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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0248500 |
| Transcript ID | LotjaGi4g1v0248500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G74580.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580; TrEMBL-Plants: tr|A0A072URF5|A0A072URF5_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0248500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60128685..60131185) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCGTGCATTGCTTCCAAAGCACGTTGCAGCTGTGGTGAAAGCCCAGAAGGATCCTCTGAAAGCGTTGGAGATTTT CAATTCAGCGAAGAACGAAGATGGCTTCAACCACACACTCTTCACCTACAAGTGCATGCTCCAGAAGCTCGGCCACCACC GCGAGTTCAACCAGATGGAGAATCTTCTCTCAGAGATGAGGGCCACATTGGAGAACAATTTGTTGGAAGGAGCTTACGTG GAAGCAATGAGAAGCTATGGAAGGTTCGGGAAGGTTCAGGAAGCAGTGGACGTGTTCGAACGCATGGACTTGTATAACTG CGAGCCTTCTGTTCATTCGTACAATGCAATCATGAACATTCTGGTTGAGTTTGGTTACTTCAATCAAGCACACAAGGTTT ACATGAGGATGAAGGATAAAGGGGTGGGTTCTGATGTGTATACGTACACTATAAGGATCAAGTCTTTTTGTAGAACTGGT AGGCCTCATGCTGCACTGAGGCTGCTTCGTAACATGTCTGTGTTTGGTTGCAGTTTCAATGCTGTGGCCTATTGCACTGT GGTTGCTGGGTTTTATGAGTTTGGGGATAGAGACTTGGCACGTGAGCTGTTTGATGAAATGCTTGAGAGGTCTTTGTGTC CTGATGTTGCCACTTTTAATAAGCTGGTGCATGGGCTTTGCAAGAAGGGTTTTGTTCCTGAGAGTGAGAAGCTTCTCAAT AAGGTTTTGAAGAGAGGGGTTTCTCCTAATTTGTTTACTTATAATATCTTCATACAAGGGCTTTGCAGGGAGGGTGCTCT TGACAGGGCTGTTGTGTTTTTGGGTAGTGTCTCAAGGGAAGGCATGAGTCCTGATGTTGTAACTTATAATACTGTGATTT GTGGGCTGTGTAGGAAATCTCGGGTTGTAGAATCTGAGGAATGTTTGCATAAAATGGTTAACGATGGACTCCAGCCTGAT GAGTTCACATATAATACTATTATTGATGGGTACTGCAAGAAGGGGATGGTACAGGATGCGAATAGGATTTTGAAAGATGC TGTTTTTAAGGGTTTTAAGCCAGATGAGTTTACTTATTGTTCCTTGATTAATGGGTTGTGCGGAGATGGTGATCCTGATC AAGCCATGGCTGTCTTTAAGGATGGAGTAGAAAAAGGTTTGAAGCCGAGCATTGTTGTTTATAATACCTTGATTAAAGGG TTATCGCAACAGGGTCTTATTTTGCCAGCTTTGCAATTGATGAATGAGATGGCAGAAAATGGTGTTCAACCTAATATATG GACTTATAATACAGTTATAAATGGCTTGTGCAAGATGGGTTGTGTATCTGATGCTAGTCATCTTATCGATGAAGCTATTG CCAAAGGGTGCCTCCCAGACATATTTACCTATAACACTTTGATTGATGGCTACTGTAAACAGTTGAAGTTAGACAGTGCG ACTGAGATAGTAAACAGAATGTGGAGCCTAGGTGTGACTCCTGATGTTATCACATATAACACTTTGTTGAATGGGCTCTG CAAGGCTGCAAAATCTGAAGAAGTAATGGAGATTTTCAAGGCAATGGTGGAGAAGGGATGTGCTCCCAACATAATTACAT ACAACATTATCCTAGAAAGCCTTTGCAAAGCTAAGAAAGTAAATGAAGCTGTTGATTTGTTGGGGGAAATGAAAAGCAAG GGCTTGACACTTGATGTTGTAAGTTTTGGCACATTGATCACTGGGTTCTGTAAGATTGGGGATCTTGATGGTGCTTACCG GTTATTTAGAAGGATGGAAAGACAATATGATATTTGCCATACAACCGCAACATATAACATCATAGTTAGTGCATTTTCTG AACATCTCAATATGAACATGGCAGTAAGGCTCTTTTCCGAGATGAAGAAAAACGGTTGTGACCCGGACACCTATACTTAC CGGGTCATGATTGACGGCTTTTGCAAAACTGGAAACGTTACTCATGGATACAATTTTCTGTTGGAAAATATCGAAAAGGG GTTTTTTCCATCACTAACAACATTCGGTCGGGTTTTAAATTGCCTCTGCGTGAAGCACAAGGTTCGTGAAGCAGTCGGTA TCATCCACCTTATGGTACAAAAGGGCATCGTCCCAGAGATTGTAAATACAATTTTTGAAGCAGATAAAAAGGTGGTAGCA GCACCTAAGATTGTTGTAGAAAATTTGTTGAAGAAGGGCCATATAACTTATCATGCCTATGAACTACTATATGATGGTGT TAGAGATAAAAAGGTTCATAAGAAAAAACTCCCAAATATGAATTCTCTTCGTAGAGGGGCCAGGTCATCATCTGCTGATT AGATGACAATATAAGTTAGCTTCTTCCAGAATCAATTCATTTTGTAATCCAAACATGCCCTTAATGTCTTACTTTATCCC GACCCCAAGTTCAGGTATTTCTGCTTCTTCATAAATAGTTAACAGTTTGTTGTACTATTAATATTCACATTTCATAAAAG AACACTAGCTCTGGTTTCAGG
CDS sequence (LotjaGi4g1v0248500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGTGCATTGCTTCCAAAGCACGTTGCAGCTGTGGTGAAAGCCCAGAAGGATCCTCTGAAAGCGTTGGAGATTTT CAATTCAGCGAAGAACGAAGATGGCTTCAACCACACACTCTTCACCTACAAGTGCATGCTCCAGAAGCTCGGCCACCACC GCGAGTTCAACCAGATGGAGAATCTTCTCTCAGAGATGAGGGCCACATTGGAGAACAATTTGTTGGAAGGAGCTTACGTG GAAGCAATGAGAAGCTATGGAAGGTTCGGGAAGGTTCAGGAAGCAGTGGACGTGTTCGAACGCATGGACTTGTATAACTG CGAGCCTTCTGTTCATTCGTACAATGCAATCATGAACATTCTGGTTGAGTTTGGTTACTTCAATCAAGCACACAAGGTTT ACATGAGGATGAAGGATAAAGGGGTGGGTTCTGATGTGTATACGTACACTATAAGGATCAAGTCTTTTTGTAGAACTGGT AGGCCTCATGCTGCACTGAGGCTGCTTCGTAACATGTCTGTGTTTGGTTGCAGTTTCAATGCTGTGGCCTATTGCACTGT GGTTGCTGGGTTTTATGAGTTTGGGGATAGAGACTTGGCACGTGAGCTGTTTGATGAAATGCTTGAGAGGTCTTTGTGTC CTGATGTTGCCACTTTTAATAAGCTGGTGCATGGGCTTTGCAAGAAGGGTTTTGTTCCTGAGAGTGAGAAGCTTCTCAAT AAGGTTTTGAAGAGAGGGGTTTCTCCTAATTTGTTTACTTATAATATCTTCATACAAGGGCTTTGCAGGGAGGGTGCTCT TGACAGGGCTGTTGTGTTTTTGGGTAGTGTCTCAAGGGAAGGCATGAGTCCTGATGTTGTAACTTATAATACTGTGATTT GTGGGCTGTGTAGGAAATCTCGGGTTGTAGAATCTGAGGAATGTTTGCATAAAATGGTTAACGATGGACTCCAGCCTGAT GAGTTCACATATAATACTATTATTGATGGGTACTGCAAGAAGGGGATGGTACAGGATGCGAATAGGATTTTGAAAGATGC TGTTTTTAAGGGTTTTAAGCCAGATGAGTTTACTTATTGTTCCTTGATTAATGGGTTGTGCGGAGATGGTGATCCTGATC AAGCCATGGCTGTCTTTAAGGATGGAGTAGAAAAAGGTTTGAAGCCGAGCATTGTTGTTTATAATACCTTGATTAAAGGG TTATCGCAACAGGGTCTTATTTTGCCAGCTTTGCAATTGATGAATGAGATGGCAGAAAATGGTGTTCAACCTAATATATG GACTTATAATACAGTTATAAATGGCTTGTGCAAGATGGGTTGTGTATCTGATGCTAGTCATCTTATCGATGAAGCTATTG CCAAAGGGTGCCTCCCAGACATATTTACCTATAACACTTTGATTGATGGCTACTGTAAACAGTTGAAGTTAGACAGTGCG ACTGAGATAGTAAACAGAATGTGGAGCCTAGGTGTGACTCCTGATGTTATCACATATAACACTTTGTTGAATGGGCTCTG CAAGGCTGCAAAATCTGAAGAAGTAATGGAGATTTTCAAGGCAATGGTGGAGAAGGGATGTGCTCCCAACATAATTACAT ACAACATTATCCTAGAAAGCCTTTGCAAAGCTAAGAAAGTAAATGAAGCTGTTGATTTGTTGGGGGAAATGAAAAGCAAG GGCTTGACACTTGATGTTGTAAGTTTTGGCACATTGATCACTGGGTTCTGTAAGATTGGGGATCTTGATGGTGCTTACCG GTTATTTAGAAGGATGGAAAGACAATATGATATTTGCCATACAACCGCAACATATAACATCATAGTTAGTGCATTTTCTG AACATCTCAATATGAACATGGCAGTAAGGCTCTTTTCCGAGATGAAGAAAAACGGTTGTGACCCGGACACCTATACTTAC CGGGTCATGATTGACGGCTTTTGCAAAACTGGAAACGTTACTCATGGATACAATTTTCTGTTGGAAAATATCGAAAAGGG GTTTTTTCCATCACTAACAACATTCGGTCGGGTTTTAAATTGCCTCTGCGTGAAGCACAAGGTTCGTGAAGCAGTCGGTA TCATCCACCTTATGGTACAAAAGGGCATCGTCCCAGAGATTGTAAATACAATTTTTGAAGCAGATAAAAAGGTGGTAGCA GCACCTAAGATTGTTGTAGAAAATTTGTTGAAGAAGGGCCATATAACTTATCATGCCTATGAACTACTATATGATGGTGT TAGAGATAAAAAGGTTCATAAGAAAAAACTCCCAAATATGAATTCTCTTCGTAGAGGGGCCAGGTCATCATCTGCTGATT AG
Protein sequence (LotjaGi4g1v0248500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRALLPKHVAAVVKAQKDPLKALEIFNSAKNEDGFNHTLFTYKCMLQKLGHHREFNQMENLLSEMRATLENNLLEGAYV EAMRSYGRFGKVQEAVDVFERMDLYNCEPSVHSYNAIMNILVEFGYFNQAHKVYMRMKDKGVGSDVYTYTIRIKSFCRTG RPHAALRLLRNMSVFGCSFNAVAYCTVVAGFYEFGDRDLARELFDEMLERSLCPDVATFNKLVHGLCKKGFVPESEKLLN KVLKRGVSPNLFTYNIFIQGLCREGALDRAVVFLGSVSREGMSPDVVTYNTVICGLCRKSRVVESEECLHKMVNDGLQPD EFTYNTIIDGYCKKGMVQDANRILKDAVFKGFKPDEFTYCSLINGLCGDGDPDQAMAVFKDGVEKGLKPSIVVYNTLIKG LSQQGLILPALQLMNEMAENGVQPNIWTYNTVINGLCKMGCVSDASHLIDEAIAKGCLPDIFTYNTLIDGYCKQLKLDSA TEIVNRMWSLGVTPDVITYNTLLNGLCKAAKSEEVMEIFKAMVEKGCAPNIITYNIILESLCKAKKVNEAVDLLGEMKSK GLTLDVVSFGTLITGFCKIGDLDGAYRLFRRMERQYDICHTTATYNIIVSAFSEHLNMNMAVRLFSEMKKNGCDPDTYTY RVMIDGFCKTGNVTHGYNFLLENIEKGFFPSLTTFGRVLNCLCVKHKVREAVGIIHLMVQKGIVPEIVNTIFEADKKVVA APKIVVENLLKKGHITYHAYELLYDGVRDKKVHKKKLPNMNSLRRGARSSSAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 137 | 136 | 2.3E-24 | ||
| PANTHER | 13 | 270 | 258 | 1.1E-180 | – | |
| SUPERFAMILY | 17 | 265 | 249 | 3.4E-5 | – | |
| ProSiteProfiles | 39 | 69 | 31 | 6.873 | ||
| ProSiteProfiles | 75 | 109 | 35 | 8.879 | ||
| TIGRFAM | 83 | 111 | 29 | 1.1E-4 | ||
| Pfam | 83 | 105 | 23 | 0.0076 | ||
| Pfam | 109 | 158 | 50 | 4.0E-14 | ||
| ProSiteProfiles | 110 | 144 | 35 | 9.909 | ||
| TIGRFAM | 112 | 143 | 32 | 3.6E-4 | ||
| Gene3D | 138 | 209 | 72 | 4.3E-16 | ||
| ProSiteProfiles | 145 | 179 | 35 | 10.687 | ||
| TIGRFAM | 147 | 180 | 34 | 1.1E-6 | ||
| ProSiteProfiles | 180 | 214 | 35 | 10.435 | ||
| Pfam | 182 | 211 | 30 | 0.039 | ||
| TIGRFAM | 182 | 216 | 35 | 5.3E-5 | ||
| Gene3D | 210 | 274 | 65 | 2.5E-16 | ||
| Pfam | 214 | 263 | 50 | 5.9E-14 | ||
| ProSiteProfiles | 215 | 249 | 35 | 11.893 | ||
| TIGRFAM | 218 | 250 | 33 | 6.7E-5 | ||
| ProSiteProfiles | 250 | 284 | 35 | 11.104 | ||
| TIGRFAM | 252 | 286 | 35 | 1.1E-4 | ||
| Gene3D | 275 | 348 | 74 | 1.5E-22 | ||
| PANTHER | 277 | 385 | 109 | 1.1E-180 | – | |
| Pfam | 281 | 313 | 33 | 5.4E-10 | ||
| ProSiteProfiles | 285 | 319 | 35 | 12.2 | ||
| TIGRFAM | 287 | 321 | 35 | 5.9E-9 | ||
| Pfam | 319 | 367 | 49 | 3.7E-17 | ||
| ProSiteProfiles | 320 | 354 | 35 | 12.967 | ||
| TIGRFAM | 322 | 356 | 35 | 8.0E-9 | ||
| Gene3D | 349 | 418 | 70 | 1.9E-18 | ||
| PANTHER | 351 | 487 | 137 | 1.1E-180 | – | |
| ProSiteProfiles | 355 | 389 | 35 | 12.2 | ||
| TIGRFAM | 357 | 390 | 34 | 7.5E-6 | ||
| Pfam | 389 | 438 | 50 | 4.4E-17 | ||
| ProSiteProfiles | 390 | 424 | 35 | 11.597 | ||
| TIGRFAM | 392 | 426 | 35 | 4.1E-6 | ||
| Gene3D | 419 | 487 | 69 | 1.5E-22 | ||
| ProSiteProfiles | 425 | 459 | 35 | 11.751 | ||
| TIGRFAM | 428 | 461 | 34 | 1.1E-8 | ||
| Pfam | 455 | 487 | 33 | 1.5E-12 | ||
| ProSiteProfiles | 460 | 494 | 35 | 12.606 | ||
| TIGRFAM | 462 | 496 | 35 | 6.3E-8 | ||
| PANTHER | 476 | 594 | 119 | 1.1E-180 | – | |
| Gene3D | 488 | 558 | 71 | 9.6E-25 | ||
| Pfam | 494 | 543 | 50 | 5.4E-18 | ||
| ProSiteProfiles | 495 | 529 | 35 | 13.976 | ||
| TIGRFAM | 497 | 531 | 35 | 3.6E-10 | ||
| ProSiteProfiles | 530 | 564 | 35 | 12.266 | ||
| TIGRFAM | 532 | 565 | 34 | 4.2E-9 | ||
| Pfam | 560 | 593 | 34 | 2.7E-11 | ||
| ProSiteProfiles | 565 | 595 | 31 | 10.939 | ||
| TIGRFAM | 567 | 595 | 29 | 8.6E-6 | ||
| Gene3D | 577 | 721 | 145 | 8.5E-29 | ||
| PANTHER | 601 | 710 | 110 | 1.1E-180 | – | |
| ProSiteProfiles | 601 | 635 | 35 | 11.466 | ||
| Pfam | 602 | 649 | 48 | 8.1E-18 | ||
| TIGRFAM | 604 | 637 | 34 | 2.0E-7 | ||
| ProSiteProfiles | 636 | 670 | 35 | 10.468 | ||
| TIGRFAM | 638 | 671 | 34 | 0.0025 | ||
| ProSiteProfiles | 671 | 705 | 35 | 9.405 | ||
| TIGRFAM | 674 | 705 | 32 | 0.001 | ||
| Pfam | 674 | 703 | 30 | 0.088 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0248500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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