGGGAACCCCAGTA CTGGAAGTCAGAATGAGAAGTCGATGTCCAATTCCACTCTTCCCAGATCTATGAAAAATGATAACCGAAGGGAAAAGTCT CTGGCCCTGCTCACTCAGAATTTTGTGAAGCTCTTCCTCTGCTCCAACGTGGAAATGATCTCCCTTGATGATGCGGCGAA ATTGCTTCTTGGGGATGCCCATAATACATCAATAATGAGAACGAAAGTTAGGCGCCTATATGATATTGCAAATGTGCTAT CTTCCATGAGCCTTATTGAGAAGACACATACAAAGGACACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAAAGGGAGG ACAGGGAATGAATCAATTAGCACTTCAAATCTCAACGAGTCTAGGAAAAGGGCATTTGGAACTGATGTCACAAACATCAG CTTTGCTAGGAATAGAACAGATTTATTCATGAATGGAGACTTCGGCCAGAACTCTAAGAAGCAAAAAATTCTGGAAAATG ATGGTGTCCTTAGTCAGGCAGATAAAAGCAATTTACAACAAGACACCAAACAGACTTATCAGTTTGGTCCTTTCGCTCCA GCCTACGTATCCAAAGCTGGAAACTCTGAGAACAGTAATGTGAAGCAAGTGCATGACTGGGAGAGTCTGGCAACTGCACA CTGCCCTCGGTATCAAAACCAAGCTTTAAAAGAACTTTTCTCCCATTACATGGAAGCATGGAGATCGTGGTACTCTGAAG TTGCTGGGAAGAGATCAATACAAACTTTGTAG
Protein sequence (LotjaGi4g1v0236800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAAPPSDPAAASSKHHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAK NQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGSQNEKSMSNSTLPRSMKNDNRREKS LALLTQNFVKLFLCSNVEMISLDDAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGR TGNESISTSNLNESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQTYQFGPFAP AYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWRSWYSEVAGKRSIQTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 376 | 362 | 4.1E-132 | – | |
| PANTHER | 15 | 376 | 362 | 4.1E-132 | ||
| Gene3D | 16 | 89 | 74 | 7.7E-27 | ||
| SUPERFAMILY | 21 | 85 | 65 | 2.33E-16 | ||
| SMART | 22 | 87 | 66 | 1.2E-28 | ||
| Pfam | 23 | 87 | 65 | 1.1E-20 | ||
| MobiDBLite | 104 | 155 | 52 | - | – | |
| MobiDBLite | 130 | 150 | 21 | - | – | |
| Gene3D | 150 | 238 | 89 | 1.0E-23 | ||
| SMART | 156 | 236 | 81 | 4.6E-32 | ||
| SUPERFAMILY | 158 | 237 | 80 | 5.83E-13 | ||
| Pfam | 158 | 236 | 79 | 7.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Transcription factor complex | A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0236800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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