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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000357
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We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.691s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0359049.1
n.a. PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cicer arietinum] gi|502093420|ref|XP_004489938.1| chr0 189016041 189019883 -
2 domain predictions
1 GO term
Lj2g3v0742070.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356520585|ref|XP_003528942.1| chr2 11733369 11742399 +
2 domain predictions
1 GO term
Lj2g3v0878940.1
n.a. PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Glycine max] gi|356497575|ref|XP_003517635.1| chr2 13503623 13511160 -
2 domain predictions
1 GO term
Lj2g3v1155670.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356499699|ref|XP_003518674.1| chr2 18333487 18339185 +
2 domain predictions
1 GO term
Lj4g3v1562770.1
n.a. PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cicer arietinum] gi|502152205|ref|XP_004508815.1| chr4 23303800 23306224 +
2 domain predictions
1 GO term
Lj4g3v2604270.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502140730|ref|XP_004504314.1| chr4 35157273 35165829 +
2 domain predictions
1 GO term
Lj5g3v2217170.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1 [Cicer arietinum] gi|502120866|ref|XP_004497109.1| chr5 31915139 31921893 +
2 domain predictions
1 GO term
Lj5g3v2246110.1
n.a. PREDICTED: transportin-1-like isoform 1 [Glycine max] gi|356536398|ref|XP_003536725.1| chr5 32594587 32609496 +
2 domain predictions
1 GO term
Lj6g3v2274460.1
n.a. PREDICTED: probable importin subunit beta-4-like [Glycine max] gi|356558485|ref|XP_003547537.1| chr6 26460405 26467503 -
2 domain predictions
1 GO term
LotjaGi1g1v0643800.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi1g1v0643800 LjG1.1_chr1 120112733 120124670 -
2 domain predictions
1 GO term
LotjaGi1g1v0700900.1
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126892954 126910972 -
2 domain predictions
1 GO term
LotjaGi1g1v0700900.2
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126892954 126910972 -
2 domain predictions
1 GO term
LotjaGi1g1v0700900.3
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126893119 126910062 -
2 domain predictions
1 GO term
LotjaGi2g1v0119400_LC.2
n.a. Importin subunit alpha; TAIR: AT1G50240.2 kinase family with ARM repeat domain-containing protein; Swiss-Prot: sp|Q2QAV0|TIO_ARATH Serine/threonine-protein kinase TIO; TrEMBL-Plants: tr|A0A0S3STR7|A0A0S3STR7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0119400_LC LjG1.1_chr2 43740694 43744439 +
2 domain predictions
1 GO term
LotjaGi2g1v0210500.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756005 65764457 +
2 domain predictions
1 GO term
LotjaGi2g1v0210500.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756425 65762988 +
2 domain predictions
1 GO term
LotjaGi2g1v0210500.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756431 65763590 +
2 domain predictions
1 GO term
LotjaGi2g1v0226200.1
n.a. Kinase family protein; TAIR: AT4G29380.1 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|I1KJQ8|I1KJQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68334682 68343082 -
2 domain predictions
1 GO term
LotjaGi2g1v0226200.2
n.a. WD repeat-containing protein 3; TAIR: AT4G29380.2 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|A0A0B2PYS8|A0A0B2PYS8_GLYSO Putative serine/threonine-protein kinase vps15; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68335462 68339918 -
2 domain predictions
1 GO term
LotjaGi2g1v0226200.3
n.a. Kinase family protein; TAIR: AT4G29380.1 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|I1KJQ8|I1KJQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68335462 68342771 -
2 domain predictions
1 GO term
LotjaGi2g1v0278900.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75033918 75040553 +
2 domain predictions
1 GO term
LotjaGi2g1v0278900.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034447 75039764 +
2 domain predictions
1 GO term
LotjaGi2g1v0278900.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.2 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034450 75039345 +
2 domain predictions
1 GO term
LotjaGi2g1v0278900.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034456 75039764 +
2 domain predictions
1 GO term
LotjaGi2g1v0311800.1
n.a. Microtubule-associated protein TORTIFOLIA1; TAIR: AT1G27210.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q93ZH1|TORL4_ARATH TORTIFOLIA1-like protein 4; TrEMBL-Plants: tr|G7K6Y7|G7K6Y7_MEDTR Microtubule-associated TORTIFOLIA-like protein; Found in the gene: LotjaGi2g1v0311800 LjG1.1_chr2 78606651 78610885 +
2 domain predictions
1 GO term
LotjaGi4g1v0241600.1
n.a. Microtubule-associated protein TORTIFOLIA1; TAIR: AT5G62580.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q6NPR6|TORL3_ARATH TORTIFOLIA1-like protein 3; TrEMBL-Plants: tr|A0A072URB3|A0A072URB3_MEDTR Microtubule-associated TORTIFOLIA-like protein; Found in the gene: LotjaGi4g1v0241600 LjG1.1_chr4 58986349 58991223 +
2 domain predictions
1 GO term
LotjaGi4g1v0376600.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|I1KSC8|I1KSC8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0376600 LjG1.1_chr4 75562541 75569098 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.1
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781442 38796807 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.2
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781504 38796379 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.3
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781755 38792142 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.4
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781755 38795914 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.5
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781755 38795914 +
2 domain predictions
1 GO term
LotjaGi5g1v0149400.6
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|A0A072VLE8|A0A072VLE8_MEDTR CLIP-associated protein; Found in the gene: LotjaGi5g1v0149400 LjG1.1_chr5 38781755 38795914 +
2 domain predictions
1 GO term
LotjaGi5g1v0341300.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65862419 65870375 +
2 domain predictions
1 GO term
LotjaGi5g1v0341300.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863048 65868877 +
2 domain predictions
1 GO term
LotjaGi5g1v0341300.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863051 65868811 +
2 domain predictions
1 GO term
LotjaGi5g1v0341300.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A072W1U6|A0A072W1U6_MEDTR Serine/threonine protein phosphatase 2A regulatory subunit A; Found in the gene: LotjaGi5g1v0341300 LjG1.1_chr5 65863057 65868877 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.1
n.a. Importin beta-1, putative; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66630987 66648951 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.3
n.a. Transportin-1; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66631254 66648097 +
2 domain predictions
1 GO term
LotjaGi5g1v0350400.4
n.a. Importin beta-1, putative; TAIR: AT2G16950.2 transportin 1; Swiss-Prot: sp|Q8H0U4|TNPO1_ARATH Transportin-1; TrEMBL-Plants: tr|A0A151TQB2|A0A151TQB2_CAJCA Transportin-1; Found in the gene: LotjaGi5g1v0350400 LjG1.1_chr5 66631254 66648097 +
2 domain predictions
1 GO term