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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0266500 |
| Transcript ID | LotjaGi4g1v0266500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151TMA1|A0A151TMA1_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0266500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63138234..63140333) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCATCTTTCTCAATATGGTATCAGAGCTCTCTTGCATAACTCTGATTCATTCCGTTTCTTCACAGAAATTCCGTTTC TTCACAGGAATTCAACCACGATTCATCTTCGATCTTCGTTTCTCTCGATCGATCCATCTTCGGTCTTCGTTTCTCTCGAT CGATTCATCTTCAATTTGTTGGTTCTGCCTCAGATTTCGTCTTCGATTCAGCGGTCGATTCATCGTCGATCCCTCTTTCT TGCTTCAGATCTCGTTTCTGGTTCGATCTGCATGATTCTTTTTTCTTCTGCGATTGATCTTGTTTCTTCACCATGGCAGC ACCTTACCCTTATTCTCTTGAAGATGTGCAAGTCACTTCTTGCCCTCTGTATGTTCATCCTAATGAGAATCCGTCGATGA TTCTCGTTTCTCCACCATTGTCAGAGAACAATTATCATAGTTGGTCCAGATCGATGAAGATGAGCTTGTTGACCAAGAAC AAGCTTGGTTTTGTGGACGGTTCTCTTCCTGAACCAGCGGAAGATCATGCAATTTATCATTCCTGGCAATGCTGCAACAC TATGGTTCTTGGCTGGCTCATTCGCTCGATGAACGCTGAGATTGCTCAATCAATCTTGTGGCGTGAAAAGGCTATCGATG TTTGGAAGGAATTGAAGGAACGATTCTCCCAAGCAGATCTCTTCCGGATTTCGGAGCTCCAAGAAGAAATCTACAGTCTT AAGCAAGGAGATTTATCGGTAACAAAGTATTTTACTGCCATGAAAATTCTGATTGATGAATTAGATGTTCTGAAACCTTT ACCTTCTTGCACTTGTGATGCTTTGGTCAAGATCAAAGAGGATCGAAATTCCGATTATGTGATTCGTTTTCTTCGTGGCT TGAGTGAGCAATTCTCTGGAGTTAGGTCACAAATCATGCTTATGGATCCTCTACCAAGTATCAATCGTGTCTTTCAATTG GCGGCACAGCAAGAAAGGCAGTTTGCAGTAGAGCATGTTCCTAAGGCTCTCATGGCAAGTGCAAATGGAGCATCAGATTC TCAGAAGCATCACAATACTGGAGGAAAATGCAGCAACTACAGTTCTGGAAGTTCTTCTGGCAGCAGCAACAATCACTTTT CTCGTGGTGAGGCTAGTTCTCATTCCAGTGGCTATCGTAATCAACCTCGCAGGATCTGTTCCTATTGTGGACGATCAGGT CACACTGTGGATGTATGCTACAAGAAGCATGGATATCCACAAAATTTCAAGTCCAAGAATGGCAATGGAAAATCCCAGGG TCCACAGAAGCATGATAATATGACTATGGGTGCAGATTCTGGGCAGAACACTGAAGATGAAGACACTTGTTCTGATCATG GAGATCATTCCAGATTCAGTCTTACAGAAGCACAATACAACACCTTTCTATCTCTGTTACCTACACAGGATCAAGAGCCA CAACGCACTGCCAAGGTCAATTTCGCTCCCACAACCAAGACCGTTGTTGTTGCTCAGCACAACTCTGTCAAGGTTCCAGC TAAGAATGGTAAACTCAAACCTGTTCAATGGATTATAGATACTGGAGCTACCGATCATATTTGCTGTAGTTTAGCAGTTT TTGTTTCTTACAAAAGAATTAAACCTGTCCTTGTGAATTTGCCTAATGGCAATTCTCTTGTTGCACATTTTTCTGGTACC ATTGCATTTACAGACTCCTTTTATCTGGTTGATGCTCTTTATCTTCCAGCTTTTCATTTCAATTTGATATCAGTCACTAA ACTTGTGAACACCCTTGGCTGTAGGCTTACTTTTCTTCCAAAATTTTGCTTGATACAGGATACCAGTGCCTTGAAGATGA TTGGTGCGGCTAAGGAAGTGGATGGTCTCTACTACCTTGCAACCCCAACCCTGTCTACTCCTCACTTGACCTCCTCACCT AAGGTTTCAACTTGTTTCTCAGCGACAACCACTCCAAGCTTATGGCACTATCGTTTAGGACATCCTTCTTTTGATAGGCT TAGTCTTTTGGGTAAACAATTCCCTTTCATTCAATGTAATAAGGATCACATTTGTGATATTTGTCACCTTGCAAAGCAAA GGAAATTATCTTTTCCTGTT
CDS sequence (LotjaGi4g1v0266500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCACCTTACCCTTATTCTCTTGAAGATGTGCAAGTCACTTCTTGCCCTCTGTATGTTCATCCTAATGAGAATCC GTCGATGATTCTCGTTTCTCCACCATTGTCAGAGAACAATTATCATAGTTGGTCCAGATCGATGAAGATGAGCTTGTTGA CCAAGAACAAGCTTGGTTTTGTGGACGGTTCTCTTCCTGAACCAGCGGAAGATCATGCAATTTATCATTCCTGGCAATGC TGCAACACTATGGTTCTTGGCTGGCTCATTCGCTCGATGAACGCTGAGATTGCTCAATCAATCTTGTGGCGTGAAAAGGC TATCGATGTTTGGAAGGAATTGAAGGAACGATTCTCCCAAGCAGATCTCTTCCGGATTTCGGAGCTCCAAGAAGAAATCT ACAGTCTTAAGCAAGGAGATTTATCGGTAACAAAGTATTTTACTGCCATGAAAATTCTGATTGATGAATTAGATGTTCTG AAACCTTTACCTTCTTGCACTTGTGATGCTTTGGTCAAGATCAAAGAGGATCGAAATTCCGATTATGTGATTCGTTTTCT TCGTGGCTTGAGTGAGCAATTCTCTGGAGTTAGGTCACAAATCATGCTTATGGATCCTCTACCAAGTATCAATCGTGTCT TTCAATTGGCGGCACAGCAAGAAAGGCAGTTTGCAGTAGAGCATGTTCCTAAGGCTCTCATGGCAAGTGCAAATGGAGCA TCAGATTCTCAGAAGCATCACAATACTGGAGGAAAATGCAGCAACTACAGTTCTGGAAGTTCTTCTGGCAGCAGCAACAA TCACTTTTCTCGTGGTGAGGCTAGTTCTCATTCCAGTGGCTATCGTAATCAACCTCGCAGGATCTGTTCCTATTGTGGAC GATCAGGTCACACTGTGGATGTATGCTACAAGAAGCATGGATATCCACAAAATTTCAAGTCCAAGAATGGCAATGGAAAA TCCCAGGGTCCACAGAAGCATGATAATATGACTATGGGTGCAGATTCTGGGCAGAACACTGAAGATGAAGACACTTGTTC TGATCATGGAGATCATTCCAGATTCAGTCTTACAGAAGCACAATACAACACCTTTCTATCTCTGTTACCTACACAGGATC AAGAGCCACAACGCACTGCCAAGGTCAATTTCGCTCCCACAACCAAGACCGTTGTTGTTGCTCAGCACAACTCTGTCAAG GTTCCAGCTAAGAATGGATACCAGTGCCTTGAAGATGATTGGTGCGGCTAA
Protein sequence (LotjaGi4g1v0266500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPYPYSLEDVQVTSCPLYVHPNENPSMILVSPPLSENNYHSWSRSMKMSLLTKNKLGFVDGSLPEPAEDHAIYHSWQC CNTMVLGWLIRSMNAEIAQSILWREKAIDVWKELKERFSQADLFRISELQEEIYSLKQGDLSVTKYFTAMKILIDELDVL KPLPSCTCDALVKIKEDRNSDYVIRFLRGLSEQFSGVRSQIMLMDPLPSINRVFQLAAQQERQFAVEHVPKALMASANGA SDSQKHHNTGGKCSNYSSGSSSGSSNNHFSRGEASSHSSGYRNQPRRICSYCGRSGHTVDVCYKKHGYPQNFKSKNGNGK SQGPQKHDNMTMGADSGQNTEDEDTCSDHGDHSRFSLTEAQYNTFLSLLPTQDQEPQRTAKVNFAPTTKTVVVAQHNSVK VPAKNGYQCLEDDWCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 22 | 69 | 48 | 2.3E-19 | ||
| PANTHER | 52 | 329 | 278 | 1.8E-77 | – | |
| PANTHER | 52 | 329 | 278 | 1.8E-77 | – | |
| Pfam | 78 | 215 | 138 | 2.6E-9 | – | |
| MobiDBLite | 238 | 283 | 46 | - | – | |
| MobiDBLite | 310 | 353 | 44 | - | – | |
| MobiDBLite | 311 | 340 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0266500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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