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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0259500 |
| Transcript ID | LotjaGi4g1v0259500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr|A0A151T4G5|A0A151T4G5_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0259500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:61562497..61568478) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTTAGGCCTAGAAGGTTGGGCCAAAGATTGGATGGTACCATAGAGATATATGTAGCGTAATTCAAAAACTAGGGGGT AAAAATGCTAGCATAGGAAGCAAAGAGGGGCCAGCCTAGAGTGTCCCATTAAATTCTTGAACCTCACTCACCGGTGTAGT ACCATACTCTTGAGCAAGGGACACAACCTGCAAAACTAAATCGTTCTCATTGATTATGACTCCTTCGGGCAAAGCAGGAC GGATTGGGAGTGGAGGTGGTCCTAGAAAACCATTCACTGCCTCCCAAAACTGGCCTCTAGAATTCCTCTTTATGTTACTG TTATGATAAAAAGGTCGTTGGTGCCACCTCAAAGGGCCCAATGGATCCAGGTAATGACAAAGTGGAGCACAATTTGGTTA GACGGAGCAGCCGAATTAGAACAAGGCCCACACGCTTTAGGGATTGAGAAGGGAAATATATAAATTGGGGGAAAAGAGTA TCTAGGGTGTAGAGTATTTTGTGGTGTCTCTTCTCTCTGCCGTATCTAGTTATTTCTTCTCCTCTTAGGATTTTGTCTTC TTCTTGGTTACTTTGCTGCATAATAAACATATATGTACTCTCATGACAGATTTATGAGACAATAATAATACTTGTTCCTT GTTGTTTTATCTGCTGCAATCTCCTATCTGTTTTCCACACTGTAGGGTCACTTCATTGGTGCTTTCATTGACCTCTGATG GCGGAGAATACTCGTTTGAAGGAGATGGCCGCTGAGATTAAGCGGGTATCAGATACACTCGTTGTTCATGATCAACAGGG CATCGCAACCCAGCAACATCTGGACTGTATAGAAACAACTTTGGCTTCTGTTCAGCGTGCTCTAGATTCCATAACCCTTG CTGTGGCCAACCTTTCTTCTTCGCCGATTGGAGCATCACACTCACCTCCTCAGATGCTTTCGGTGCGTTTGGACTTTCCA AAATTTGATGGCACGGACCCTCTGAATTGGATCTTCCGAGCTGAAAAAATTTTCTCCTATTACGTGACTCCTGATTCACA AAGGCTCACCATTGGCGTTGTTCATTTTGAAGGGTCGGTAGTTCCCTGGTTCCAAATGTTGGTCAAGAACAATCAAGTGG CAACATGGGCAGATTTAGCTCGGGCAGTAGAGGAACAATTTGGGCCTTCACAGTTTGATTCTCCCCGGGCACGATTGTTG AAGCTCACCCAAGTTGGCTCTGTAGCGGATTATTATGCCCAATTCATGACTCTCGCCAACAGGGTAGATGGTTTATCCGA TGCTGTGTTATTGGATTGCTTTGTAGGCAGACTTCGGGATTCCGTTCGTCGTGATGTTATTTCCCAGAGTCCCCAATCAC TTTTACGCGCGACATCTCTTGCTCGTCTCTTTGATGAGAAGGTTAGTCAGGGTTTCTCCTCGCCTACTGCTCGCACAAAC TCTGCTTCAGCATCACCGAAACCAGTCTCCTCCACCACTACAGCTAGTTCGCTCTCTTCCTCGTTGCCACCACTACTTCC AAAGCCGGTGCCTAAACTCCAACCTCAGGCCAAGCGTATTTCGCCTGCTGAGATGCAACTACGCAGGGAAAAGGGGCTTT GCTTTACATGTGATGAGAAGTACTCATGGAATCACAAATGCCCAAACAAACAACTCATGTTGTTCTTGACGGATCCGGAC GAATCCAATCCAGATTCTTCTAATGATATTGCTTCTCAGCTACAACCAGATTCTGACGATCCTGAATCGCCTTCGCACCA CCATCTCTCTCTGAATGCTTACAATGGTTCGCAAGGTTGTGCCACTATTCGATTTCAGGGCTCCATTGCGGGAAAATCAG TGCAGGTTCTCCTTGATGGGGGAAGCTCTGATAGCTTTATTCAACCTCGATTGGGTCATTACCTTCAACTCCATATTGAA CCAGCTCCGAATATGAAAGTTATGGTGGGAAACGGTCATTATCTTCATGCGGAGGGTGTTATCCGACAACTGCCCCTCCA CATTAATGGCCACTTAATATGTTTTCCAGCTTTTGTGTTACCTGTTTCAGGTTCTGAAGTAGTAATGGGAGCATCATGGC TGGCTACACTGGGAGCCCACATTGCAGATTACAGTTCGGCCACCATCAAGTTCTATTTAGACAATGAATTTGTCACTTTG CAAGGCGACAAATCTTACCTTCCTACTGTGGCTCAATTTCGTCATCTTAAACGTTTTTGTGCCACTAACTATATTGCTGC CATGTATACATATTGTCCTATTTTGCCTTGGATATATCTCTAGAGAGCGCCAAAGAATTGCCTACGGAATTACCAGATGA CTTGTATGTTGTGATACACAAATTTGCCTCTGTTTTTGCAGTTCCGCACGATTTACCTCCACTACGCACTCAGGACCACT CCATACCCCTTCAGGACGGTGTTTCAGCCATCAAAGTAAGGTCATATCGCTACCGTTTTTCTCAAAAAGCTGAGATTGAA CGCATGGTCGATGAAATGCTAGCTGAGGGTCTTATCCAACCGAGTACAAGTCCATTTTCAGCTCCGGTTCTCTTGGTCCG GAAGAAAGATGGTTCATGGCGTTTTTGTACTGATTATAGGGCTCTAAATGTTGTCACGGTTAAGGACTCTTTTCCTATGC CTACGGTGGATGAGTTACTAGATGAGCTTCGCGGCTCTCAGTTCTTCTCTAAATTGGATTTACGATCCGGGTATCACCAA ATACTAGTTAAGCCGGAGGACCGCCATAAAACTGTTTTTCGCACTCACCATGGGCACTATGAATGGCTTGTCATGCCTTT CGGCCTCACCAATGCCCCTGCTACATTTCAAGTTCTGATGAATGATGTGTTCAGACCTTTTCTGTGCAAGTTTGTTTTGG TTTTTTTCGACGATATTCTAGTTTATAGCTCGTCTTGGACTTTGCATTTGGAACACCTAGCTATTGTCCTTGAGTGCTTG CAACGACACCAGCTTTTTTCTAAGCTCTCCAAATGCTCTTTTGGCCAGACTAGGCTGGAATATTAGGGTCATATTGTCTC GAATCAGGGTGTTGAGATGGACCCATCCAAGGTTACAACTATTCAAGAGTGGTCTCTCCCTGTCGCCATCACTCATTTGC GAGCATTTCTTGGCTTAACTGGTTATTATCGTCGCTTTATTAAAAACTATGCTTCAATTGTTGGGCCTCTTACTGATCTA TTGCAAAAGGACAATTTTCACTGGTCACCGGCGGCGGAGTCAGCATTCATTGCTCTCAAACACGCCTTGCTTACTGCACC TGTCTTGGTACTCCCTGATTTTACTAAGCCTTTTATTGTTGAAACTGATGCATCCGGCCAAGGCATTGGCGCTGTTTTGT TGCAAGATGTCCATCCTATTGCCTACTTCTCTAAGAAGCTCTCCACTCGCATGCATAATCAATCAGCATATGTCCGTGAG CTTTATGCCATCACGGAGGCGGTGGCTAAATTTCGCCATTATCTGGTTGGACATTCCTTTGTCATTAGAACAGATCAGCG AAATTTGAAGCACCTTACTGATCAAGTCATTCAAACTCCGGAACAGGAGGCCTTGCTACCCAAGCTTTTGGGTTTCAATT TTTCTTTTGAATATAAACCAGGTCCTACTAATCAAGCAGCAGATGCACTGTCACGGTCCTTCCACATGGCCATTTCGTTT TCGCAGTCATCCATGCTCGCTGACATCAAGCGTGAAGTATCTTCCTCTACTTCAATGCAGCAATTGATTCTGCAATTCAA GTCTGATCCTGCCGCAATGCCCCACCACACATTAAGAGATGGCATGCTGTTTTTGCGCCAGCGATTGTTAATTCTTATGG AGGCTCGCAACCTTATTACAGGAATTTCACTCCTCATCTATTGGTGGTCATGCTGGTTATCATCGCACACATGCTCGCAT TGCTACTTATTTCTCTTGGTCGGGTATGCGTCAAGATATTCGTGACTTTATTCGGCTTTGTCAGGTTTGTCAGCGTGCCA AAACCTCACAAACCCATCCTGCTGGATTGTTGAGTCTGTTACCAATTCCCAACCAGGTATGGGAAGATGTTGCTATGGAT TTCATTGTTGGTCTTCCATTGTCTAAAGGTTTCTCGGTCATCTTCGTGGCCATTGACCGCTTGTCTAAATTTGCTCATTT TGCTCCTTTGAGGTCTACTGTCACAGCGCCTCAGGTTGCAGAAGTGTTTCTGAATATTGTTGTCAAGCTACATGGAATTC CTTCCTCTATAGTTTCTGACCGTGACAAGACGTTCACTAGTTCCTTTTGGCAGCACTTGTTCAAGCTCCAAGGCACGTCC TTACGAATGAGCTCTGCATATCACCCTCAGACAGATGGTCAATCTGAAGCCCTCAACAAGTGTTTAGAGATGTATTTACG TTGTTTTGTATCTGAGTATCCACACTTATGGGTTTCCTTTCTGCCTTGGGCTGAATTTTGGTACAACAGCTCCTTTCAAA CGTCCATTGGCATGACACCCTTCAAGGTTTTATATGGTCGTGATCCTCCAACAATCATTCCTAGCTCCGTCCGTGAAGAC ACCCCTTTTGATGTACACGTCCAGTTAGTGCAAAGGGATCGTCTTCTTTCTCAGCTAAAACTTAACTTAGCCCGTGCACA GACACGCATGAAGCTGAATGCTGACAAGAAGCGTACTGAGGTGGAATTCAAGGTGGGTGACTATGTTTTTGTGAAGTTGC AGCCATATCGCCAACACTCCTTGCGCCTTCAACGCAACCAGAAGTTATCTATGCGCTATTTTGGTCCCTTTAAGATTATT GAGCGCTTGGGTACAGTTGCATATAAATTAGAGCTCCCTTCAGAGGCCAAAATTCACCCGGTTTTCCATGTGTCCGTATT GAAATTGTGTCAAGGGGATCCAGCTGCCCAAGATATTCCCATCCCGCTCCTCGCAACTCCAACTGGTCCTCAGCTTGAGC CCCTGGCAGTTCTTGACACTCGCCAGATTCTCGTGCACGAAACTTGGGTTCCTCAATTGCTGATTCAATGGGAGGGTGCT GCTAACTGCACTTGGGAATTATTGTCCTATATCCAAGATAGCTTCCCTCAGTTTGCCCTTGCGGACAAGGTCACTTTTGA TGGGGAGGGTAATGTTATGATAAAAAAGGTCGTTGGTGCCACCTCAAAGGGCCACGTGACAATGGATCCAGGTAATGACA AAGTGGAGCACAATTTGGTTAGACGGAGCAGCCGAATTAGAACAAGGCCCACACGCTTTAGGGATTGAGAAGGGAAATAT ATAAATTGGGGGAAAAAGAGTATCTAGGGTGTAGAGTATTTTGTGGTGTCTCTTCTCTCTGCCGTCTCTAGTTATTTCTT CTCCTCTTAGGATTTTGTCTTCTTCTTGGTTACTTTGTTGCATAATAAACATATATGTACTCTCATGACAGATTTATGAG ACAATAATAATACTTGTTCCTTGTTGTTTTATCTGCTGCAATCTCCTATCTGTTTTCCACACTGCAGGGTCACTTCAGTT ATATCTGGTCTTCCTGCAAATCTTATGAAAATTTCTGATGAATTAGCTCTTGAGCCTTTGAGCCAGAATCTTCGAATTCT ACTTGTTGTGTACTCACTAACAAGGACAAATGAACCATCTCTGCTCACTGCCACCCCAGCTGGTATAGCAAGATCACTCA GCAAAACTGCTGTTTGGTTGGTGCTTGGATCATATTTGAGAAGGCTTCCAGTACTATCTCCACTACTTAGAATTGTATTC AAATCTCTGAAAAATCCAAGCACCACATTAAATATCACTTACAATTTACATGGAAAAAAATATTAGGAAGAGAAAAAAAC TCACTTGATCTGGAAATCAACATTGGTGACACCAAAATAAACGATTCCGATTTTAGGGTCTATATCCAAACTATCAGCAA AGAGAGAGGAATTGCCTTTTGCAGGTCCAACTGGGTTGGAGGACCTCCAATGGCAGTATGGC
CDS sequence (LotjaGi4g1v0259500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGAATACTCGTTTGAAGGAGATGGCCGCTGAGATTAAGCGGGTATCAGATACACTCGTTGTTCATGATCAACA GGGCATCGCAACCCAGCAACATCTGGACTGTATAGAAACAACTTTGGCTTCTGTTCAGCGTGCTCTAGATTCCATAACCC TTGCTGTGGCCAACCTTTCTTCTTCGCCGATTGGAGCATCACACTCACCTCCTCAGATGCTTTCGGTGCGTTTGGACTTT CCAAAATTTGATGGCACGGACCCTCTGAATTGGATCTTCCGAGCTGAAAAAATTTTCTCCTATTACGTGACTCCTGATTC ACAAAGGCTCACCATTGGCGTTGTTCATTTTGAAGGGTCGGTAGTTCCCTGGTTCCAAATGTTGGTCAAGAACAATCAAG TGGCAACATGGGCAGATTTAGCTCGGGCAGTAGAGGAACAATTTGGGCCTTCACAGTTTGATTCTCCCCGGGCACGATTG TTGAAGCTCACCCAAGTTGGCTCTGTAGCGGATTATTATGCCCAATTCATGACTCTCGCCAACAGGGTAGATGGTTTATC CGATGCTGTGTTATTGGATTGCTTTGTAGGCAGACTTCGGGATTCCGTTCGTCGTGATGTTATTTCCCAGAGTCCCCAAT CACTTTTACGCGCGACATCTCTTGCTCGTCTCTTTGATGAGAAGGTTAGTCAGGGTTTCTCCTCGCCTACTGCTCGCACA AACTCTGCTTCAGCATCACCGAAACCAGTCTCCTCCACCACTACAGCTAGTTCGCTCTCTTCCTCGTTGCCACCACTACT TCCAAAGCCGGTGCCTAAACTCCAACCTCAGGCCAAGCGTATTTCGCCTGCTGAGATGCAACTACGCAGGGAAAAGGGGC TTTGCTTTACATGTGATGAGAAGTACTCATGGAATCACAAATGCCCAAACAAACAACTCATGTTGTTCTTGACGGATCCG GACGAATCCAATCCAGATTCTTCTAATGATATTGCTTCTCAGCTACAACCAGATTCTGACGATCCTGAATCGCCTTCGCA CCACCATCTCTCTCTGAATGCTTACAATGGTTCGCAAGGTTGTGCCACTATTCGATTTCAGGGCTCCATTGCGGGAAAAT CAGTGCAGGTTCTCCTTGATGGGGGAAGCTCTGATAGCTTTATTCAACCTCGATTGGGTCATTACCTTCAACTCCATATT GAACCAGCTCCGAATATGAAAGTTATGGTGGGAAACGGTCATTATCTTCATGCGGAGGGTGTTATCCGACAACTGCCCCT CCACATTAATGGCCACTTAATATGTTTTCCAGCTTTTGTGTTACCTGTTTCAGGTTCTGAAGTAGTAATGGGAGCATCAT GGCTGGCTACACTGGGAGCCCACATTGCAGATTACAGTTCGGCCACCATCAAGTTCTATTTAGACAATGAATTTGTCACT TTGCAAGGCGACAAATCTTACCTTCCTACTGTGGCTCAATTTCGTCATCTTAAACGTTTTTGTGCCACTAACTATATTGC TGCCATGTATACATATTGTCCTATTTTGCCTTGGATATATCTCTAG
Protein sequence (LotjaGi4g1v0259500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAENTRLKEMAAEIKRVSDTLVVHDQQGIATQQHLDCIETTLASVQRALDSITLAVANLSSSPIGASHSPPQMLSVRLDF PKFDGTDPLNWIFRAEKIFSYYVTPDSQRLTIGVVHFEGSVVPWFQMLVKNNQVATWADLARAVEEQFGPSQFDSPRARL LKLTQVGSVADYYAQFMTLANRVDGLSDAVLLDCFVGRLRDSVRRDVISQSPQSLLRATSLARLFDEKVSQGFSSPTART NSASASPKPVSSTTTASSLSSSLPPLLPKPVPKLQPQAKRISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLMLFLTDP DESNPDSSNDIASQLQPDSDDPESPSHHHLSLNAYNGSQGCATIRFQGSIAGKSVQVLLDGGSSDSFIQPRLGHYLQLHI EPAPNMKVMVGNGHYLHAEGVIRQLPLHINGHLICFPAFVLPVSGSEVVMGASWLATLGAHIADYSSATIKFYLDNEFVT LQGDKSYLPTVAQFRHLKRFCATNYIAAMYTYCPILPWIYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 75 | 486 | 412 | 4.9E-67 | – | |
| PANTHER | 75 | 486 | 412 | 4.9E-67 | – | |
| Pfam | 114 | 197 | 84 | 1.8E-11 | ||
| MobiDBLite | 233 | 264 | 32 | - | – | |
| MobiDBLite | 233 | 285 | 53 | - | – | |
| MobiDBLite | 317 | 352 | 36 | - | – | |
| MobiDBLite | 321 | 340 | 20 | - | – | |
| Gene3D | 363 | 483 | 121 | 4.4E-12 | ||
| CDD | 366 | 456 | 91 | 3.5974E-14 | – | |
| SUPERFAMILY | 367 | 462 | 96 | 1.47E-7 | ||
| Pfam | 370 | 465 | 96 | 1.0E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0259500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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