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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0263900 |
| Transcript ID | LotjaGi4g1v0263900.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane fragile-X-F-associated protein; TAIR: AT1G18470.1 Transmembrane Fragile-X-F-associated protein; Swiss-Prot: sp|Q8W5R5|KN7D_ARATH Kinesin-like protein KIN-7D, mitochondrial; TrEMBL-Plants: tr|A0A151SLB9|A0A151SLB9_CAJCA RING finger protein B; Found in the gene: LotjaGi4g1v0263900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62782030..62789634) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTGGCGAAGGGTGTTGAAGTCAGTGCAGGCACTCGCTGCACACACTTTTCTCTTCTGCTTCACTCTCTTGCTCCT TCTCAAGCTCGATCATCAACTCTCTTCCTCTTGGTGGTTAGTTTTTGAATTCATTGATTTGCTTTTCTCATTCTGCTTTC ATTGCATGCCCAATTTGGGTTTCATTTTTCAAATTTTAGGTTTTCATCATGCTTCTTATTGAAGGGTTGCAAATTCTCAT AATCAAATTTTTGTTGCTTTTTGTTTATTTAAGTGGTGGATTTAATGATTTATTGTTGGTTTTTTTTTTTTTCGTTTGGG GTGGGAGGGTTTGGTGATGAAGTTTCCTTAATGGGTTGTGTTTGTTTCCTTTTGTGTTGTGAGAAAGAATGAGGAGATTA AAGGTTGGTGGGGCATTTGGCCCCACATGGATGCCTTATCTAATTCTCAAGAGATGAATTGAATATCTTTCACTTGATTC TGCTGCCACTCTGGCTCTGATTGACCCGAAATTTGGCAAGTGAATTGATTTTAAGAAAACAATGTGTTTTGTTTCTGGAA ACATGTTCTGAGTGCAAATTGACAATGTGTGTGGTTGTTTCACGTGGCGGTTTGTAATGTAGTGTGAGGGATTTTCGCCA TTAAAAATGGTTGCCGTCCATCATAATAGTTGTGCCAACCGCTGATAAGACACTGTAGGATCTGTTTTGGTAATATTGTA ATTACCACCTAAAAGGTGCAATGTGGGGATTGTCAACTGTTTTAATTCAGCCTTGACTTATGTTTTCTGCTGTATGAAAT TGTTCAAACAAGGAGAAGTGTCTGCTTGGTTGAGCCGGTGGAATGTGGGAAGGTGGAAAATAGGGAATGGGGTGTAGATG ACTGTCAACTGAAGTTATGGCCTTGATTGAAAATAAGTGCACTTTATTTTTGTGAACTTATATCATAATACTTGGTAGAT CAAGATAATCAAAGAGTGTGCAAGCTTTTGCCTTCTTTTTTTGGTCAACTTGCAAGCTTTTTTTAACTGCATGCTGAAGA AGTACTGGAATTATTTAGTAACTAATTCAAAGTGGGGCCTACCTTTATGAAAAAACTTAAGAGGTTAGAGAGACTCCGAA AGCGGAGGATGTATAGTTGTGGTATTAGCTTGGTGCAAGTCCGTCAAAACACAGTCTTTCAGCAAATAAATATATATAAT GTAAAAGGTTTCCTGAAAAAAACTGGTGTTGTCTAAAAATTGTTGATATGAATATTCTAATATAGTAAACATGTGGGGGA ACATGTGTTGGATATTGGATTCTAAGAATATAGTGATTGTCAATTACTGACTTCTACTTTAATATTCAGGACAATATTTT CACCTCTTTGGATGTTCCATGCCGTTGTCGCTCGAGGAAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACAT GTATGTCAGTGCCATTCTTAACTAAAATTTGACAGTTTCTATTTTGAGTTTTTGTCTTTTTGTTGTGGATATTGGGCCAT TTGACTTAAGAACTATGAGTTTCTGTCCTGTTCTTTGGCTACCATGGATAAAACCTTATAGTAAGGTTGTTGACTTTATT TTCTCTTTTATAATTTACTATTATCAAGTGTATTTTTTTCCCTGTCAACGCTTATACACTATACTGATTTTTTATGTTGT GACAGTGGGCACCATGCCATACGGTCGTCGCAACCCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAG AGCTTATATGGTACATTTCCTACTCTATGCTACCGTGTTATCATAGTTAGGAGTTTCCAATTACTTCCATGCATTCAATA TGCATTTCAGCTGTCTGTGCATGGAGTACTTCTTAAGAAATATTGAGTTGGTATGATTTGTTTATCTAGCTACATTGATG TTACAAATTTCTACATTAGAATTGTGAGCATAGGCATATCCTTGTGTTGGTGAAGTGAAATACTTTTGTCAAAACTGAAG ATTTGAATTCTGTAATTGCATTTCTGCTAGATTTCCATGTAAACTAATGCATTTATTTATGCGCAGTTCGTGGCTTTGCA GCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGTAACTTCT TTAGGATAGCTCTCATAAACAGTTATTTCTTTTGAGTTGTACTCTTGTGGTAGGAAAATCAATGGATGCATGAGTAATCA CCTATATTCTCTACACCTGCCTGAATAGATACTCTAGCATGTTTCTTTGCTGTCTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCCTTCTGTAAAGAATATTAAAACTTAATTATTGATGTACATCGTTGGGTTTGTTATCATGTGCTTT TTTAAAGTATTGAATGTGAAGTCCTTCAACATGGTTCATTGGTGCGGGCTCATGTAGTTTGATTATTTCTGCGTCGTTTG TAAACAATCAATATTTGTTTTTTGTGCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGATAGCATGAGTGATGAAGC AATCTGGGAAACTCTTCCTGTAAGGTTCCTTTTAATGAATGTCCTACATGTCATCCATCTTTCATGGTCTTTGTTGAGTT CTCTAATATAACTAACTAATTAACACAGACAATTAAATTAAAGGAATAATGATTCATGGTGTTCAAGCCTTCATCACTTT TGTCATTGATAAATAATGATTTCATTTCATATGGGAAAGTGCGCTAGACACCAGATCTATCTGATTATACATGCCACAGT AATTCAGGAAACATTGTGTGTAAGCTGTGCATGGCCACGGTTTTTTGAATTATTATTATTAGATGAATGAAATTGAGATG AATTTAGTTTCGATTCCATTCTCAGATAACTCATATTAGTGCTCGTTTAATATTAGATGTTTTATTGAAATTTGGAGAAT TCGCGTCGACTTTTGAAAAATATTTTATTTGAAGTTAAGTGTTATAAATTGTTAGCGACTGTTGTACTCTTTGCATTTTG AAGTAGTTTAACTGAAGAGATTTGTTACGCTTAAGTTTACATTTTAGGGCTATCTGTGTTATGAAACAAAAATCCAGTGC AGTACTCTCTTAAGATAGAAAGTGACATGCATCAAATAATTGTGAATGCTTTTTTTTGGAAAACATTGTGAGTATATTCT CTAACACTCGTAATGCAATCAATCTATTGTTATTATATGATAACAAATACTTTAGCTGCTAAATATCTCTAATACGTTAT TATATGATAACAAATACTTTAGCCGCTAAATATCTCTAATATCTGCTGCTTTATGCACGTACTTTGATCTTATACTTTCC TGAGCATCTTTGGAAATTGCCTCTTAGTTTGTGGATCAGGGTGGTTTCCAGTTTGCAAGTCTTGGACAATTTGAAATGTT ATGCAGGATCATTGCTTTTCTCTTCTCCTCTGTTATCTATTTTCATTAAATATTTTCTCTATATATGAATTTCGAATTAA TATTAACTTGATATTGGAGGGAAATTATTGCAACTGAAGCTGTGGTATTGACATATCAGATTATCTTGGTTGACTAGGAT TTTTCATATCATTTTTTTAATAATTCTCTATTGTTTGAAACAACAATGTTGCTCTCACTACCAAGATTTTGTATTGACAA AAGTGTCTGGCTGTCTTTAACTGATATTGCCATGCTTAGCTTTACCTGGATAAAATAAAAAATTCAAAGTGTATCTTATT TGAACCTTAGTGTCTTTCGTTTTTCATGTCCTCATATACCAATTACTCTTTGTTTGTAGCACTTTTGGATTGCAATCTCT ATGGTGTTCTTCATTGCTGCCACAATCTTCACCCTCTTAAAACTGAGTGGTAACTCTTTTCTTCTATAGTTGGTAGATGA ATTTTTCATTTATTCTTTATAAATTCCATCAGTGTTAATTTTTAACTTGTGATAACAATTTTGTGATTCCTTATGAATAT TGTTTTACGCTGCTTCTGCAAAGGTCATTTTTTGTTATATCTTCAGTATTTTCCCTGGGAAATAGGACTGCTATGTATCA GAAAAAAGAATGAATAACTACCAAAATTGAGTTTTTTTACTATGCTTCATAAAAAAATGTGGTTTCCTTCGATATAAAGA GCAGCACCTGTTGATACTACAATGTCATGATGACTTCTTTTTATTAAAGAATAAAAAATGAAGAGTCCATTTTATGACGT TTGACCTTTTTGGAATCTGTAATAATATCTAGGTGATGAATAAGACATTTTGTTTACCCTTGTTCTTATATGATTAATCT GTATTTTTTGGCCTTTATTTCTTGTTAATACAGGTGACGTAGGTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGCG TAGGTTTCTCTTGTCCAAGCACTAGCATGTTTTTTGATAATTATCTTTGATTTTCTTAGAATGTTGGCTTGAAAGTTTTA CAAAAGATTTTTACAACATTATTTTGCAGTATTGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCCGGT CATTCATAGAAATTCCAGAGAAGCCAGTTCATCTTCTACTGCAATTAGATATCTTGACTGGAACAGTGGTTTAACACTTT CTTCAGAGGAAAATCGTGAGGGGAGAATTTGCAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGCA TTCCAGGTTCTTCTTTGCATGCATTTAGAGGTATGTGTTATTTGAATTGTATGTAGGGCCAGCCTTTGGGATATTGTATT GGAAGATCTGAGCTGTTTTGCATTTCAGGGAACACCTGCTCGTGCCGTGTATCTACCTCTTCCAGTTATTTTCTCTCCCC TTTTCCTACTTCAAGGTGTTGCTGTGGTGTTATCTGTATCCAAGTTTGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGA GCTGGTGGAGGAATATATTTTAGAGTTTCTTTGAGAGCTCAGGATTGTTTGGGATTCTTGCACCATGGTTCTAGGTAATG AATCCTCTTTGGTTGTTATTATTATTAGGGAAAGATTTAGGTTAAAACCCTGTTGTTTGGCCTGATTTCAATTAGTCATT CCGTTCCCCTGAGCTTTATCATGATATTACTTAATTTTGAGCTCTTTCGTCCAATTTGTAATTTCATTTAACATGTCAAT GGGCATATGTTGTGTCATAAAACTCCAGTCCATCAGGTTTTTCTCAAATCAAATAAATCATTGATTAACATATTCTATTC AAATCTATTTATTGATATTATGTAAAACCCTGTGAAAGTTCTTGGTAGATATAATGTTTTGTGGGCGCTGAACCAATAGA ACGGGACTATTTGTTTGGTAGTTTTGAATTTGGGTCTTTTTATGTACGATATATAAAACTAACTTGACTCTTATTGATTT AATTCACAAATTGAACAAATGTATTGGACATCTACCTGAGGATGTCGCCAAACCCAATGGGCTGGTAGTGATTGGATTTT TCCTGTGTTATTATTTTTTCCACTAATATGATTGTAGAAAATAAATCGAATGTATACTTGGGGTCAAATTTTTCAAAAAG ATGCTCTCCAAGCCTCAAGGGAGTTATCTGATTTTTTTTTGCCCTTATTATTTTTACTACTTTTATGATTGGAGATGACA CCACCGATGTCTATTGACGTCAGAGTTTTTAACAATGGAAGCTGTGATCTTGTTGAATTACCATCTGCATGTAGTTTGTT GCACTAAGTCTGACAATTCGTGGAATCAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACG ATTGTACCATGAGGGAGCATCGGGGTAAGCATTATTTCATTTATTGAACCTTAGTGTATACCATCATAGAATGTAAATAA TGTGTTGGCCCATACATATGTTCCATGCAAAGTCTCTAGGAGCAGTTGTTATTCTAATGAGATTTATTTTGAAGATAAAA GAGGAATTAGAAAATCTGTTAAGTATGCCCCCAAACAAAAGACTATAACAGGATTGCTGGTGACTGCAATAAAAATGTGA TCCATGGTATTACTTTGATAGAATGGAATTCTCTAGGTACTAGGCATGGTAACTTAGCGATTTTACGCCAATGATTGCAT CAGATAGTAGTATAGTACTTCCATCATCACAAGTCATAACATACATATTTAAGGTGTATGGATCTTATGGAAAGACCAAA TTGAGATTAATTGAAACATTCAAGTTCACAAATGATACAATTAACATTAGGGAGGGGAGAAAGACGTTTTTCTTTAAGGA TAAAAAATACAGGTTTCTCACTATTCCTGTGTTTGACACTAGAACTTTATTACTTGTGAGACATCCCTTTTGTCCCTTCT TATGATACTTGTGAGATACGTAAGCTGTTTTCAATTTGTTAATATTTATTCACCACGTAGTTATTTCTAATGATCTTTGT AATTTTGACTTCCCTTGCACAGGTATAATACTTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGAT CTCGCTGAGGAGGTAATGACAGTTATATGATATAAATAAATAACTTAAGGTGGAGTATATTCATTTGGATATGGCCTTGA CTCTTGAGTAGCATGGTTGAAATTATTTACATAGGTTGTAGTTCGTTATGCTCATACGTTCAATATTAGGCACACAAATT GTCAGTTAGTCAATAACTCTGATTTTCTTTCTTAAGCATGGCTAAAATTTTCTAATTTCAGGTGTGGAGACTCCAGGCAG CTCTTGGTGAGCAGACGGAAATTATAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGTAAAAGCTTCTAACTTC TATCAGTATTTTAGTCATATGCTAGTACTATGCATTTTCCAAAGCCATCACAATGGCAAGGGTCATCATGCTATACCATT CAAGACATGGTAAATGGCATCATTCATTTAGAATATTCTTTAATTTTAAATCTTGGGGAGTAAATCTCAGTGATCAGTTA CCTCCACGATATTACCGGGGAAGGGAAGTCTTGTTTTATACATCACGCATAGGATTTTTGTGTTGTTAATCAAAGTCTGT TTGTTTAATGATTATAGTGGAAATATGAATAGATTGACGATCATAAAACGATTAAGTTAAATGTGCTGTCATTGCTGTAT CATAAAAACATGCAGTAATGTGAGTTACACTTAATCTGATAACTGAGCTATTTCGTGGAATTATGACAAAAATCAATAAT ATAGGTTTCAACCCTTTCATCCAGTGAAGCTTCTGAATGTTGTTGCCAACTTATATGTTCATATTTTGTATTTCTCAGGA GAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGTGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGGT AAGATCAAATAAATTATGGTCAATGACACATTTCATTTCATTTAATTTCATAGTTTGTCCTTATGGTTGATTTGCATGAT CTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGTCCAATTTGCCGTGACTCTATAGCAGAGCGCTTGCCCGTATATGATG TCTAG
CDS sequence (LotjaGi4g1v0263900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTGGCGAAGGGTGTTGAAGTCAGTGCAGGCACTCGCTGCACACACTTTTCTCTTCTGCTTCACTCTCTTGCTCCT TCTCAAGCTCGATCATCAACTCTCTTCCTCTTGGTGGACAATATTTTCACCTCTTTGGATGTTCCATGCCGTTGTCGCTC GAGGAAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACATTGGGCACCATGCCATACGGTCGTCGCAACCCCA TTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCGTGGCTTTGCAGCAGTCAATCTGAA GATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAG GGGATGAAGATAGCATGAGTGATGAAGCAATCTGGGAAACTCTTCCTCACTTTTGGATTGCAATCTCTATGGTGTTCTTC ATTGCTGCCACAATCTTCACCCTCTTAAAACTGAGTGGTGACGTAGGTGCTCTAGGCTGGTGGGACTTATTTATTAACTT TGCTATTGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCCGGTCATTCATAGAAATTCCAGAGAAGCCA GTTCATCTTCTACTGCAATTAGATATCTTGACTGGAACAGTGGTTTAACACTTTCTTCAGAGGAAAATCGTGAGGGGAGA ATTTGCAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGCATTCCAGGTTCTTCTTTGCATGCATTT AGAGGGAACACCTGCTCGTGCCGTGTATCTACCTCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTTCAAGGTGTTGCTG TGGTGTTATCTGTATCCAAGTTTGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGA GTTTCTTTGAGAGCTCAGGATTGTTTGGGATTCTTGCACCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGG GAGTCGGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCGGGGTATAATACTTTCTGTGGTTATCCTCCTGAGATTG TTAAGAAAATGCCTAAAAAGGATCTCGCTGAGGAGGTGTGGAGACTCCAGGCAGCTCTTGGTGAGCAGACGGAAATTATA AAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGTGT TGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGTCCAATTTGCCGTGACT CTATAGCAGAGCGCTTGCCCGTATATGATGTCTAG
Protein sequence (LotjaGi4g1v0263900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWRRVLKSVQALAAHTFLFCFTLLLLLKLDHQLSSSWWTIFSPLWMFHAVVARGRFSLPAPSAPRNRHWAPCHTVVATP LLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFF IAATIFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSTAIRYLDWNSGLTLSSEENREGR ICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVLSVSKFVEKLVLLLRSGAGGGIYFR VSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEII KYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 464 | 464 | 5.6E-270 | – | |
| PANTHER | 1 | 464 | 464 | 5.6E-270 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| Pfam | 28 | 289 | 262 | 1.0E-96 | ||
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 55 | 20 | - | – | |
| TMHMM | 36 | 53 | 18 | - | – | |
| Phobius | 56 | 75 | 20 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 76 | 98 | 23 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| Phobius | 123 | 142 | 20 | - | – | |
| Phobius | 143 | 166 | 24 | - | – | |
| TMHMM | 148 | 167 | 20 | - | – | |
| Phobius | 167 | 177 | 11 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 178 | 198 | 21 | - | – | |
| Phobius | 199 | 274 | 76 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 275 | 298 | 24 | - | – | |
| Phobius | 299 | 464 | 166 | - | – | |
| Gene3D | 392 | 463 | 72 | 1.5E-16 | ||
| SUPERFAMILY | 407 | 459 | 53 | 1.41E-7 | – | |
| Pfam | 414 | 456 | 43 | 3.8E-12 | – | |
| SMART | 417 | 451 | 35 | 0.0012 | ||
| ProSiteProfiles | 417 | 452 | 36 | 10.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0263900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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