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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248500 |
| Transcript ID | LotjaGi4g1v0248500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G74630.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630; TrEMBL-Plants: tr|A0A0L9TRR1|A0A0L9TRR1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0248500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60126737..60128659) extracted from Lotus japonicus Gifu genome v1.2.
TTGGAACCACGATGGGTTTCATTGTTGAGCAAGTGCAGCAGCCTCAAACCCACGAAGCAAATCCACACCCACCTCTACGT AACCGGCCTTCACACCCACCCCTTGTTCTTCGGGAAGCTTCTTCTCCACTGCGCCGTCACCATCTCCGATGCTCTCCACT ACGCTCTCCGTCTCTTCCAACACTTCCCCAACCCCGACACCTTCATGTACAACACTCTCATTCGTGCACTCGCTCTCTCT TCAACCCCTCTCTCCTCCCTTCAGCCCTTCATTCAAATGCGTCGCCACCCTACCGTCTTCCCTGACAGCTTCTCTTTCGC CTTCGCTCTTAAAGGTGTTGCCAATGGCGGCAGTTTGAAACCCGGCACTCAGCTGCATTGTCAGGCCTTTCGGCATGGCT TTGATACCCATGTCTTCGTTGGGACAACCTTGATCAGCATGTACGGTGAATGTGGGGATTCTGAGTCTGCTCGACGGGTG TTTGATGAAATGCCTGAACCGAATGTTGTCACGTGGAACGCTGCTGTGACTGCGTGTTTTAGGTGTGGGGATGTGGCGGG CGCGCGGGGCGTGTTTGGACGGATGCCCGTTAGGAATTTGACATCGTGGAATGTGATGCTTGCTGGTTACACTAAAGCAG GTGAGCTTGGGTTGGCAAGGAGAGTTTTTTCTGAAATGCCTTTGAAAGATGATGTTTCTTGGAGCACTATGATTGTTGGG CTTGCTCACAATGGTTCTTTTGACCAAGCTTTTGGGTTTTTCAGGGAGTTGCTGCGCGAGGGAATCAGGCCGAATGAGGT AAGCCTCACTGGGGTGTTGTCTGCTTGTGCACAAGCTGGGGCATCTGAGTTTGGGAAGATTTTACATGGGTTTATGGAGA AATCTGGGTTTCTTTATATTTCTTCTGTGAATAATGCTCTCATAGATACCTACTCCAAGTGTGGGAATGTAGCTATGGCA CAGTTGGTCTTCCGAAATATGTCGGTGGGAAGGAGCATTGTGTCTTGGACATCGATCATAGCAGGCCTTGCGATGCATGG TCACGGAGAAGAGGCACTTCAACTTTTTCATGAGATGGAAGAATCAGGAGTTCGGCCGGATGGTATTACTTTCATATCTC TCCTATATGCTTGTAGCCATAGTGGCTTAGTTGAGCAAGGGTGTGAGATTTTTTCTAAAATGAAGAATTTGTATGGTATT GAACCTACCATTGAGCATTATGGCTGTATGGTTGATCTGTATGGTCGAGCTGCTAGGTTGCATAAGGCCTATGAATTTAT ATGTCAAATGCCAATTTCACCGAATGCAGTCATTTGGAGGACTCTGCTTGGGGCTTGTAGCATTCATGGTAATATTGAAT TAGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAACAATTCTGGTGACCATGTACTACTCTCGAATGTTTAT GCTGTTGCAGGGAAATGGAAGGATGTTGTCAGCATAAGAAGAACAATGACTGAACAGAGCATGGTAAAAACTCCTGGTTG GAGCATGATTGAAATTAACAAGGTCATGTATGGTTTTGTGGCGGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCTCATG ATAAACTGAGGGAAATAATGTTGAGACTCAGGGCAGAAGCAGGTTATGCCCCGCAGGTAAGGGGCGTCTTGCATGATATT GAAGAGGAAGAAAAAGAAGATTCAGTGTCTAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGCGAAACTTCCTAA GGGAAAACAATTAAGAATAGTGAAGAACCTGAGGGTGTGTGGGGACTGCCATACTGTGATGAAGCTAATTTCTAAATTTT ATCAAGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTTGTTCAAAGATGGATTGTGTTCTTGCAGAGATTACTGG TGA
CDS sequence (LotjaGi4g1v0248500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAACACTCTCATTCGTGCACTCGCTCTCTCTTCAACCCCTCTCTCCTCCCTTCAGCCCTTCATTCAAATGCGTCG CCACCCTACCGTCTTCCCTGACAGCTTCTCTTTCGCCTTCGCTCTTAAAGGTGTTGCCAATGGCGGCAGTTTGAAACCCG GCACTCAGCTGCATTGTCAGGCCTTTCGGCATGGCTTTGATACCCATGTCTTCGTTGGGACAACCTTGATCAGCATGTAC GGTGAATGTGGGGATTCTGAGTCTGCTCGACGGGTGTTTGATGAAATGCCTGAACCGAATGTTGTCACGTGGAACGCTGC TGTGACTGCGTGTTTTAGGTGTGGGGATGTGGCGGGCGCGCGGGGCGTGTTTGGACGGATGCCCGTTAGGAATTTGACAT CGTGGAATGTGATGCTTGCTGGTTACACTAAAGCAGGTGAGCTTGGGTTGGCAAGGAGAGTTTTTTCTGAAATGCCTTTG AAAGATGATGTTTCTTGGAGCACTATGATTGTTGGGCTTGCTCACAATGGTTCTTTTGACCAAGCTTTTGGGTTTTTCAG GGAGTTGCTGCGCGAGGGAATCAGGCCGAATGAGGTAAGCCTCACTGGGGTGTTGTCTGCTTGTGCACAAGCTGGGGCAT CTGAGTTTGGGAAGATTTTACATGGGTTTATGGAGAAATCTGGGTTTCTTTATATTTCTTCTGTGAATAATGCTCTCATA GATACCTACTCCAAGTGTGGGAATGTAGCTATGGCACAGTTGGTCTTCCGAAATATGTCGGTGGGAAGGAGCATTGTGTC TTGGACATCGATCATAGCAGGCCTTGCGATGCATGGTCACGGAGAAGAGGCACTTCAACTTTTTCATGAGATGGAAGAAT CAGGAGTTCGGCCGGATGGTATTACTTTCATATCTCTCCTATATGCTTGTAGCCATAGTGGCTTAGTTGAGCAAGGGTGT GAGATTTTTTCTAAAATGAAGAATTTGTATGGTATTGAACCTACCATTGAGCATTATGGCTGTATGGTTGATCTGTATGG TCGAGCTGCTAGGTTGCATAAGGCCTATGAATTTATATGTCAAATGCCAATTTCACCGAATGCAGTCATTTGGAGGACTC TGCTTGGGGCTTGTAGCATTCATGGTAATATTGAATTAGCAGAGCTTGTGAAAGCAAGGCTTGCTGAAATGGATCCAAAC AATTCTGGTGACCATGTACTACTCTCGAATGTTTATGCTGTTGCAGGGAAATGGAAGGATGTTGTCAGCATAAGAAGAAC AATGACTGAACAGAGCATGGTAAAAACTCCTGGTTGGAGCATGATTGAAATTAACAAGGTCATGTATGGTTTTGTGGCGG GTGAAAAGCCTAACGAGGTTACAGAAGAGGCTCATGATAAACTGAGGGAAATAATGTTGAGACTCAGGGCAGAAGCAGGT TATGCCCCGCAGGTAAGGGGCGTCTTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTGTCTAAGCACAGTGAGAA GCTTGCTGCAGCTTTTGGAATAGCGAAACTTCCTAAGGGAAAACAATTAAGAATAGTGAAGAACCTGAGGGTGTGTGGGG ACTGCCATACTGTGATGAAGCTAATTTCTAAATTTTATCAAGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTTG TTCAAAGATGGATTGTGTTCTTGCAGAGATTACTGGTGA
Protein sequence (LotjaGi4g1v0248500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNTLIRALALSSTPLSSLQPFIQMRRHPTVFPDSFSFAFALKGVANGGSLKPGTQLHCQAFRHGFDTHVFVGTTLISMY GECGDSESARRVFDEMPEPNVVTWNAAVTACFRCGDVAGARGVFGRMPVRNLTSWNVMLAGYTKAGELGLARRVFSEMPL KDDVSWSTMIVGLAHNGSFDQAFGFFRELLREGIRPNEVSLTGVLSACAQAGASEFGKILHGFMEKSGFLYISSVNNALI DTYSKCGNVAMAQLVFRNMSVGRSIVSWTSIIAGLAMHGHGEEALQLFHEMEESGVRPDGITFISLLYACSHSGLVEQGC EIFSKMKNLYGIEPTIEHYGCMVDLYGRAARLHKAYEFICQMPISPNAVIWRTLLGACSIHGNIELAELVKARLAEMDPN NSGDHVLLSNVYAVAGKWKDVVSIRRTMTEQSMVKTPGWSMIEINKVMYGFVAGEKPNEVTEEAHDKLREIMLRLRAEAG YAPQVRGVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGKQLRIVKNLRVCGDCHTVMKLISKFYQVEIIVRDRSRFHL FKDGLCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 28 | 28 | 5.853 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| Gene3D | 1 | 98 | 98 | 3.7E-10 | ||
| PANTHER | 3 | 129 | 127 | 1.2E-96 | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 572 | 553 | - | – | |
| ProSiteProfiles | 34 | 68 | 35 | 5.755 | ||
| ProSiteProfiles | 69 | 99 | 31 | 7.684 | ||
| TIGRFAM | 74 | 97 | 24 | 0.0014 | ||
| Pfam | 74 | 98 | 25 | 8.3E-4 | ||
| ProSiteProfiles | 100 | 134 | 35 | 9.536 | ||
| TIGRFAM | 102 | 131 | 30 | 0.0029 | ||
| Pfam | 102 | 131 | 30 | 0.0028 | ||
| Gene3D | 113 | 216 | 104 | 8.6E-24 | ||
| Pfam | 134 | 159 | 26 | 1.2E-4 | ||
| TIGRFAM | 134 | 158 | 25 | 9.5E-5 | ||
| ProSiteProfiles | 135 | 161 | 27 | 6.347 | ||
| PANTHER | 137 | 218 | 82 | 1.2E-96 | – | |
| Pfam | 161 | 209 | 49 | 3.4E-9 | ||
| ProSiteProfiles | 162 | 196 | 35 | 12.047 | ||
| TIGRFAM | 164 | 198 | 35 | 1.9E-7 | ||
| ProSiteProfiles | 197 | 231 | 35 | 6.654 | ||
| PANTHER | 216 | 428 | 213 | 1.2E-96 | – | |
| Gene3D | 217 | 325 | 109 | 6.0E-26 | ||
| ProSiteProfiles | 232 | 262 | 31 | 5.952 | ||
| Pfam | 237 | 259 | 23 | 0.28 | ||
| ProSiteProfiles | 264 | 298 | 35 | 12.671 | ||
| Pfam | 264 | 311 | 48 | 1.1E-11 | ||
| TIGRFAM | 266 | 299 | 34 | 4.5E-9 | ||
| ProSiteProfiles | 299 | 329 | 31 | 8.013 | ||
| TIGRFAM | 301 | 335 | 35 | 0.0016 | ||
| Gene3D | 326 | 404 | 79 | 3.5E-12 | ||
| ProSiteProfiles | 335 | 365 | 31 | 6.643 | ||
| Pfam | 338 | 362 | 25 | 0.77 | ||
| ProSiteProfiles | 367 | 397 | 31 | 6.095 | ||
| ProSiteProfiles | 401 | 435 | 35 | 5.645 | ||
| Pfam | 437 | 562 | 126 | 2.4E-34 | ||
| Coils | 458 | 478 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0248500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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