Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0263900 |
| Transcript ID | LotjaGi4g1v0263900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane fragile-X-F-associated protein; TAIR: AT1G73950.1 Transmembrane Fragile-X-F-associated protein; Swiss-Prot: sp|Q8W5R5|KN7D_ARATH Kinesin-like protein KIN-7D, mitochondrial; TrEMBL-Plants: tr|A0A151SLB9|A0A151SLB9_CAJCA RING finger protein B; Found in the gene: LotjaGi4g1v0263900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62783401..62789634) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCCATGCCGTTGTCGCTCGAGGAAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACATGTATGTCAGTG CCATTCTTAACTAAAATTTGACAGTTTCTATTTTGAGTTTTTGTCTTTTTGTTGTGGATATTGGGCCATTTGACTTAAGA ACTATGAGTTTCTGTCCTGTTCTTTGGCTACCATGGATAAAACCTTATAGTAAGGTTGTTGACTTTATTTTCTCTTTTAT AATTTACTATTATCAAGTGTATTTTTTTCCCTGTCAACGCTTATACACTATACTGATTTTTTATGTTGTGACAGTGGGCA CCATGCCATACGGTCGTCGCAACCCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGG TACATTTCCTACTCTATGCTACCGTGTTATCATAGTTAGGAGTTTCCAATTACTTCCATGCATTCAATATGCATTTCAGC TGTCTGTGCATGGAGTACTTCTTAAGAAATATTGAGTTGGTATGATTTGTTTATCTAGCTACATTGATGTTACAAATTTC TACATTAGAATTGTGAGCATAGGCATATCCTTGTGTTGGTGAAGTGAAATACTTTTGTCAAAACTGAAGATTTGAATTCT GTAATTGCATTTCTGCTAGATTTCCATGTAAACTAATGCATTTATTTATGCGCAGTTCGTGGCTTTGCAGCAGTCAATCT GAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGTAACTTCTTTAGGATAGCT CTCATAAACAGTTATTTCTTTTGAGTTGTACTCTTGTGGTAGGAAAATCAATGGATGCATGAGTAATCACCTATATTCTC TACACCTGCCTGAATAGATACTCTAGCATGTTTCTTTGCTGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCCTTCTGTAAAGAATATTAAAACTTAATTATTGATGTACATCGTTGGGTTTGTTATCATGTGCTTTTTTAAAGTATT GAATGTGAAGTCCTTCAACATGGTTCATTGGTGCGGGCTCATGTAGTTTGATTATTTCTGCGTCGTTTGTAAACAATCAA TATTTGTTTTTTGTGCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGATAGCATGAGTGATGAAGCAATCTGGGAAA CTCTTCCTGTAAGGTTCCTTTTAATGAATGTCCTACATGTCATCCATCTTTCATGGTCTTTGTTGAGTTCTCTAATATAA CTAACTAATTAACACAGACAATTAAATTAAAGGAATAATGATTCATGGTGTTCAAGCCTTCATCACTTTTGTCATTGATA AATAATGATTTCATTTCATATGGGAAAGTGCGCTAGACACCAGATCTATCTGATTATACATGCCACAGTAATTCAGGAAA CATTGTGTGTAAGCTGTGCATGGCCACGGTTTTTTGAATTATTATTATTAGATGAATGAAATTGAGATGAATTTAGTTTC GATTCCATTCTCAGATAACTCATATTAGTGCTCGTTTAATATTAGATGTTTTATTGAAATTTGGAGAATTCGCGTCGACT TTTGAAAAATATTTTATTTGAAGTTAAGTGTTATAAATTGTTAGCGACTGTTGTACTCTTTGCATTTTGAAGTAGTTTAA CTGAAGAGATTTGTTACGCTTAAGTTTACATTTTAGGGCTATCTGTGTTATGAAACAAAAATCCAGTGCAGTACTCTCTT AAGATAGAAAGTGACATGCATCAAATAATTGTGAATGCTTTTTTTTGGAAAACATTGTGAGTATATTCTCTAACACTCGT AATGCAATCAATCTATTGTTATTATATGATAACAAATACTTTAGCTGCTAAATATCTCTAATACGTTATTATATGATAAC AAATACTTTAGCCGCTAAATATCTCTAATATCTGCTGCTTTATGCACGTACTTTGATCTTATACTTTCCTGAGCATCTTT GGAAATTGCCTCTTAGTTTGTGGATCAGGGTGGTTTCCAGTTTGCAAGTCTTGGACAATTTGAAATGTTATGCAGGATCA TTGCTTTTCTCTTCTCCTCTGTTATCTATTTTCATTAAATATTTTCTCTATATATGAATTTCGAATTAATATTAACTTGA TATTGGAGGGAAATTATTGCAACTGAAGCTGTGGTATTGACATATCAGATTATCTTGGTTGACTAGGATTTTTCATATCA TTTTTTTAATAATTCTCTATTGTTTGAAACAACAATGTTGCTCTCACTACCAAGATTTTGTATTGACAAAAGTGTCTGGC TGTCTTTAACTGATATTGCCATGCTTAGCTTTACCTGGATAAAATAAAAAATTCAAAGTGTATCTTATTTGAACCTTAGT GTCTTTCGTTTTTCATGTCCTCATATACCAATTACTCTTTGTTTGTAGCACTTTTGGATTGCAATCTCTATGGTGTTCTT CATTGCTGCCACAATCTTCACCCTCTTAAAACTGAGTGGTAACTCTTTTCTTCTATAGTTGGTAGATGAATTTTTCATTT ATTCTTTATAAATTCCATCAGTGTTAATTTTTAACTTGTGATAACAATTTTGTGATTCCTTATGAATATTGTTTTACGCT GCTTCTGCAAAGGTCATTTTTTGTTATATCTTCAGTATTTTCCCTGGGAAATAGGACTGCTATGTATCAGAAAAAAGAAT GAATAACTACCAAAATTGAGTTTTTTTACTATGCTTCATAAAAAAATGTGGTTTCCTTCGATATAAAGAGCAGCACCTGT TGATACTACAATGTCATGATGACTTCTTTTTATTAAAGAATAAAAAATGAAGAGTCCATTTTATGACGTTTGACCTTTTT GGAATCTGTAATAATATCTAGGTGATGAATAAGACATTTTGTTTACCCTTGTTCTTATATGATTAATCTGTATTTTTTGG CCTTTATTTCTTGTTAATACAGGTGACGTAGGTGCTCTAGGCTGGTGGGACTTATTTATTAACTTTGCGTAGGTTTCTCT TGTCCAAGCACTAGCATGTTTTTTGATAATTATCTTTGATTTTCTTAGAATGTTGGCTTGAAAGTTTTACAAAAGATTTT TACAACATTATTTTGCAGTATTGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCCGGTCATTCATAGAA ATTCCAGAGAAGCCAGTTCATCTTCTACTGCAATTAGATATCTTGACTGGAACAGTGGTTTAACACTTTCTTCAGAGGAA AATCGTGAGGGGAGAATTTGCAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGCATTCCAGGTTCT TCTTTGCATGCATTTAGAGGTATGTGTTATTTGAATTGTATGTAGGGCCAGCCTTTGGGATATTGTATTGGAAGATCTGA GCTGTTTTGCATTTCAGGGAACACCTGCTCGTGCCGTGTATCTACCTCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTT CAAGGTGTTGCTGTGGTGTTATCTGTATCCAAGTTTGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGG AATATATTTTAGAGTTTCTTTGAGAGCTCAGGATTGTTTGGGATTCTTGCACCATGGTTCTAGGTAATGAATCCTCTTTG GTTGTTATTATTATTAGGGAAAGATTTAGGTTAAAACCCTGTTGTTTGGCCTGATTTCAATTAGTCATTCCGTTCCCCTG AGCTTTATCATGATATTACTTAATTTTGAGCTCTTTCGTCCAATTTGTAATTTCATTTAACATGTCAATGGGCATATGTT GTGTCATAAAACTCCAGTCCATCAGGTTTTTCTCAAATCAAATAAATCATTGATTAACATATTCTATTCAAATCTATTTA TTGATATTATGTAAAACCCTGTGAAAGTTCTTGGTAGATATAATGTTTTGTGGGCGCTGAACCAATAGAACGGGACTATT TGTTTGGTAGTTTTGAATTTGGGTCTTTTTATGTACGATATATAAAACTAACTTGACTCTTATTGATTTAATTCACAAAT TGAACAAATGTATTGGACATCTACCTGAGGATGTCGCCAAACCCAATGGGCTGGTAGTGATTGGATTTTTCCTGTGTTAT TATTTTTTCCACTAATATGATTGTAGAAAATAAATCGAATGTATACTTGGGGTCAAATTTTTCAAAAAGATGCTCTCCAA GCCTCAAGGGAGTTATCTGATTTTTTTTTGCCCTTATTATTTTTACTACTTTTATGATTGGAGATGACACCACCGATGTC TATTGACGTCAGAGTTTTTAACAATGGAAGCTGTGATCTTGTTGAATTACCATCTGCATGTAGTTTGTTGCACTAAGTCT GACAATTCGTGGAATCAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACGATTGTACCATG AGGGAGCATCGGGGTAAGCATTATTTCATTTATTGAACCTTAGTGTATACCATCATAGAATGTAAATAATGTGTTGGCCC ATACATATGTTCCATGCAAAGTCTCTAGGAGCAGTTGTTATTCTAATGAGATTTATTTTGAAGATAAAAGAGGAATTAGA AAATCTGTTAAGTATGCCCCCAAACAAAAGACTATAACAGGATTGCTGGTGACTGCAATAAAAATGTGATCCATGGTATT ACTTTGATAGAATGGAATTCTCTAGGTACTAGGCATGGTAACTTAGCGATTTTACGCCAATGATTGCATCAGATAGTAGT ATAGTACTTCCATCATCACAAGTCATAACATACATATTTAAGGTGTATGGATCTTATGGAAAGACCAAATTGAGATTAAT TGAAACATTCAAGTTCACAAATGATACAATTAACATTAGGGAGGGGAGAAAGACGTTTTTCTTTAAGGATAAAAAATACA GGTTTCTCACTATTCCTGTGTTTGACACTAGAACTTTATTACTTGTGAGACATCCCTTTTGTCCCTTCTTATGATACTTG TGAGATACGTAAGCTGTTTTCAATTTGTTAATATTTATTCACCACGTAGTTATTTCTAATGATCTTTGTAATTTTGACTT CCCTTGCACAGGTATAATACTTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTCGCTGAGGA GGTAATGACAGTTATATGATATAAATAAATAACTTAAGGTGGAGTATATTCATTTGGATATGGCCTTGACTCTTGAGTAG CATGGTTGAAATTATTTACATAGGTTGTAGTTCGTTATGCTCATACGTTCAATATTAGGCACACAAATTGTCAGTTAGTC AATAACTCTGATTTTCTTTCTTAAGCATGGCTAAAATTTTCTAATTTCAGGTGTGGAGACTCCAGGCAGCTCTTGGTGAG CAGACGGAAATTATAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGTAAAAGCTTCTAACTTCTATCAGTATTT TAGTCATATGCTAGTACTATGCATTTTCCAAAGCCATCACAATGGCAAGGGTCATCATGCTATACCATTCAAGACATGGT AAATGGCATCATTCATTTAGAATATTCTTTAATTTTAAATCTTGGGGAGTAAATCTCAGTGATCAGTTACCTCCACGATA TTACCGGGGAAGGGAAGTCTTGTTTTATACATCACGCATAGGATTTTTGTGTTGTTAATCAAAGTCTGTTTGTTTAATGA TTATAGTGGAAATATGAATAGATTGACGATCATAAAACGATTAAGTTAAATGTGCTGTCATTGCTGTATCATAAAAACAT GCAGTAATGTGAGTTACACTTAATCTGATAACTGAGCTATTTCGTGGAATTATGACAAAAATCAATAATATAGGTTTCAA CCCTTTCATCCAGTGAAGCTTCTGAATGTTGTTGCCAACTTATATGTTCATATTTTGTATTTCTCAGGAGAAAGTGTTAT GCAGAATTTGTTTTGAGGGAGAGATTAGTGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGGTAAGATCAAATA AATTATGGTCAATGACACATTTCATTTCATTTAATTTCATAGTTTGTCCTTATGGTTGATTTGCATGATCTGCAGCACTT GCTCAGAGAAGTGTAAGAAGTGTCCAATTTGCCGTGACTCTATAGCAGAGCGCTTGCCCGTATATGATGTCTAG
CDS sequence (LotjaGi4g1v0263900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCATGCCGTTGTCGCTCGAGGAAGGTTTTCATTACCTGCACCATCAGCTCCACGTAATCGACATTGGGCACCATG CCATACGGTCGTCGCAACCCCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGTTCGTG GCTTTGCAGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGA ATGTGTAGGGCTCTAATGCCAGGGGATGAAGATAGCATGAGTGATGAAGCAATCTGGGAAACTCTTCCTCACTTTTGGAT TGCAATCTCTATGGTGTTCTTCATTGCTGCCACAATCTTCACCCTCTTAAAACTGAGTGGTGACGTAGGTGCTCTAGGCT GGTGGGACTTATTTATTAACTTTGCTATTGCCGAGTGCTTTGCTTTTCTTGTATGTACAAAGTGGTCCAATCCGGTCATT CATAGAAATTCCAGAGAAGCCAGTTCATCTTCTACTGCAATTAGATATCTTGACTGGAACAGTGGTTTAACACTTTCTTC AGAGGAAAATCGTGAGGGGAGAATTTGCAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGCATTCC AGGTTCTTCTTTGCATGCATTTAGAGGGAACACCTGCTCGTGCCGTGTATCTACCTCTTCCAGTTATTTTCTCTCCCCTT TTCCTACTTCAAGGTGTTGCTGTGGTGTTATCTGTATCCAAGTTTGTGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGC TGGTGGAGGAATATATTTTAGAGTTTCTTTGAGAGCTCAGGATTGTTTGGGATTCTTGCACCATGGTTCTAGATTATTAG GTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCGGGGTATAATACTTTC TGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAAGGATCTCGCTGAGGAGGTGTGGAGACTCCAGGCAGCTCT TGGTGAGCAGACGGAAATTATAAAATACAGCCAACAGGAGTATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTT GTTTTGAGGGAGAGATTAGTGTTGTATTGCTCCCATGTAGGCATCGTGTCCTTTGCAGCACTTGCTCAGAGAAGTGTAAG AAGTGTCCAATTTGCCGTGACTCTATAGCAGAGCGCTTGCCCGTATATGATGTCTAG
Protein sequence (LotjaGi4g1v0263900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFHAVVARGRFSLPAPSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIIILIDNFR MCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVI HRNSREASSSSTAIRYLDWNSGLTLSSEENREGRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPL FLLQGVAVVLSVSKFVEKLVLLLRSGAGGGIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTF CGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSTCSEKCK KCPICRDSIAERLPVYDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 418 | 418 | 9.2E-246 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 418 | 418 | 9.2E-246 | – | |
| Pfam | 1 | 243 | 243 | 6.9E-85 | ||
| Phobius | 23 | 46 | 24 | - | – | |
| TMHMM | 28 | 50 | 23 | - | – | |
| Phobius | 47 | 57 | 11 | - | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 58 | 76 | 19 | - | – | |
| Phobius | 77 | 104 | 28 | - | – | |
| TMHMM | 102 | 121 | 20 | - | – | |
| Phobius | 105 | 125 | 21 | - | – | |
| Phobius | 126 | 136 | 11 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 137 | 156 | 20 | - | – | |
| Phobius | 157 | 228 | 72 | - | – | |
| TMHMM | 228 | 250 | 23 | - | – | |
| Phobius | 229 | 252 | 24 | - | – | |
| Phobius | 253 | 418 | 166 | - | – | |
| Gene3D | 346 | 417 | 72 | 1.2E-16 | ||
| SUPERFAMILY | 361 | 413 | 53 | 1.19E-7 | – | |
| Pfam | 368 | 410 | 43 | 3.3E-12 | – | |
| ProSiteProfiles | 371 | 406 | 36 | 10.97 | ||
| SMART | 371 | 405 | 35 | 0.0012 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0263900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…