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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0259200 |
| Transcript ID | LotjaGi4g1v0259200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H/ACA ribonucleoprotein complex subunit 2-like protein; TAIR: AT5G08180.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|Q9LEY9|NHP2_ARATH H/ACA ribonucleoprotein complex subunit 2-like protein; TrEMBL-Plants: tr|I3T6V7|I3T6V7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0259200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61471969..61473450) extracted from Lotus japonicus Gifu genome v1.2.
CCTAGTTAGGGAGAGTGTGAAGTGCTGAAATCCCCAAATTTTCATTCATTCTCAGGAACTCAGAGAGAGATGGGGAGCGA CAGTGAAGGAGAAAAGTCGGTGCAGAAGGAGAAGGAGAGGAAGAAGCTGCTTGCGGTGGCTCCCATTGCTAAACCCCTTG CTGGGAAGAAGCTTTGCAAGCGAACACTCAAGCTTGTTCGTAGAGGTTTGTGTCTGCATATTTTTCAATGTGATTTCTGA GTTTGTGTTTGGTACTTGCTTTTTGTTGTTAATTCATTGATGATTCTCTGGTAGTTTTTTGGTCTCACATGAAGCTGCAT CTTTCTGTGTGTTATTTCAGCTGCTGAACACAAATGCTTGAAAAGGGGAGTTAAGGAGGTGGTTAAAAGTATAAGGAGAG GTCACAAAGGGTCAGTATTCTGTGAAAGTCATCTTCTTTTCAGAAAGAGCATGAGAATAGTTATTAGGAAATACACAGGG ATTTTAGTATCATTAGAATTCTCATGTGTTATTTTATGGTTTTTATGCAAAGGAAATCAATTCTGTGCATTTTTGTGGTG CAGGTTGTGTGTTATAGCTGGAAACATATCCCCGATTGATGTCATCACTCATGTTCCTGTCTTGTGTGAAGAATCTGACG TTCCATATGTGTATGTCACGTCTAAAGAAGTAAGCGACCAACTTTACTATGTATTTTGATGTTTATATGTCTCTTAGGTA TATTATTAAGCACCTATTCACCTAGCTTCTGTAATTTTATTGTATTAAGCACATTTTTCTTTGTGGGTTTAATTTGATGT TAGAAGTTAAGAAGATTTTTCTTTGAGGTTTTTCCTCATTCGTAGGAATTACTGAAGCATTAAAGAGTGAGATGATGTAG TCCACACCTTCCTGAGGAGCTTGATTGCTCTTCTTTACTTGTTCAGCCAAAATTTATATTAATTGTACTAGTGTATGTTT GGTTAAGGACTTCAAAGTTTGTTCCTGTAGTGCATGTAAATTGTAAATCTCACTTTCCTATGAGGAAAACTTGGAAGTAA CATTTTGTTACTTTTCCTTTGTGTTGAATGCAACTTTTATCCAAATGAAGCCTTATCATTTGTATTTAAGTTCTTCTGAC CTGTTCTTTTTACTTGATGGAATATTTACCCCATTTATAGTGAGTAAAATATTTGGAGAATTGAGAAACATGGATCTGTC TGAAATTTGCTACTTCCTTCTGAATAAATGATTTACTATTTCATGATAGTATGCTTGTTAAATAAACTCCAATTGTTAAG TATGTGAGTTCATGGACTTAATTATTTATGTCATTTCCAGGACCTTGCCAGTGCAGGAGCAACAAAGAGGCCTACTTGCT GTGTTTTGGTGCTGACCAAGCCTGCAAAGGGAGAAATGGAGAAAGGGGAACAAGAGAAACTAAAGTCAGATTATGATCAA GTTGTGTCAGATGTTACCGAGATTACAGCTTCACTTTTTTGA
CDS sequence (LotjaGi4g1v0259200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGCGACAGTGAAGGAGAAAAGTCGGTGCAGAAGGAGAAGGAGAGGAAGAAGCTGCTTGCGGTGGCTCCCATTGC TAAACCCCTTGCTGGGAAGAAGCTTTGCAAGCGAACACTCAAGCTTGTTCGTAGAGCTGCTGAACACAAATGCTTGAAAA GGGGAGTTAAGGAGGTGGTTAAAAGTATAAGGAGAGGTCACAAAGGGTTGTGTGTTATAGCTGGAAACATATCCCCGATT GATGTCATCACTCATGTTCCTGTCTTGTGTGAAGAATCTGACGTTCCATATGTGTATGTCACGTCTAAAGAAGACCTTGC CAGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCTGACCAAGCCTGCAAAGGGAGAAATGGAGAAAGGGG AACAAGAGAAACTAAAGTCAGATTATGATCAAGTTGTGTCAGATGTTACCGAGATTACAGCTTCACTTTTTTGA
Protein sequence (LotjaGi4g1v0259200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSDSEGEKSVQKEKERKKLLAVAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPI DVITHVPVLCEESDVPYVYVTSKEDLASAGATKRPTCCVLVLTKPAKGEMEKGEQEKLKSDYDQVVSDVTEITASLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 155 | 155 | 5.7E-82 | – | |
| PANTHER | 1 | 155 | 155 | 5.7E-82 | – | |
| Gene3D | 17 | 153 | 137 | 3.4E-49 | ||
| SUPERFAMILY | 18 | 127 | 110 | 1.52E-31 | ||
| PRINTS | 25 | 38 | 14 | 7.4E-9 | ||
| PRINTS | 38 | 53 | 16 | 7.4E-9 | ||
| Pfam | 40 | 124 | 85 | 8.8E-24 | ||
| PRINTS | 52 | 66 | 15 | 1.0E-12 | ||
| PRINTS | 55 | 65 | 11 | 7.4E-9 | ||
| PRINTS | 71 | 84 | 14 | 1.0E-12 | ||
| PRINTS | 87 | 97 | 11 | 1.0E-12 | ||
| PRINTS | 97 | 111 | 15 | 1.0E-12 | ||
| PRINTS | 99 | 111 | 13 | 7.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleolus | A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome. |
Expression pattern of LotjaGi4g1v0259200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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