Domain Predictions — View

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PF08284

Source: Pfam

Description

Retroviral aspartyl protease

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 64

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0032889.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cellular nucleic acid-binding protein [Medicago truncatula] gi\|357459751\|ref\|XP_003600156.1\|	Domains G3DSA:4.10.60.10 IPR001878 IPR005162 IPR013242 IPR021109 PF00098 PF03732 PF08284 PS50158 PTHR23002 SM00343 SSF50630 SSF57756 cd00303 mobidb-lite	15
LotjaGi1g1v0048500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0048500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi1g1v0048500_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0048500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi1g1v0089900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00850.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A061F1K1\|A0A061F1K1_THECC Retrotransposon-like protein; Found in the gene: LotjaGi1g1v0089900_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 IPR021109 IPR043502 PF08284 PTHR24559 PTHR24559:SF299 SSF50630 SSF56672 cd00303 mobidb-lite	11
LotjaGi1g1v0136100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A0A151RBM5\|A0A151RBM5_CAJCA Retrovirus-related Pol polyprotein from transposon 297 family; Found in the gene: LotjaGi1g1v0136100_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR021109 IPR043128 IPR043502 PF00078 PF08284 PS50878 PTHR24559 PTHR24559:SF288 SSF56672 cd00303 cd01647 mobidb-lite	16
LotjaGi1g1v0153800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151QNT0\|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0153800_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR012337 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17917 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SSF53098 SSF56672 cd00303 cd01647 cd09274	30
LotjaGi1g1v0196000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A0L9V4B0\|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0196000	Domains Coil G3DSA:2.40.70.10 IPR001969 IPR005162 IPR021109 PF03732 PF08284 PS00141 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 mobidb-lite	13
LotjaGi1g1v0203500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00850.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151QTL9\|A0A151QTL9_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi1g1v0203500_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 IPR000477 IPR021109 IPR043502 PF00078 PF08284 PTHR24559 PTHR24559:SF299 SSF56672 cd01647	11
LotjaGi1g1v0226700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|Q65XV7\|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr\|Q949L4\|Q949L4_CICAR Putative polyprotein; Found in the gene: LotjaGi1g1v0226700_LC	Domains G3DSA:2.40.70.10 G3DSA:4.10.60.10 IPR001878 IPR021109 IPR036875 PF00098 PF08284 PS50158 PTHR46148 PTHR46148:SF22 SM00343 SSF50630 SSF57756 cd00303 mobidb-lite	15
LotjaGi1g1v0229300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A1B5Z8G7\|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0229300_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR012337 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17917 PF17921 PS50878 PS50994 PTHR46148 PTHR46148:SF14 SSF53098 SSF56672 cd00303 cd01647 cd09274	30
LotjaGi1g1v0244200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp\|Q8AII1\|POL_SIVTN Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q949L4\|Q949L4_CICAR Putative polyprotein; Found in the gene: LotjaGi1g1v0244200_LC	Domains G3DSA:4.10.60.10 IPR001878 IPR036875 PF00098 PF08284 PS50158 PTHR23002 SM00343 SSF57756 mobidb-lite	10
LotjaGi1g1v0281700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A1B5Z8G7\|A0A1B5Z8G7_TRISU Uncharacterized protein; Found in the gene: LotjaGi1g1v0281700_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041373 IPR041588 IPR043128 IPR043502 NON_CYTOPLASMIC_DOMAIN PF00078 PF00098 PF03732 PF08284 PF17917 PF17921 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	45
LotjaGi1g1v0361200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A0L9V4B0\|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0361200_LC	Domains Coil G3DSA:2.40.70.10 IPR005162 IPR021109 PF03732 PF08284 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 cd18979 mobidb-lite	12
LotjaGi1g1v0388900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q2HW87\|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi1g1v0388900_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR021109 IPR043128 IPR043502 PF00078 PF08284 PS50878 PTHR24559 PTHR24559:SF299 SSF56672 cd00303 cd01647	16
LotjaGi1g1v0622800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0622800_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF03732 PF08284 PF17919 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi2g1v0013600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT4G36020.1 cold shock domain protein 1; Swiss-Prot: sp\|P53849\|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr\|Q2HW87\|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0013600_LC	Domains G3DSA:2.40.70.10 G3DSA:4.10.60.10 IPR001878 IPR005162 IPR021109 IPR036875 NON_CYTOPLASMIC_DOMAIN PF00098 PF03732 PF08284 PS50158 PTHR34482 PTHR34482:SF4 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00343 SSF57756 cd00303 mobidb-lite	21
LotjaGi2g1v0016800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A0A0L9V4Z2\|A0A0L9V4Z2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0016800_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.70.270 IPR000477 IPR005162 IPR021109 IPR041577 IPR043128 IPR043502 PF00078 PF03732 PF08284 PF17919 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647 cd09274 mobidb-lite	24
LotjaGi2g1v0016800_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A0A0L9V4Z2\|A0A0L9V4Z2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0016800_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.70.270 IPR000477 IPR005162 IPR021109 IPR041577 IPR043128 IPR043502 PF00078 PF03732 PF08284 PF17919 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647 cd09274 mobidb-lite	24
LotjaGi2g1v0020300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q8I7P9\|POL5_DROME Retrovirus-related Pol polyprotein from transposon opus; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi2g1v0020300_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR021109 IPR043128 IPR043502 PF00078 PF08284 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647	16
LotjaGi2g1v0090500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT3G43590.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|P05895\|POL_SIVVT Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q949L3\|Q949L3_CICAR Putative polyprotein; Found in the gene: LotjaGi2g1v0090500_LC	Domains G3DSA:2.40.70.10 G3DSA:4.10.60.10 IPR001878 IPR021109 IPR036875 PF00098 PF08284 PS50158 SM00343 SSF57756 cd00303 mobidb-lite	12
LotjaGi2g1v0106400_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q2HW87\|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi2g1v0106400_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001878 IPR005162 IPR021109 IPR036875 IPR043128 IPR043502 NON_CYTOPLASMIC_DOMAIN PF00078 PF00098 PF03732 PF08284 PS50158 PS50878 PTHR24559 PTHR24559:SF299 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SM00343 SSF50630 SSF56672 SSF57756 cd00303 cd01647 mobidb-lite	32
LotjaGi2g1v0110300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT4G36020.2 cold shock domain protein 1; Swiss-Prot: sp\|P05895\|POL_SIVVT Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q949L4\|Q949L4_CICAR Putative polyprotein; Found in the gene: LotjaGi2g1v0110300_LC	Domains G3DSA:2.40.70.10 G3DSA:4.10.60.10 IPR001878 IPR021109 IPR036875 PF00098 PF08284 PS50158 PTHR34482 PTHR34482:SF4 SM00343 SSF57756 cd00303	13
LotjaGi2g1v0113200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A0L9V4A1\|A0A0L9V4A1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0113200_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF03732 PF08284 PF17919 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi2g1v0116300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi2g1v0116300_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17917 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	43
LotjaGi3g1v0148900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q53RT3\|APRV1_HUMAN Retroviral-like aspartic protease 1; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0148900	Domains Coil G3DSA:2.40.70.10 IPR005162 IPR021109 PF03732 PF08284 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 mobidb-lite	11
LotjaGi3g1v0167800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0167800_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF03732 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	39
LotjaGi3g1v0266600_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT4G21890.1 zinc finger MYND domain protein; Swiss-Prot: sp\|P19158\|IRA2_YEAST Inhibitory regulator protein IRA2; TrEMBL-Plants: tr\|A0A151UEP7\|A0A151UEP7_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0266600_LC	Domains PF08284 mobidb-lite	3
LotjaGi3g1v0306700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0306700_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001878 IPR001969 IPR005162 IPR021109 IPR036875 IPR041373 IPR043128 IPR043502 PF00078 PF00098 PF03732 PF08284 PF17917 PS00141 PS50158 PS50878 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	32
LotjaGi3g1v0307200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	43
LotjaGi3g1v0307200_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	43
LotjaGi3g1v0307200_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi3g1v0307200_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd09274 mobidb-lite	43
LotjaGi3g1v0423100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0423100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi3g1v0423100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9V8\|B5U9V8_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0423100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi3g1v0472900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A0L9V4B0\|A0A0L9V4B0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0472900_LC	Domains G3DSA:2.40.70.10 IPR021109 PF08284 SSF50630 cd00303 mobidb-lite	6
LotjaGi4g1v0125300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi4g1v0125300_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR001969 IPR005162 IPR021109 IPR043128 IPR043502 PF00078 PF03732 PF08284 PS00141 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647 mobidb-lite	21
LotjaGi4g1v0159700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P0CT41\|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr\|A0A151RZR6\|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0159700_LC	Domains G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR012337 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17917 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SSF50630 SSF53098 SSF56672 cd00303 cd01647 cd09274	30
LotjaGi4g1v0171300_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q7LHG5\|YI31B_YEAST Transposon Ty3-I Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151QNT0\|A0A151QNT0_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0171300_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR012337 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17917 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SSF53098 SSF56672 cd00303 cd01647 cd09274	30
LotjaGi4g1v0182500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT4G15970.1 Nucleotide-diphospho-sugar transferase family protein; Swiss-Prot: sp\|Q9D232\|SPNS3_MOUSE Protein spinster homolog 3; TrEMBL-Plants: tr\|A0A151QL34\|A0A151QL34_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0182500_LC	Domains G3DSA:2.40.70.10 IPR021109 PF08284 PTHR46148 PTHR46148:SF22	5
LotjaGi4g1v0208200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT4G05200.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 25; Swiss-Prot: sp\|Q5A0L9\|SMP3_CANAL GPI mannosyltransferase 4; TrEMBL-Plants: tr\|Q3C0I0\|Q3C0I0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0208200_LC	Domains PF08284	2
LotjaGi4g1v0213500_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W0\|B5U9W0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0213500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.50.40 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SM00298 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979	40
LotjaGi4g1v0259500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A151T4G5\|A0A151T4G5_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi4g1v0259500	Domains G3DSA:2.40.70.10 IPR005162 IPR021109 PF03732 PF08284 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 mobidb-lite	10
LotjaGi4g1v0261200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: ATMG00850.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q3C0I2\|Q3C0I2_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0261200_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR021109 IPR043128 IPR043502 PF00078 PF08284 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647	16
LotjaGi4g1v0292400_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-I Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|P04323\|POL3_DROME Retrovirus-related Pol polyprotein from transposon 17.6; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi4g1v0292400_LC	Domains G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 IPR000477 IPR001969 IPR021109 IPR043128 IPR043502 PF00078 PF08284 PS00141 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647	18
LotjaGi4g1v0368100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi4g1v0368100_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.70.270 IPR000477 IPR001969 IPR005162 IPR021109 IPR041577 IPR043128 IPR043502 PF00078 PF03732 PF08284 PF17919 PS00141 PS50878 PTHR24559 PTHR24559:SF288 SSF50630 SSF56672 cd00303 cd01647 mobidb-lite	25
LotjaGi5g1v0114200_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|Q04832\|HEXP_LEIMA DNA-binding protein HEXBP; TrEMBL-Plants: tr\|A0A1B5Z7X4\|A0A1B5Z7X4_TRISU Uncharacterized protein; Found in the gene: LotjaGi5g1v0114200_LC	Domains CYTOPLASMIC_DOMAIN G3DSA:4.10.60.10 IPR001878 IPR036875 NON_CYTOPLASMIC_DOMAIN PF00098 PF08284 PS50158 PTHR34482 PTHR34482:SF4 SM00343 SSF57756 TMhelix TRANSMEMBRANE mobidb-lite	15
LotjaGi5g1v0150900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|B5U9W1\|B5U9W1_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0150900_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.50.40 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR000953 IPR001584 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF08284 PF17919 PF17921 PS50013 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SM00298 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	41
LotjaGi5g1v0166000_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151RZR6\|A0A151RZR6_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi5g1v0166000_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR012337 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF08284 PF17919 PF17921 PS50878 PS50994 PTHR46148 PTHR46148:SF14 SSF53098 SSF56672 cd01647 cd09274	27
LotjaGi5g1v0343500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P0CT41\|TF212_SCHPO Transposon Tf2-12 polyprotein; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi5g1v0343500_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00665 PF03732 PF08284 PF17919 PF17921 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	37
LotjaGi6g1v0027100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Gag-Pol polyprotein; TAIR: AT3G53500.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp\|P53849\|GIS2_YEAST Zinc finger protein GIS2; TrEMBL-Plants: tr\|Q2HW87\|Q2HW87_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein; Found in the gene: LotjaGi6g1v0027100_LC	Domains G3DSA:4.10.60.10 IPR001878 IPR005162 IPR036875 PF00098 PF03732 PF08284 PS50158 PTHR34482 PTHR34482:SF4 SM00343 SSF57756	12
LotjaGi6g1v0108800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|Q84ZV5\|Q84ZV5_SOYBN Polyprotein; Found in the gene: LotjaGi6g1v0108800_LC	Domains G3DSA:2.40.70.10 IPR021109 PF08284 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 mobidb-lite	8
LotjaGi6g1v0125000_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151RHT9\|A0A151RHT9_CAJCA Retrotransposable element Tf2; Found in the gene: LotjaGi6g1v0125000_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:4.10.60.10 IPR000477 IPR001878 IPR005162 IPR021109 IPR036875 IPR043502 PF00078 PF00098 PF03732 PF08284 PS50158 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF56672 SSF57756 cd00303 cd01647 mobidb-lite	24
LotjaGi6g1v0182500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G75560.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp\|P16900\|GAG_OMVVS Gag polyprotein; TrEMBL-Plants: tr\|A0A151RID1\|A0A151RID1_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0182500_LC	Domains Coil G3DSA:4.10.60.10 IPR001878 IPR001969 IPR005162 IPR036875 PF00098 PF03732 PF08284 PS00141 PS50158 PTHR34482 PTHR34482:SF4 SM00343 SSF57756 cd00303 mobidb-lite	17
LotjaGi6g1v0214100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A0A151TQZ3\|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001878 IPR001969 IPR005162 IPR021109 IPR036875 IPR043128 IPR043502 PF00078 PF00098 PF03732 PF08284 PS00141 PS50158 PS50878 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF56672 SSF57756 cd00303 cd01647 cd06503 mobidb-lite	30
LotjaGi6g1v0214100_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd06503 cd09274 mobidb-lite	44
LotjaGi6g1v0214100_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|P20825\|POL2_DROME Retrovirus-related Pol polyprotein from transposon 297; TrEMBL-Plants: tr\|A0A151TQZ3\|A0A151TQZ3_CAJCA Transposon Ty3-G Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001878 IPR001969 IPR005162 IPR021109 IPR036875 IPR043128 IPR043502 PF00078 PF00098 PF03732 PF08284 PS00141 PS50158 PS50878 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF56672 SSF57756 cd00303 cd01647 cd06503 mobidb-lite	30
LotjaGi6g1v0214100_LC.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd06503 cd09274 mobidb-lite	44
LotjaGi6g1v0214100_LC.6 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd06503 cd09274 mobidb-lite	44
LotjaGi6g1v0214100_LC.7 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd06503 cd09274 mobidb-lite	44
LotjaGi6g1v0214100_LC.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A151S2S3\|A0A151S2S3_CAJCA Transposon Ty3-I Gag-Pol polyprotein; Found in the gene: LotjaGi6g1v0214100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR001969 IPR005162 IPR012337 IPR021109 IPR036397 IPR036875 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17919 PF17921 PS00141 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF290 SM00343 SSF50630 SSF53098 SSF56672 SSF57756 cd00303 cd01647 cd06503 cd09274 mobidb-lite	44
LotjaGi6g1v0218100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A061FHZ8\|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17917 PF17921 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18638 mobidb-lite	42
LotjaGi6g1v0218100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A061FHZ8\|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17917 PF17921 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18638 mobidb-lite	42
LotjaGi6g1v0218100_LC.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A061FHZ8\|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17917 PF17921 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18638 mobidb-lite	42
LotjaGi6g1v0218100_LC.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A0A061FHZ8\|A0A061FHZ8_THECC DNA/RNA polymerases superfamily protein; Found in the gene: LotjaGi6g1v0218100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 G3DSA:4.10.60.10 IPR000477 IPR001584 IPR001878 IPR005162 IPR012337 IPR016197 IPR021109 IPR036397 IPR041373 IPR041588 IPR043128 IPR043502 PF00078 PF00098 PF00665 PF03732 PF08284 PF17917 PF17921 PS50158 PS50878 PS50994 PTHR24559 PTHR24559:SF299 SM00343 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18638 mobidb-lite	42
LotjaGi6g1v0334500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|P18479\|POLG_ZYMVC Genome polyprotein; TrEMBL-Plants: tr\|Q3C0I0\|Q3C0I0_LOTJA Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0334500	Domains G3DSA:2.40.70.10 IPR005162 IPR021109 PF03732 PF08284 PTHR34482 PTHR34482:SF6 SSF50630 cd00303	9

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd00303	CDD	1	1.56