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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0250700 |
| Transcript ID | LotjaGi4g1v0250700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520; TrEMBL-Plants: tr|K7MKX7|K7MKX7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0250700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60426026..60428249) extracted from Lotus japonicus Gifu genome v1.2.
GTTGATTATCGGGGTTGGATGTTGATTGAACGCTTTGTTCCTGCAAGCGGCAGAAGAAGCATTCAGCAGCATGTGTTCAC GCTATTGCAGAGCTGCAACAACATACAAAATCTCATTCAAATTCACAGCCAAGTAGTTCTCAACGGCCTCTCTCAGAAGA CAAACATCATCACCAAGCTTCTATCATTCTACATTGCCTCTGATCAACTCCAACATGCCCACAAACTTTTCTCCACAATC GACAACCCAAGCACCACCGTTTGGAACCACATCATCAGAGGCTATGCTCGCAGCCACACTCCTTGGAAATCGGTGGAATG CTACAGACAAATGGTGTCAACTGAGGCTGAGCCTAATGGGTTCACATATTCGTTCCTCTTGAGTGCCTGTGTGCGAGGTG GGTTGCTGAGAGAAGGGGAACAGGTGCATGGCATTGTTCTGGTAAAAGGGTATTGCTCCAATGTGTTTGTGGAGACGAAT TTGATCAATTTCTATGCGGGGCGTGGTGGGGTTGAGCAAGCACGCCATGTGTTTGATGGTATGGGTCAGAGAAGTGTTGT TAGCTGGAATTCTATTCTTGCTGGGTATGTTAGTTGTGGTGATTTTGATGGGGCAAGAAGGGTTTTTGACGAAATGCCAA TAAGGAATGTGGTGTCTTGGACGACCATGATTGCTGGGTGTGCTCAGAAAGGGAGGTGTAAACAGGCTTTGTCGTTGTTT GGTGAGATGAGGAGAGCTCGTGTGGAATTGGATCAGGCGGCGTTGGTGGCTGCTTTATCAGCTTGTGCTGAATTAGGGGA TCTAAAATTGGGAAGATGGATCCATTGGTATGTTCAGCAGAGGATTGTTGCAAGGAACCAGCAGCAACCCTCTGTGCGCT TGAACAACGCACTCATACACATGTATGCTAGTTGTGGAGTCATCGGTGACGCTTATCAAGTGTTTACCAAGATGCCTCAG AGAAGCACGGTGTCCTGGACCAGCATGATCATGGCTTTTGCTAAACAAGGGCTTGGGAAGGAAGCCCTTGGTCTGTTTAA GACTATGGTTAGTGATGGTGCGGGAGTTGATGGAGTGAGACCTGATGCAATAACCTTGATTGTAGTTCTCTGTGCTTGCT GCCATGCAGGATTTGTAGATGAAGGACGCCGGATTTTCGCTTCCATGAACCGTACTTGGGGAATCAGCCCGAGGATTGAA CACTACGGATGCATGGTTGACCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACATGGACTTATTGAAAACATGCCTTT GAAACCGAATGATGCACTATGGGGCGCCCTTCTTGGTGGTTGCCAAATACACAAGAATTCAGAGCTAGCATCGGTAGTGG AACCCAAGTTAGTAGCTGAGCTTGACACTGATGGAGCCGCAGGCTATCTTGTGCTCTTGTCAAATATTTATGCTTTTGCC AAAAGGTGGCAGGATGTTATTGCAGTGAGACAGAAAATGATTGAGATGGGTGTGAAAAAGCCTCCAGGACAAAGTTGGAT CCAAATTAATGGAGTTGTCCATGATTTCGTGGCGGGGGACATGACTCATAAGCATTCATATTTTATATATGAAATCCTTT CTGAAATCATCAAGCAATCCCATGTGGATAGCTATGAACCAGACATAACAGGGGCTTTTCTTGGATGTTAAGGGATAGGA AGTGTAGGAAGGACATAATTTTTTGCCTTGTGCAATCTGGTTTTGCAATTATCTTTGCCTTGATGGATAGCAAGTGCATG TTCTGGTTTGGTGGTGATGGCTAGTACTAGTTCCAGCTTCTAACGGTGACTCTATATCATAGCTCTGATTAGACAATCAT TTTGTGGAGAAATGTTTGTCTCATTTTGCCACAAGTGTTCCTTCTCATGCCATGTCTATGAAAATATAGAACTATTGGAT GCATGAAGACACACTGACATTTAATTAAGATAGTCCAAAAATGAACATATCATTATTCCTTCAAAGATTTTTTAATCTGT AGACCGAAACAGCTCTTGTAACTAGTTTATTCTTAAATAGATAAGCCATTCTTTATGCTGGTTTCTTTAATCAAAGTCCT TTCCTCTTGGGTAGGAATCATGCTGGTAGTGTTTGATTTGAGTTGACTGTAATCTCCAGTGAAGGAAATACAAAGGTGAA TGAATAGGATTTAGGATTAGGAACTCTTCTTTAGTTTCGGTTTGAATTCAGTTTTATAAATAAG
CDS sequence (LotjaGi4g1v0250700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATTGAACGCTTTGTTCCTGCAAGCGGCAGAAGAAGCATTCAGCAGCATGTGTTCACGCTATTGCAGAGCTGCAA CAACATACAAAATCTCATTCAAATTCACAGCCAAGTAGTTCTCAACGGCCTCTCTCAGAAGACAAACATCATCACCAAGC TTCTATCATTCTACATTGCCTCTGATCAACTCCAACATGCCCACAAACTTTTCTCCACAATCGACAACCCAAGCACCACC GTTTGGAACCACATCATCAGAGGCTATGCTCGCAGCCACACTCCTTGGAAATCGGTGGAATGCTACAGACAAATGGTGTC AACTGAGGCTGAGCCTAATGGGTTCACATATTCGTTCCTCTTGAGTGCCTGTGTGCGAGGTGGGTTGCTGAGAGAAGGGG AACAGGTGCATGGCATTGTTCTGGTAAAAGGGTATTGCTCCAATGTGTTTGTGGAGACGAATTTGATCAATTTCTATGCG GGGCGTGGTGGGGTTGAGCAAGCACGCCATGTGTTTGATGGTATGGGTCAGAGAAGTGTTGTTAGCTGGAATTCTATTCT TGCTGGGTATGTTAGTTGTGGTGATTTTGATGGGGCAAGAAGGGTTTTTGACGAAATGCCAATAAGGAATGTGGTGTCTT GGACGACCATGATTGCTGGGTGTGCTCAGAAAGGGAGGTGTAAACAGGCTTTGTCGTTGTTTGGTGAGATGAGGAGAGCT CGTGTGGAATTGGATCAGGCGGCGTTGGTGGCTGCTTTATCAGCTTGTGCTGAATTAGGGGATCTAAAATTGGGAAGATG GATCCATTGGTATGTTCAGCAGAGGATTGTTGCAAGGAACCAGCAGCAACCCTCTGTGCGCTTGAACAACGCACTCATAC ACATGTATGCTAGTTGTGGAGTCATCGGTGACGCTTATCAAGTGTTTACCAAGATGCCTCAGAGAAGCACGGTGTCCTGG ACCAGCATGATCATGGCTTTTGCTAAACAAGGGCTTGGGAAGGAAGCCCTTGGTCTGTTTAAGACTATGGTTAGTGATGG TGCGGGAGTTGATGGAGTGAGACCTGATGCAATAACCTTGATTGTAGTTCTCTGTGCTTGCTGCCATGCAGGATTTGTAG ATGAAGGACGCCGGATTTTCGCTTCCATGAACCGTACTTGGGGAATCAGCCCGAGGATTGAACACTACGGATGCATGGTT GACCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCACATGGACTTATTGAAAACATGCCTTTGAAACCGAATGATGCACT ATGGGGCGCCCTTCTTGGTGGTTGCCAAATACACAAGAATTCAGAGCTAGCATCGGTAGTGGAACCCAAGTTAGTAGCTG AGCTTGACACTGATGGAGCCGCAGGCTATCTTGTGCTCTTGTCAAATATTTATGCTTTTGCCAAAAGGTGGCAGGATGTT ATTGCAGTGAGACAGAAAATGATTGAGATGGGTGTGAAAAAGCCTCCAGGACAAAGTTGGATCCAAATTAATGGAGTTGT CCATGATTTCGTGGCGGGGGACATGACTCATAAGCATTCATATTTTATATATGAAATCCTTTCTGAAATCATCAAGCAAT CCCATGTGGATAGCTATGAACCAGACATAACAGGGGCTTTTCTTGGATGTTAA
Protein sequence (LotjaGi4g1v0250700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIERFVPASGRRSIQQHVFTLLQSCNNIQNLIQIHSQVVLNGLSQKTNIITKLLSFYIASDQLQHAHKLFSTIDNPSTT VWNHIIRGYARSHTPWKSVECYRQMVSTEAEPNGFTYSFLLSACVRGGLLREGEQVHGIVLVKGYCSNVFVETNLINFYA GRGGVEQARHVFDGMGQRSVVSWNSILAGYVSCGDFDGARRVFDEMPIRNVVSWTTMIAGCAQKGRCKQALSLFGEMRRA RVELDQAALVAALSACAELGDLKLGRWIHWYVQQRIVARNQQQPSVRLNNALIHMYASCGVIGDAYQVFTKMPQRSTVSW TSMIMAFAKQGLGKEALGLFKTMVSDGAGVDGVRPDAITLIVVLCACCHAGFVDEGRRIFASMNRTWGISPRIEHYGCMV DLLSRAGFLDEAHGLIENMPLKPNDALWGALLGGCQIHKNSELASVVEPKLVAELDTDGAAGYLVLLSNIYAFAKRWQDV IAVRQKMIEMGVKKPPGQSWIQINGVVHDFVAGDMTHKHSYFIYEILSEIIKQSHVDSYEPDITGAFLGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 26 | 26 | 5.0 | – | |
| Gene3D | 3 | 148 | 146 | 1.3E-16 | ||
| PANTHER | 20 | 135 | 116 | 1.7E-99 | – | |
| Pfam | 77 | 125 | 49 | 2.9E-7 | ||
| ProSiteProfiles | 78 | 112 | 35 | 8.846 | ||
| ProSiteProfiles | 113 | 147 | 35 | 8.221 | ||
| PANTHER | 133 | 208 | 76 | 1.7E-99 | – | |
| ProSiteProfiles | 148 | 178 | 31 | 6.412 | ||
| Gene3D | 149 | 266 | 118 | 2.7E-27 | ||
| ProSiteProfiles | 179 | 209 | 31 | 10.052 | ||
| TIGRFAM | 181 | 210 | 30 | 1.8E-6 | ||
| PANTHER | 190 | 267 | 78 | 1.7E-99 | – | |
| Pfam | 209 | 255 | 47 | 1.7E-8 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.422 | ||
| TIGRFAM | 212 | 245 | 34 | 3.6E-7 | ||
| PANTHER | 264 | 487 | 224 | 1.7E-99 | – | |
| Gene3D | 273 | 349 | 77 | 1.3E-12 | ||
| ProSiteProfiles | 285 | 315 | 31 | 7.476 | ||
| Pfam | 290 | 315 | 26 | 0.28 | ||
| ProSiteProfiles | 316 | 350 | 35 | 9.712 | ||
| Pfam | 318 | 347 | 30 | 1.4E-7 | ||
| TIGRFAM | 318 | 347 | 30 | 1.3E-4 | ||
| Gene3D | 350 | 509 | 160 | 2.0E-20 | ||
| ProSiteProfiles | 356 | 391 | 36 | 8.44 | ||
| Pfam | 362 | 384 | 23 | 0.46 | ||
| TIGRFAM | 362 | 391 | 30 | 0.0011 | ||
| ProSiteProfiles | 392 | 422 | 31 | 6.906 | ||
| Pfam | 395 | 419 | 25 | 0.044 | ||
| ProSiteProfiles | 459 | 494 | 36 | 5.722 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0250700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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