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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0241600 |
| Transcript ID | LotjaGi4g1v0241600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Microtubule-associated protein TORTIFOLIA1; TAIR: AT5G62580.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q6NPR6|TORL3_ARATH TORTIFOLIA1-like protein 3; TrEMBL-Plants: tr|A0A072URB3|A0A072URB3_MEDTR Microtubule-associated TORTIFOLIA-like protein; Found in the gene: LotjaGi4g1v0241600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:58986349..58991223) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAGTCAGCACCATGAAAACAATCCCAACCAGCTATTGAGTAGAGTGAAAAAAAGGAGCCACAAAAAAAAAATTCCCA GACAAAACCAACCCATGTCGTATTCAACTAAACGACACCGTATCTCATAACTAGTAAACGACACCGTTTCCTTCTTCAGC TTCACTCCACATTCCACAACAACTGCTCATATAACCGTTCCCCTCCATTCACTCCCCTCAGAATCCAACGCACCAGTCAC CGGCGATGTCACCGGAAAATTCACCTCCGCCGCCGCGAAAATAACTCCTCCGCCACCGGAACTCCCACCTCCGCCATCTC CATCTTCACAATGTCAACACCTCAGACCATAAAACAGAGGGTCCTCGGGTGCCTGACCAAGCTCTCCGACCGCGACACGC ACTCCCTCGCCGTCGCCGAACTCGAGTCCATCGCACGGAATCTCGACGCAGCCACCGTGCCGGCGTTCCTCTCTTGCATT TACTCCACCGACGCCACCGACAAATCACCAGTTCGCAAGCAATGCGTGCGCCTCGTAGCGTTCCTCTCCGAGGCTCACGG TAACGCGCTCTCTCCCTACCTCTCGAAAATCCTCGCCAGCATCATCCGCCGCCTCCGCGACCCGGACTCGTCGGTCCGAT CCGCGTGCGTCGACTCGGTCTCCGCATTGTCATGCCACGTCACGAAGCAACCGTTTGCTTCGTTCCTGAAGCCGTTGGCG GAGGCTCTGTTCACGGAGCAGGACCAGAACGCGCAGGCTTGCGCGGCGCTGTGTTTAGCTTCGGCGATTGACGGAGCTCC GGATCCGGATCCTGCCAAGCTGGGGAAACTGTTACCGAGATTCGAGAAGCTTCTTAAGCGTGACGGGTTTAGGGCGAAGC CTGCGCTATTGACACTGATCGGAAGCATCGTTGAGGCCGGTGGCGCGTCCGGTCAAGCGGTGTTGAAGAACTTGATTCCT TGCTTGGTGGAATCGTTGAGCAGCAACGATTGGGCGGTGAGGAAGGCTTCGGCGGAGGCGCTGGTGGTGTTGGCCACCGT GGAGAGGGAATTCTTGTCGGAATTCAAGGCTGAGTGCTTGAAAGTTTTTGAGAATCGACGATTTGATAAGGTTTGTTCCT GAAAATATTTCATATTCTTTCCTTCTTCTTCTTATCAATCAGAGAATTCAATTATGTGTTTATTTGTGGTGATCGGAAAA GTGAATTGAGTGTGGTTGTTATTTTGGTATAGGTAAAGTTGGTTCGTGAAGTTATGAATCAGATGTTGGAATCATGGAAG CAGATTCCTGATGTTTCAGATGAATTATCGCCACCTCCTCAATCACAATCTTCTTCAAAAGGTATTTAATCTTGGTTATC TTCTCTTTGATTGATTCTGTTGTTGTTGAGAATCTAAGATGAGTAAGAGTTAGATCTTTTTCCAGAAATAGAAACATTGA TTCCTTAATATGATAATATATAGAGGGTATGGAAAAATATAAATGGAGGTGATGCTCAATTTGGTGAATTTTGATCTGCA ATAAATTCATGTTTTTTGTTAACTGGAATGTATGATCAATCTGTTAAGTTGAATTGTGTTTGAGTGTTTTTAATACCACT TTCTGGGTTTATGGTATTATCTCAGGGAACGGAAGTGATGGGCATGGGCGCTACCCCCCAGTCTCTCAAAATTCATGTAG TCCTGGTTTAGTCATGGCTAATTTGCGGAAGAAATCTGCTTCTGTTAGCAGATTCAGTCCGCAAGATAGTTCTTCTGCTA GCAATGCTAAGAGTACAAAAGTGTTGAGTAGTAACAAGAGAATGAGTTCAGTTGCTTCATCACGAAAATTAAACCATAAG AATTGGGATGCTCAAATTTTCCAGTCCAATACTCCCTCCGCAGCCATGGCTGATCAGGGTGATCTTCAGGGTAAAAGCAG AATTTTTAAGCCAGAAGTTAAACGCGCACTAAAGTATGGTGGCTCCAAAGCTGGATCTCGTGTGGTTCCGTATCATGAAG AGAGTCAAGAGACTCAAGACGCAGTTTCTGTCAGTAATGACGTCTCTAAAGATCTCAATAGGAATGACAAAGAGAGTGAA GATTTGTCTTTGATCCGTGACCAGTTACTGCAAATTGAGAAGCAGCAGTCATATCTTGTTGATCTTCTGCAGGTTTGTAC CTAATGCTTCATACCAGGTTTATACATGTAGCATGTGTATCTGTCCTTTAATGTCCAACATGCTTACAGAAATTCATTGG AAGCTCACAAAATGGAATGCATTCTCTAGAGACTCGGGTACATGGCCTTGAGTTGTCATTGGATGAGATCTCTTATGATT TGGCTGTATCAAGTGGAAGGATGACTAGTTCTGATGCTCCTGCTCACACATGTTGCTTGCCACCCGGAGCAGATTTTTTG AGCTCCAAGTTCTGGAGGAGAACACAAGGCCGGTATTCAACCACACGGCTCTTTAGATCCGGTGGCATCGCATCACATGC TGCCATGCACTACAAAGCTGGTAGGAATGCTGAAACTAAGTTGACAAACAACGGATCCAGGCTTGATGGACGCTTCATCA CTAATCCGTTGGCAGAGATTCGTACAAATTCAAGGAGTTTTACTATATCAGAGCAAGTTTAAAAAGCAGGTTCGCTTAGT TTCTGTTGTCCTCTGGATAAAGCATTTAGTCTTGAGCCTATATTGACATGCAATTTTGAGATTAATGACACCAGTTGGAA TTTTGAATTACCTTACTTTTAACTTTCTTGCAGATGTGCTGCACAATCTAGAATGCAGGTTTGATCTTTTGATTCTCAAT CAGCAATCAGCTTTGATGGAAAATCCCTTAACTGGGGTGGTGTTGATTGGATCAAGCCTCTGATTTAACTTGCATATTTT CAATCAACAATTTATGACTTGGTCAGAATATTATAAATTGTTGTGCTACTTGGAAATAGTCCATGTAGTCTTGTTACTGG TGAAGAAGGACAGAACCTGGCTAGACCAGACATTCTATAGTCAATATACTTGTGCAGAGTTTCGTTATAAATCTTGGACC AGAACTGCAGAGTGACTTGACCTCGGCAGCTAGATACCACGAAGAGGGTGAATTTGTATATGCAGTGTATGTTTGGAAAT TCTTCCACGATTGATTCTGAAGGCATAATTAATTTTAAAAGGAAGCCTTAGCTTCTGAGTTTCAAAATTGATTGTGATAA AATATAAGTTGATTCAAACATGTGCTAGAATAGAGGTGAGACAGGTTGCATACGTTTCTTTTGGTTTTATGATTGCCATG CGTAGTGTATTCCAATTATGTTGCTTAAAGGGGACTTCACTGGCATGCGTTCCTGGCATTTCATTATTGGATAACAAAGC CTCTGTTATTCTCTCCTTCTCTCATCTTGCCTTTTGTTTAGATTCTTTTCCAATATGAAGTCAAGGTTATTAGTTAGGCT TCTTTTTTTTTTTGGTCAATATTAGGTTAGGCTTCTAAAGTAGTTTAAAGGAAACGGATCCAATATGATTCTCTTGTGCA AACCCATGTCCAGCGATTTATAGGCTGGACTTGGAAACTTGGACTTGTTTATGGATGATTGATAGAGTGGAGCGATTTGT TGAATGATAGTAAATTCTAACCTTTTGAAAGAAAACATTTTTTTTTAATCTTCCATTAGTTACTGACTTAATTCAGTTAA GTACTTTAAAAGAAGAAAAAAAAAGTACTTATTATTGATCCATAAATATTTTTATATGTTATGATAAATTATGAAGATCT CTGTATAATTTTTTTCTAACAAAATTTAGATGGTTTTAACTTTTAACTTTTAAAATAAAATTTATAATTATAATTTAAAA TATTATAAATATATATAATTCACATTTATTTATTTGCTCATAAATAATCTAGCCACAACGACATAGGAACCACCTTAGTC AATCAGCGGCCTGCCCTCGGTGTTCGGTGACGGTTGAAGATGAGCACCACTTATTTCGTATCTGCCCAGCGCCCTCCTCC CTTTGGTCCCATTTCAGATCCATGCTTCTCTCTATTGCAGTCAACGAGCCGTTCCAGACCTGGTTCACGAAAGTTTTGTC TCAGTCACACAATGTTCTTGTTATTGTCGTGCTCTAATGGTCTTGGAAGTGGAGAAACAACTATATCTTTGAGGAACGGT CTTGTGATATCAGTTATGTTTTGGGACAGATCTTGTTGGATGCTCAGAGTTGGAGGTATTGGTCGTCTGCACATACGAGT TTGGGCCCCTCGTAGGCGCATGTTGCACCGGTTCTGACTGTGGTCGTGGTGGCCCCTGGTTCTGTGCCTTTGGTCCCCAA GCTACATGTTGCTGTTGATGGAAGTCGGAACTTGTTAGTCATGAGGATGGGGTGTAGCGTCGTCTTGCACAATGATGCTG GAATTTGGGTGTCAGGGACCGCGATGAGCTTTGATCATGGTAATGCTTTCTTAGCTGAAGTCTTGGCAGTGGAATTGGGG TTACAACATGGCTAGGATATTGGCAATAGGAGGATGGTTTGTGCTTTGAATTGCGCGAGCATGGTGGAGATTCTTGAATG TTGGGATGACATATCTACCTTATGGGCGAGGGATACACTTATGTGAGTTAGAGCCAGATGGGTTGGGATTGGATTGCTTC TCTTATCCATGTTCCCTGGGAGCATAACCACACGACAGATATGTTGGCACGACAAGCTTCTCGGGATGGAATGCAACGGC AGACTTGGAGGCATCCTCCCTCCAGTTTGATTGCTTCTTTGTATCATGGTGGCATAGTTTAGTTTTTTAAAAAATTGAGC TTGTTATTCGAAATTGGGACATGCTTTCATTTTTACATTAAACTATCAATATCAACGAGTTACCAAGAGTTATAA
CDS sequence (LotjaGi4g1v0241600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACACCTCAGACCATAAAACAGAGGGTCCTCGGGTGCCTGACCAAGCTCTCCGACCGCGACACGCACTCCCTCGC CGTCGCCGAACTCGAGTCCATCGCACGGAATCTCGACGCAGCCACCGTGCCGGCGTTCCTCTCTTGCATTTACTCCACCG ACGCCACCGACAAATCACCAGTTCGCAAGCAATGCGTGCGCCTCGTAGCGTTCCTCTCCGAGGCTCACGGTAACGCGCTC TCTCCCTACCTCTCGAAAATCCTCGCCAGCATCATCCGCCGCCTCCGCGACCCGGACTCGTCGGTCCGATCCGCGTGCGT CGACTCGGTCTCCGCATTGTCATGCCACGTCACGAAGCAACCGTTTGCTTCGTTCCTGAAGCCGTTGGCGGAGGCTCTGT TCACGGAGCAGGACCAGAACGCGCAGGCTTGCGCGGCGCTGTGTTTAGCTTCGGCGATTGACGGAGCTCCGGATCCGGAT CCTGCCAAGCTGGGGAAACTGTTACCGAGATTCGAGAAGCTTCTTAAGCGTGACGGGTTTAGGGCGAAGCCTGCGCTATT GACACTGATCGGAAGCATCGTTGAGGCCGGTGGCGCGTCCGGTCAAGCGGTGTTGAAGAACTTGATTCCTTGCTTGGTGG AATCGTTGAGCAGCAACGATTGGGCGGTGAGGAAGGCTTCGGCGGAGGCGCTGGTGGTGTTGGCCACCGTGGAGAGGGAA TTCTTGTCGGAATTCAAGGCTGAGTGCTTGAAAGTTTTTGAGAATCGACGATTTGATAAGGTAAAGTTGGTTCGTGAAGT TATGAATCAGATGTTGGAATCATGGAAGCAGATTCCTGATGTTTCAGATGAATTATCGCCACCTCCTCAATCACAATCTT CTTCAAAAGGGAACGGAAGTGATGGGCATGGGCGCTACCCCCCAGTCTCTCAAAATTCATGTAGTCCTGGTTTAGTCATG GCTAATTTGCGGAAGAAATCTGCTTCTGTTAGCAGATTCAGTCCGCAAGATAGTTCTTCTGCTAGCAATGCTAAGAGTAC AAAAGTGTTGAGTAGTAACAAGAGAATGAGTTCAGTTGCTTCATCACGAAAATTAAACCATAAGAATTGGGATGCTCAAA TTTTCCAGTCCAATACTCCCTCCGCAGCCATGGCTGATCAGGGTGATCTTCAGGGTAAAAGCAGAATTTTTAAGCCAGAA GTTAAACGCGCACTAAAGTATGGTGGCTCCAAAGCTGGATCTCGTGTGGTTCCGTATCATGAAGAGAGTCAAGAGACTCA AGACGCAGTTTCTGTCAGTAATGACGTCTCTAAAGATCTCAATAGGAATGACAAAGAGAGTGAAGATTTGTCTTTGATCC GTGACCAGTTACTGCAAATTGAGAAGCAGCAGTCATATCTTGTTGATCTTCTGCAGAAATTCATTGGAAGCTCACAAAAT GGAATGCATTCTCTAGAGACTCGGGTACATGGCCTTGAGTTGTCATTGGATGAGATCTCTTATGATTTGGCTGTATCAAG TGGAAGGATGACTAGTTCTGATGCTCCTGCTCACACATGTTGCTTGCCACCCGGAGCAGATTTTTTGAGCTCCAAGTTCT GGAGGAGAACACAAGGCCGGTATTCAACCACACGGCTCTTTAGATCCGGTGGCATCGCATCACATGCTGCCATGCACTAC AAAGCTGGTAGGAATGCTGAAACTAAGTTGACAAACAACGGATCCAGGCTTGATGGACGCTTCATCACTAATCCGTTGGC AGAGATTCGTACAAATTCAAGGAGTTTTACTATATCAGAGCAAGTTTAA
Protein sequence (LotjaGi4g1v0241600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTPQTIKQRVLGCLTKLSDRDTHSLAVAELESIARNLDAATVPAFLSCIYSTDATDKSPVRKQCVRLVAFLSEAHGNAL SPYLSKILASIIRRLRDPDSSVRSACVDSVSALSCHVTKQPFASFLKPLAEALFTEQDQNAQACAALCLASAIDGAPDPD PAKLGKLLPRFEKLLKRDGFRAKPALLTLIGSIVEAGGASGQAVLKNLIPCLVESLSSNDWAVRKASAEALVVLATVERE FLSEFKAECLKVFENRRFDKVKLVREVMNQMLESWKQIPDVSDELSPPPQSQSSSKGNGSDGHGRYPPVSQNSCSPGLVM ANLRKKSASVSRFSPQDSSSASNAKSTKVLSSNKRMSSVASSRKLNHKNWDAQIFQSNTPSAAMADQGDLQGKSRIFKPE VKRALKYGGSKAGSRVVPYHEESQETQDAVSVSNDVSKDLNRNDKESEDLSLIRDQLLQIEKQQSYLVDLLQKFIGSSQN GMHSLETRVHGLELSLDEISYDLAVSSGRMTSSDAPAHTCCLPPGADFLSSKFWRRTQGRYSTTRLFRSGGIASHAAMHY KAGRNAETKLTNNGSRLDGRFITNPLAEIRTNSRSFTISEQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 277 | 276 | 1.9E-18 | ||
| PANTHER | 6 | 596 | 591 | 8.7E-232 | ||
| PANTHER | 6 | 596 | 591 | 8.7E-232 | – | |
| SUPERFAMILY | 7 | 273 | 267 | 3.04E-30 | ||
| Pfam | 85 | 109 | 25 | 1.3E-4 | ||
| Pfam | 208 | 236 | 29 | 2.3E-5 | ||
| MobiDBLite | 278 | 315 | 38 | - | – | |
| MobiDBLite | 284 | 315 | 32 | - | – | |
| MobiDBLite | 329 | 364 | 36 | - | – | |
| MobiDBLite | 419 | 445 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Molecular function | Microtubule binding | Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers. |
Expression pattern of LotjaGi4g1v0241600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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