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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0250000 |
| Transcript ID | LotjaGi4g1v0250000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HNH endonuclease; TAIR: AT3G47490.1 HNH endonuclease; Swiss-Prot: sp|Q96F46|I17RA_HUMAN Interleukin-17 receptor A; TrEMBL-Plants: tr|I3T7Q3|I3T7Q3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0250000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60305889..60308283) extracted from Lotus japonicus Gifu genome v1.2.
GGAATATAGAGTACAAAGTGAAATACTCCTTTATGCAAATTTTATTTGACATCGGATAAAGAAAACACCAATCCAAATGA GTGGCGCTGGTAACGCCGCCGGCCGGAGTAGCAGCAGCACAACCGAAAGGAGGCGAAGAAGAAGGCCAACCTCGCCGCTG AAAGACCGTTCAGCAACGACTTCATCCAAGCTATCTTCTTCACCCAAACGAAGCACCTCACCATCCGCCACTCTCCTCGA CGACGACCCAGTCGCTCTCTTCGACGACTATACCCACCCAAACCCTAACCCTCGAAGCTTCCCACACAGTGTCAAGCAGA AATGCTGGGAGAAAGCTGACAAGATCAAAGGACGAGACCCTGATCGATGGCGCAGGGACCCCCTCGGCAATACTATCTTT CGCAAGCTCGTAGGTTGCCCTGGTTGTCTCTGCCATGACTATGATCACATTGTTCCGTACTCCAAGGTTTGTGTTTTATC CCCATTTCAATACCTAAATAGTAGAATTCAATTTTTAACTGTTGCTTAATGTTACCACTTTTTAGTTCCATTTGTTTTGT CTCTCTGAATTGTTTTTCCTTGCATATATTGTTATCCCCACATTGATGTGAATATGTGATTCTCTGAACCCCATGTCCTA GTCATTTTTTAGGAAAAATTTCTAATTCCAGAAGGTTTGGGGAATTATCAATGTTCAAACAATTCATTTCTTAATTGCCC CTTCATCTAGAAGATTTTTGAATGTTACCAGGCATTTGAATGTTACCAAGAGAGCATCATGGCATCATTGAGTATTTGAG TTACCAACTCATGCTGGTTTTGATTTACTTTTTGCTTATTCTTCAGGGGGGACAAAGCACACTGGAAAACTGTCAAGTAT TACAGGTAAGGTTTCTTAGTTTCCCTCCATTTCTCTGTTTCCATTAGTAGAAGGAACTGTGTTGTAGGCAGCAAGGGGCT TTTGTAATGCATTTTGTTGTATAATGTGCTTTACTAGGTGCCTTTTCTTGATAATCATGTACATGTGATTCATTAAATCC AAACATATCTCTACTGAGACTTACCCTGATATACCAAATTGATACCAATAATTTGATGTATTCATTGTTGTTTGGATTAG TAAGTAGATAATCATACACACGTTTGTGAATTCATTCTCAGGCATCTTTACTCATAGTGAGAAAGGCTTGTTTTTTTGTT GTTGTAAGGTTCCAAAGTAGAGCTTTTTATTATAAAGAACCACTTTTTTAGCATTGTGTTATAGAATTTTCTTGTAAGAG ACTTGGATGTATTGTTTTACCAGAGCTAGCAGCAGGGTGAAACAGGCTTGTTGTTGGATTAATAGTGAGAACATTTATTC AGCTGGTTCTAAAAAAGTGATACATTTACTCAGTTGGATACAAGCATTTAGAATTTTAAAATTACTCAAAACGACAGAGA TATCGTTCTGTTTCTTCTAGTACACTATTTTGTATGACTTTCAGACTCTAATCTCTAGGGATGAGTCTCACAATAGTTGG CCAGTTGGCATTAATGTCATTTGGTGTTGAAATAATTCCTCTCTTTTTCTCTGTTTCCTTATATTATTTCTCTTGCACTG ATGGAAGTTCTATCCATGATTTTTCCAGGCAACAGTTAATCGAGCAAAGGGTAACCGAACAGAGATCTCAAGAGCTGACC TGATGCAGAAGAGTTCTTATTGCAGGGTTTCAGGTATGAATATAATGATTATATTATCTATTAGTAGTAATTGAAAATTT GTTGATGGGAATATTGGATGCATTACAGGTCGTGATATGGATCTTCTGGAATTGTCAGCTTATGGCAATGTACGGCATGG ACCAGATTCTGGGGGATGTAGAATTCAGTGAACATTTTAATCCATATCATTTTATTGGTAGTTAATTTCCCATATGGGGG TTGGATGATGGACCTTGTTGTAGCTATTCACACTCACAAATCTTCTAGGGCTCCATTTGTACACAGTTTAAATTGCAAAG AAAGCGATAACATTGGTTGACTATCAAATTGGATCCTCTCCTGCAAGTGTTTTCTCCAACACCATGCAGCAAAATCTCAC CCCTTAATATTTATATTTAAAGGCAATGATTGATTTAAAGTGAGAGAACAATTAATTGCTTTATTGTTAAACTTATGTTT TCACACTGCTGTGCAGCGGCCGGAGACGATCCAAATTTGGTTGACTGTGCTTACTCTCTCTTTCAGTCTTTCCCAAAAAC TCTACAGTTATCAAGGATCACTTTTTTTTTTTTTTGAACATAAGGATCACTTATCAAGGATCACTTATTTGAAAAGTGAG TTTTGTGTACTTTTTTTAGCGTACATTTTTTCATATCTTCCCGGGTCACACCATAGTATCATATCAACCCTACCT
CDS sequence (LotjaGi4g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGCGCTGGTAACGCCGCCGGCCGGAGTAGCAGCAGCACAACCGAAAGGAGGCGAAGAAGAAGGCCAACCTCGCC GCTGAAAGACCGTTCAGCAACGACTTCATCCAAGCTATCTTCTTCACCCAAACGAAGCACCTCACCATCCGCCACTCTCC TCGACGACGACCCAGTCGCTCTCTTCGACGACTATACCCACCCAAACCCTAACCCTCGAAGCTTCCCACACAGTGTCAAG CAGAAATGCTGGGAGAAAGCTGACAAGATCAAAGGACGAGACCCTGATCGATGGCGCAGGGACCCCCTCGGCAATACTAT CTTTCGCAAGCTCGTAGGTTGCCCTGGTTGTCTCTGCCATGACTATGATCACATTGTTCCGTACTCCAAGGGGGGACAAA GCACACTGGAAAACTGTCAAGTATTACAGGCAACAGTTAATCGAGCAAAGGGTAACCGAACAGAGATCTCAAGAGCTGAC CTGATGCAGAAGAGTTCTTATTGCAGGGTTTCAGGTCGTGATATGGATCTTCTGGAATTGTCAGCTTATGGCAATGTACG GCATGGACCAGATTCTGGGGGATGTAGAATTCAGTGA
Protein sequence (LotjaGi4g1v0250000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAGNAAGRSSSSTTERRRRRRPTSPLKDRSATTSSKLSSSPKRSTSPSATLLDDDPVALFDDYTHPNPNPRSFPHSVK QKCWEKADKIKGRDPDRWRRDPLGNTIFRKLVGCPGCLCHDYDHIVPYSKGGQSTLENCQVLQATVNRAKGNRTEISRAD LMQKSSYCRVSGRDMDLLELSAYGNVRHGPDSGGCRIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 80 | 80 | - | – | |
| PANTHER | 15 | 198 | 184 | 5.9E-95 | – | |
| PANTHER | 15 | 198 | 184 | 5.9E-95 | – | |
| MobiDBLite | 29 | 53 | 25 | - | – | |
| Gene3D | 78 | 177 | 100 | 1.4E-6 | – | |
| SMART | 102 | 148 | 47 | 0.004 | ||
| CDD | 107 | 151 | 45 | 6.90804E-6 | ||
| Pfam | 120 | 153 | 34 | 2.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Endonuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks. |
Expression pattern of LotjaGi4g1v0250000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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