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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0246900 |
| Transcript ID | LotjaGi4g1v0246900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT3G01270.1 Pectate lyase family protein; Swiss-Prot: sp|P15722|PLY59_SOLLC Probable pectate lyase P59; TrEMBL-Plants: tr|A0A0B2PI51|A0A0B2PI51_GLYSO Pectate lyase; Found in the gene: LotjaGi4g1v0246900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59827644..59832781) extracted from Lotus japonicus Gifu genome v1.2.
AGATATAGTGCTTAGAGGATCTAATAATATCGCATCCGTAGGGCCTAGCACAAAGTTAGGGAGTTGATCAACTTTATAGA TAAAACAAACATAAGCAAGACACAAAAGGACTAGTTGTTGTTGAGGAGAAAAGAAACATTGATTGGAATAATGGAAGCTA CCAAGCTTAGATTGCTCTTATTTTTTGTATTATATCTTGTTGCATTCCCTACCCTGAGGGCTAACATAGCTCAATTCGAC CAAGTTTGGCAGGAGCGATCTCAGCATGCCAAAAGTGCAGCACTACAGGCTTATAGGCCAAACCCTGAGCAAGTTACTGT TGATTTCAATAAGCATGTGAACGAGTATGTTTTTTTATCTCTCCTATGCTGCAAAAACATGAAGCAACTAATCTTTATAT TTAAAGAAAAATCCATTTTAGCATGAATAACTTACTTAAATGAAAATTATAAGTTGAGAAAATGAAAGTGCCACATAGGT TATTTTCAAATCCCAAGGTTCGATCTCGCTTATGACAAATAAGAGGGTCTAAATGTAACTCCACTTTAAGAAAATTCAGT TGGTACAATCACCTTCAACCGAGGAATGGGGGACATGGTGGTGTCATGACTCATGATCCCCAAGTTTTTAAATTTTATGT TTTTTTACATGTCATACACATGTATTTAAGGTGTAGAAGTTATTGTAGGCATGTTGTATTATTTGTTTTTGGCCCCTCTT TAATCTTGGTCCCCTAATCTCAAATTCATGTCTCTGTGTCACTGATAGTCACGAGATATGAGTCATTGTTGAAGAGTAAG AATTCATTACAAGTAGTTCGATCTTCATCTAATTAGTCACATCTCGTGACAACCTCCAAAATAATTTAGACAAATCAAAT CCTTTTTTAATTGCCATTTGAGTTTGGAAGCTTTCCTTGCCTTACAACACCACCTTCACCCATTTTATTAGGTTGTGTTT GAATACGCATTGGCAACCATATATATTGATATTAACACATGCTTTAAGATTAAAAAAATGAATGAAACTCTTTTTATCAG TTTAGATATTAGTCAGTTAACATTACACTCAACTAATCACTACCCAAACACACTTCTTTTTAAAAGAATACAGTAATTCA CATAAACAACTTTCACATTGACATATACCCCTCATGGTTGACTTCTTTCTCAAGCTCAAATTAGCTTGTGAGTGAGACTA GGTCAATAATTTCCTTCATATATAACCAATGGTGATATGTGTGAAACTTCCTAATGTCCAAATGAAATACCACTGTATAG GAATATGAATGGCTCCAACAACACAAGGAGGGGTTTAACATCCAAGTACACAGGTCCATGCACGGCCACAAACCCCATCG ACAGTTGTTGGAGATGTGATCCAAACTGGGAAAAGAACCGCAAGAAGCTAGCAGATTGTGCCATGGGTTTCGGTCACGGC ACAACCGGAGGCAAAGCCGGCAAAATCTATGTTGTCAATGACCCCTCCGACCATGAACTCATCAACCCAAAACCAGGGAC ATTAAGACACGCTGCAATTCAAAAGGAACCATTGTGGATCATTTTTGCACATGACATGACCATCAAACTAAGTGCAGAGC TCCTACTAACTGATGACAAGACCATAGATGCACGCGGCGCAAACGTTCATATCAGTCATGGTGCTCAAATCACAATGCAG TATGTGAAAAACATAATCATTCATGGTTTGCACATTCATGATATCAAAAAATCTGGTGGTGGCATGATTAGGGACTCGGT GAATCACGTTGGAGTCCGCACGCAGAGTGATGGTGATGGAATTTCAATGTTTGGAGCTACTCACGTTTGGATTGATCATA TTTCTTTGTCCAATTGTGATGATGGTCTAGTTGATGCTGTGGAGGGATCAACAGCTATCACCATCTCTAATTGCCACTTG ACCCATCATAATGATGTAAGTAACATCAATTCTATGCATACATGTTTGAATCAACTTTTCATTTCTCATATTCTCGCACC CAAAAGCTACTTAGATAAGTTGTCTCCCTATAATTTATTTTGGCATTCATGTGTAGAACTTTTGTCATGCAGGTTATGTT GTTTGGAGCAAGTGATGTGTTTTCAGGAGATAAAGTGTCGCAAATAACCGTGGCTTTCAACCATTTTGGGCAAGGACTGG TACAGAGGATGCCAAGGTGCAGGTGGGGTTTCTTTCACGTTGTCAACAATGACTACACTCACTGGCTAATGTATGCCATT GGTGGTAGCTCACATCCCACCATCATTAGCCAGGGTAATCGCTTTATTGCTCCTCAAAACTCAGCTGCTAAGGAGGTATG AAGGCAAAAGTTCAATTCTCTTTTATGAGTTTGTCAAATTGATTTCTCTATGGCTTTCACACGATGTTATTAAACTCGGA CTGTTCATAATTTAGGTGACAAAGAGAGATTATGCACCTGAAAGTGTGTGGAAGTCATGGAATTGGAGATCAGAGGGTGA CTTAATGATGAACGGAGCCTTCTTTGTTGAGTCTGGAAGTAAGGTCGCAAACATCAAAACAGACATTGTTGCAAAGCCTG GGACCTTTGCAGCAAGCCTAACTCGCTTTGCAGGTGCTCTAAAATGTGTAGTAAATAAGCCATGCTGACAAACACAGCTC TCTGGATGCTGGAACAGAGGCTGATCCAGGTTGTAGCACTAGTACTAGTAATAGACCCGAAGCTGTGCTTCCGAGGTGTT TCTCATTTTTCTTTAACTCTTGTTTGAACATCATGTACAAAAGATTAGAGGAACTAAAATATAGGAAGTAAATGCATGCA AATTCTATGGAGGCACAGGTACAGCTATCAATCCCATTGTACATTCGTATCTATGAATTCAACAGCACATGAGTGTTCAT CTTTGAAGTTCCATTTTAAGGAGGGATGGCAACAAGAGTCTATTTCCATTTCTGACGAAAAAAATATTCAATGTCTACAA AGGGTTAGAAAACACATCCCCCTCATATCAACCTTTTTGCTAAAATTTTACATCATTTTACAAAAGTTGAGGCTGGGGAT AGCATGTTGCTTTTCCAGCTAACCAAACGATTCAACTTTCTTCTTTTCTTAAACTAGTCCAATACATGGAAGGTATATAA ATTCAACATAGCTGTATGAATCACAAGTAAGCCAAAATTCCGAATCAATCATCCTCCACATTAAGACCACCAATCCGGTG CCGTCTCCTGTCAAAAACAGCTTTGAAAGATTCACGTTCAGCCCGGATTCGATCTTGAAATGTGTTGTTCTTCTTTGGCT CTGCACTATTACGGGTTGAACTATCCTCTTGTGGTAATGGATTTGTGTTCTGTACATAAATACGGAATAAAATGGTCTAA AATATCTTTACCATGGAAACAAACAAGATTTTCATCCTTGTTTAAGAAAATAGTAGAGTAAAAAGAATTGCTTAAGAGTC AAACAACGGATAAACTTCTTAAAAAAGATAGGAAGAAAATGTACAAATATCAACCAAATGTCTGGCTCAGATAGATTATC AGAAATAACAAAAAGAAAAAGACAACTAAATAACAGTAAATGATGCTTCTGAAATTTAAGAAATAGGAAGTCAAACAACT AACCAGGTTGTATCCAGCACCAGGTCCAATCACTAAAGACAAAGCATTTACCTTCCTGGCAGAGCCAATTGAAAACCCTG TATTGCCAGCCTGAAAAGATAATTGCAAAGAAAGGGGGCGGGGATGCTGAGATTAAGCAACTGCCTATAATGAAAGAAAT CAAATCACTTGTCCCCTTTTTTGTCCATAGTCTTGTCCCTCTGAACTAAAAGAGAGAATATTATACTAATTAAAGGGGGA AATTTTAAGGGATGCATTATTTTTCAATAGGAGGGACAAAGAAGGGGACAGATGATTTCAGTTCATAACGAAACCCACAA AAGCAGGTTGTACCCCTGTTTCTATTGTAGCTGGGTTTCAATACAATACCAAACTTAATAATTAAAGGACACTCTTTGAT TATTTATAACGGTTTGACTAATTTCCCTTTCTATATTGCAGTGTCCGACATGCCTAAAAGAAGCAAAGATTAAAAAATGC AATCAACGAGATGAGAGCAGAGTAGAAAAAGGATAGTAAAAATGCATCTAGAAAAACAAATATGTACATATATATATATA TTAGAATCTGAAAAATTAAGAACCAATTAGCTAATGACACACATGGTACTGAACACCGTCTGTACTATTGTATACTTGAT GTCTCAGTTCAATCCCTGCACCACCCCCTCCCAAGAATTTGTATTGTAACCTAAAAAGAATTTAAACGAGAACGCAAATT TTTGCTACCAAAGTATTAAGGTTGTGACAGACTTTAAATGTTACTTTGTAAGCTTTCAGACAACATCATTAAATACACGT CATACCTGGTCACCCCAATGTACAGATTTTTGTTCCTTGCCATATTGATGAATTAACCCAGAAAGAGCATTAATATTGCC CTTCATACCTTCAGTGTGAACAATGTCATCTTCAGCAAAATCTTCTGACCATTTGCTTTTACCCAATTCTCTGACTTCCA TTACATGTTCCTCTTCAGCACTCCATCTTTTTCCATCCTTTACAGGACCTAAAATTCAAAGAGCTAATCACATAAACATG AAAGACACGAAAGTAACACAAACATACAAACTTCATTAAATTATAATTCAAAGATGATACTGTATACGCACAGGATATAC TAAGTGATACTGGCTTTATATCAAAAGTTGAAAATGGCTGCATTTTTACTGACAACATACAAATTGAGAAGCCGAATACC AATGATAGGAGGTAAGGGTTGATACTTGACAACATTATAATTTTACACATTAAAAAGAAAGGGCACAACCCAAAACTGAG GAAACAAAAAACAAGAAGCTGCAACAAGATAGACAACTATGTTACAGTTGGGTATCAGTGATAACTGATAAGATGCGCCC AGGAAATACGATACCAAATCATTAGCACCATAGATAAACATAGCCATACAAACATTAATGGGTTAAAGCACACTACCTGC ATCATCCCTGACTGGAGGGTTAACAACTGTCTCAGCTTCTCTTCCTTGCACTGCAGGTAAAGCCTCACCAAGATCATCTT CCATATCCATGTCAACCT
CDS sequence (LotjaGi4g1v0246900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTACCAAGCTTAGATTGCTCTTATTTTTTGTATTATATCTTGTTGCATTCCCTACCCTGAGGGCTAACATAGC TCAATTCGACCAAGTTTGGCAGGAGCGATCTCAGCATGCCAAAAGTGCAGCACTACAGGCTTATAGGCCAAACCCTGAGC AAGTTACTGTTGATTTCAATAAGCATGTGAACGAGAATATGAATGGCTCCAACAACACAAGGAGGGGTTTAACATCCAAG TACACAGGTCCATGCACGGCCACAAACCCCATCGACAGTTGTTGGAGATGTGATCCAAACTGGGAAAAGAACCGCAAGAA GCTAGCAGATTGTGCCATGGGTTTCGGTCACGGCACAACCGGAGGCAAAGCCGGCAAAATCTATGTTGTCAATGACCCCT CCGACCATGAACTCATCAACCCAAAACCAGGGACATTAAGACACGCTGCAATTCAAAAGGAACCATTGTGGATCATTTTT GCACATGACATGACCATCAAACTAAGTGCAGAGCTCCTACTAACTGATGACAAGACCATAGATGCACGCGGCGCAAACGT TCATATCAGTCATGGTGCTCAAATCACAATGCAGTATGTGAAAAACATAATCATTCATGGTTTGCACATTCATGATATCA AAAAATCTGGTGGTGGCATGATTAGGGACTCGGTGAATCACGTTGGAGTCCGCACGCAGAGTGATGGTGATGGAATTTCA ATGTTTGGAGCTACTCACGTTTGGATTGATCATATTTCTTTGTCCAATTGTGATGATGGTCTAGTTGATGCTGTGGAGGG ATCAACAGCTATCACCATCTCTAATTGCCACTTGACCCATCATAATGATGTTATGTTGTTTGGAGCAAGTGATGTGTTTT CAGGAGATAAAGTGTCGCAAATAACCGTGGCTTTCAACCATTTTGGGCAAGGACTGGTACAGAGGATGCCAAGGTGCAGG TGGGGTTTCTTTCACGTTGTCAACAATGACTACACTCACTGGCTAATGTATGCCATTGGTGGTAGCTCACATCCCACCAT CATTAGCCAGGGTAATCGCTTTATTGCTCCTCAAAACTCAGCTGCTAAGGAGGTGACAAAGAGAGATTATGCACCTGAAA GTGTGTGGAAGTCATGGAATTGGAGATCAGAGGGTGACTTAATGATGAACGGAGCCTTCTTTGTTGAGTCTGGAAGTAAG GTCGCAAACATCAAAACAGACATTGTTGCAAAGCCTGGGACCTTTGCAGCAAGCCTAACTCGCTTTGCAGGTGCTCTAAA ATGTGTAGTAAATAAGCCATGCTGA
Protein sequence (LotjaGi4g1v0246900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEATKLRLLLFFVLYLVAFPTLRANIAQFDQVWQERSQHAKSAALQAYRPNPEQVTVDFNKHVNENMNGSNNTRRGLTSK YTGPCTATNPIDSCWRCDPNWEKNRKKLADCAMGFGHGTTGGKAGKIYVVNDPSDHELINPKPGTLRHAAIQKEPLWIIF AHDMTIKLSAELLLTDDKTIDARGANVHISHGAQITMQYVKNIIIHGLHIHDIKKSGGGMIRDSVNHVGVRTQSDGDGIS MFGATHVWIDHISLSNCDDGLVDAVEGSTAITISNCHLTHHNDVMLFGASDVFSGDKVSQITVAFNHFGQGLVQRMPRCR WGFFHVVNNDYTHWLMYAIGGSSHPTIISQGNRFIAPQNSAAKEVTKRDYAPESVWKSWNWRSEGDLMMNGAFFVESGSK VANIKTDIVAKPGTFAASLTRFAGALKCVVNKPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 5 | 434 | 430 | 4.4E-224 | – | |
| PANTHER | 5 | 434 | 430 | 4.4E-224 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 434 | 410 | - | – | |
| Pfam | 25 | 77 | 53 | 1.1E-19 | ||
| Gene3D | 88 | 427 | 340 | 7.5E-115 | ||
| SUPERFAMILY | 89 | 425 | 337 | 1.59E-94 | ||
| PRINTS | 111 | 128 | 18 | 1.9E-73 | ||
| PRINTS | 135 | 160 | 26 | 1.9E-73 | ||
| SMART | 163 | 360 | 198 | 1.0E-96 | ||
| PRINTS | 171 | 187 | 17 | 1.9E-73 | ||
| Pfam | 184 | 354 | 171 | 2.0E-16 | ||
| PRINTS | 235 | 256 | 22 | 1.9E-73 | ||
| PRINTS | 315 | 334 | 20 | 1.9E-73 | ||
| PRINTS | 337 | 356 | 20 | 1.9E-73 | ||
| PRINTS | 379 | 403 | 25 | 1.9E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectate lyase activity | Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. |
Expression pattern of LotjaGi4g1v0246900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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