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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0271800 |
| Transcript ID | LotjaGi4g1v0271800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|A0A1J7GHQ3|A0A1J7GHQ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63854997..63859290) extracted from Lotus japonicus Gifu genome v1.2.
ATTACATGTTGTATTTGAAACGTCATAGATTATTAGAATCTTATAATTAAAAAGCAAACACCAATTGTAATACACAATCC ATTGTATCTTGCTCAATATTCATGTAGCAAAGCAGTCGGTTTGGTTTCAACTTTCAAGTATACAGATTGGACCTCCTTGT AAGGTAATTCTATTCACCCCTCTCTCAATCCTTTAAAAATAGGAAATTCTTCTTTACAAATGTCATCATCTATTTGGAAA GCGGTGGTTGCGCATATTCTTCTAATAAGTGTTTTTTCCGAAATTCAAACTTGTATTTTCATCCGTATCATATCAAGTCT AAATTACTTATCAATGCTAGATGAATGGACAAACATAAATTTTAATTTATTCAAACTTGGTAGAGGGAGAGGGAGAGAGA GAGAATGAGAAGCGGTTTCCTTGTTCCTGGTTTTGGTGGAAAAGGTTGTAGTAGTGAAAATGCTGAGGTGGTTGGTTCGG TTGGACAACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTGTGTTGTGTGGGGAATACCCGGTTTTGAGGA AGGATTCATTGCACTTCTGAAATGTGCAGTGCCAGTACCTCTGTCTCTGGTTGACACCTATTTCTTCTTTCTTTCCCAAT ATAAAACCAAACCTCTTTCTTCCTTCTTCACAATTCACATTCATTCCCCCCAACACCTTCTCTCTTTTTTCCCCTTCTTC ATCCTGGGGTTTCTCCTCTAAATGCTCTTCACCCTTCTCCTTCTACTACAATCACTTCCTCTCAATCTCATCATCATCTT CTCTGTAATTCTTACACTTGTTTGTGATCTTAAGCTCTTTCAGCTTCTCTCACTCAGATTCTTTTTGGTTGTTGACTCAG CTTTCAATCTCATCATGCCTACCCTTATCAACTACAGTGGTAAGCTCCATGACTTCTCCTTCAATATTCATTTATTTGTC AATTTTTATGCCTATTGTTCAATTTCAGTTCCTGATTTCAACTGGGTTTGCTTCTATTGATTCAATTTCATGCCAAAACC TATAAAGTTTAGTTTTTTACTCTTGGAATAGATATTATCATAGATATGCTTAGAAACTGGGTTTGTAGAGCTTGTTGTTG CAATAAGAATCCTTAGATCATTAGGTTTGGATCTAGTATTAATAGTGATGTCTTTATAAGTTATGACCCTATAGTTTTTT TTCCCTTTTTCTACTGATTGGTGGAATGGACATGCATGATCAAGTCATATTTAGCTGAAAGTTTTAATCTTTTGTATGTG ATATGAGATTAGTATTGAATTTTGGTTCTGGGTTGTCCTGTTCTGTTAATTTGGAACAAGTTTTGAGCATGGCTGATTTT TTGTTGTGTGTGGATTTTTCAGGTGATGATGAACTGTATCAGGGGGGTTCTTTTTGCTCAAGTCCCATGGATTTGGGTCG CTTGTATACTATTAGCTCCAATGTAGATTCTTACTACCCTTCCACCAAGCGAGCTCGCGTGAGCGCCCCGTTTATCTTTG AAACTCTTCAAAAGCCTGGTATTGAGGTCCTTCCAGATGAGTGTCTATTCGAGATTTTCAGACGACTCCCTAGTAGCAAA GAGAGAAGCTCATGCGCCTGTGTATCTAAAAAATGGCTTATGCTTATGAGCAGCATCTGCAAAGCTGAAATTGAAGATGT TGAAATGAGATCCTCAGATGAGGATGAAGATATTGAAGGCGATGGCTACCTTACGAGGTCTTTGGAAGGGAAGAAAGCCA CTGATGTAAGGCTTGCTGCAATTGCAGTTGGGACTAGTGGCCGTGGAGGACTAGGGAAGCTATCTATCAGAGGGAGCAAC TCTGTTCGCGGTGTCACAAACCTTGGTCTCTCTGCAGTTGCTCATGGTTGCCCTTCTCTCAAGTCACTTTCTCTGTGGAA TGTGTCTTCCATTGGGGATGAGGGTCTGTCTCAGATAGCTAAAGGATGCCACATGTTGGAGAAGCTTGACCTGTGCCTGT CTTCCACAATCAGCAACAAGGGTTTGATTGCAATAGCTGAAGGCTGCCCCAACATGACTACCTTAAACATTGAATCATGC TCAAAGATTGGAAATGAGGGCTTGCAAGCTGTTGCAAGGTTTTGTCCCAAGTTACAATCAATCTCTATCAAGGATTGCCC CCTTGTTGGAGATCATGGAGTATCTAGTCTGTTATCATCAGCTTCTGAATTGTCAAGGGTGAAGCTTCAGTCCTTGAACA TTACAGATTTTTCTCTGGCTGTTATTGGCCACTATGGAAAGGCACTAACACATCTAGTCCTCAGTGGCCTCCAAAATGTC ACTGAGAGAGGGTTTTGGGTCATGGGTGTTGCTCAAGGTCTGCAGAAGCTTGTGTCCTTCACTGTTACTTCCTGCAGAGG GGTAACTGATGCAAGCATTGAAGCCATGGGCAAAGGTTGCACGAACCTGAAGCAGATGAGCCTTCGCAAGTGTTGCTTTG TATCCGACAGCGGACTGGTAGCATTTGCCAAGGCTGCAGGAACCCTTGAGAGCCTGCAATTAGAAGAGTGCAACAGGGTC ACCCAGTCTGGGATTATTGGTGCCATTTCAAACATCAAATCAAAGTTCAAATCTCTTACCATTGTGAAGTGCATGGGAGT TAAAGAAATTGATGCAGATGTGTCTATGCTTTCTCCTTGTGAAACTCTTAGATCTTTGGTCATTCAAAACTGCCCCGGAT TCGGTAGCTCTAGCCTGGCTATGATCGGAAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTGGACTCTATGGCATA ACAGATGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAGGCTGGACTTGTCAAGGTGAATCTTACCGGTTGCTGGAACTT GACTGATAATGTAGTATCAACCTTGGCCAGGCTACATGGTGGAACCCTCGAGTTGCTGAATCTTGATGGATGCTGGAGAA TCACAGATGCAAGCTTGGTTGCAATTGCAGACAACTGCCTGCTGCTTAATGATCTAGATGTGTCCAAGTGTGCAATCACC GACGCCGGTTTAGCTGTTCTTTCCGGTGCCGGTCAGCTTAGTTTGCAAGTGCTTTCCTTGTCTGGCTGTTGTGATCTATC AAACAAAAGTGTGGCTTTCCTGACAAAATTGGGCCAAACCTTGTTGGGATTGAATCTCCAACACTGCAGTTCAATTGGCA GCAGCACAATTGAGTTGCTGGTGGAGAACTTGTGGAGATGTGATATTCTGGCTTGATTAGGAAAGGACATAGAACTGAAC ATATTGAACTGGATCTGGAAATTCAGGATATGAAGTACATGTATTGAACTACAATAATGAACGCGACAGGTGATGACATT CAGCATACGTTTTTGGCTGATACGCCTCTTAAAGGTGGATTGGTGGTGGTTTGTTGACTTGGTTGTTTTCCAGGGAACTT TGGCTTGTTCCTTCAAGACCCTTTTTTGCAAGCATTTCATGCTTGTTACGACCCTTTTGGCCTTGCCTTAATGGAAGGCC ACATATTTTATGGCTAAAGTTCCCTGAGAATACAGTTACTGAGTCTTGGTTCATGGTTTCCACTGCTAGATGGTGCATTG CTTATGTTTGTATTGCTGGATGTTCTCTACTGAGGTGTTTTAGCTTCTATGTACGTTGTTATGATGTTAGCTTGTTTTCC TTTTGTTTTGTCAGTGTGGTTGTGTAGTTTAATTGTAAGACTAGGTAACCTCATGTTCAAGGACTTTGGTGGTGGCAGGG CATTCTTCTGGTCCTGCTACAACAACCCATATTTTGGGTTGCTTTTTTCTTTTAGATCGAGTCCTTGTTTTTGTAGGCTT CTCTTGCTTATAAATTGTACTTAGCAGACCACTGTGGTTTTCCTGTGATAAATAAAATTTCCATTTGCATCTATTTGTTG CTACTGTTTTTTATTCTGTTATGAATGATGGAATGGTGTGTACTGTATACAATGTACACATGAAGTGGATTTGGATGGCA GCAAGGGTGGGTGGTATAGTGTCTACCTTGTTAGGTGTGTAAAAGAAAAGAAGGGAACCATCTAGGAAAGGACTCGTTTC AAGATTCAACAATAGGAAAAAAAAAATATGTGAAATGAGTGATGTGATAGAAATAGAAGAAAAATATAATGAGTGATATG AGTGGAGATGAGTTGTATGAGAAGTTGAGTGTGATTATATCAAAGGTTGTTCTACATTATTGTAAACCTGCTGTGCTGCT CGTGAAGATATTTGTCTTTTTTTTTAGCAATTGAAGATATTTGTCTGGTATACT
CDS sequence (LotjaGi4g1v0271800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTTCACCCTTCTCCTTCTACTACAATCACTTCCTCTCAATCTCATCATCATCTTCTCTGTAATTCTTACACTTGT TTGTGATCTTAAGCTCTTTCAGCTTCTCTCACTCAGATTCTTTTTGGTTGTTGACTCAGCTTTCAATCTCATCATGCCTA CCCTTATCAACTACAGTGGTGATGATGAACTGTATCAGGGGGGTTCTTTTTGCTCAAGTCCCATGGATTTGGGTCGCTTG TATACTATTAGCTCCAATGTAGATTCTTACTACCCTTCCACCAAGCGAGCTCGCGTGAGCGCCCCGTTTATCTTTGAAAC TCTTCAAAAGCCTGGTATTGAGGTCCTTCCAGATGAGTGTCTATTCGAGATTTTCAGACGACTCCCTAGTAGCAAAGAGA GAAGCTCATGCGCCTGTGTATCTAAAAAATGGCTTATGCTTATGAGCAGCATCTGCAAAGCTGAAATTGAAGATGTTGAA ATGAGATCCTCAGATGAGGATGAAGATATTGAAGGCGATGGCTACCTTACGAGGTCTTTGGAAGGGAAGAAAGCCACTGA TGTAAGGCTTGCTGCAATTGCAGTTGGGACTAGTGGCCGTGGAGGACTAGGGAAGCTATCTATCAGAGGGAGCAACTCTG TTCGCGGTGTCACAAACCTTGGTCTCTCTGCAGTTGCTCATGGTTGCCCTTCTCTCAAGTCACTTTCTCTGTGGAATGTG TCTTCCATTGGGGATGAGGGTCTGTCTCAGATAGCTAAAGGATGCCACATGTTGGAGAAGCTTGACCTGTGCCTGTCTTC CACAATCAGCAACAAGGGTTTGATTGCAATAGCTGAAGGCTGCCCCAACATGACTACCTTAAACATTGAATCATGCTCAA AGATTGGAAATGAGGGCTTGCAAGCTGTTGCAAGGTTTTGTCCCAAGTTACAATCAATCTCTATCAAGGATTGCCCCCTT GTTGGAGATCATGGAGTATCTAGTCTGTTATCATCAGCTTCTGAATTGTCAAGGGTGAAGCTTCAGTCCTTGAACATTAC AGATTTTTCTCTGGCTGTTATTGGCCACTATGGAAAGGCACTAACACATCTAGTCCTCAGTGGCCTCCAAAATGTCACTG AGAGAGGGTTTTGGGTCATGGGTGTTGCTCAAGGTCTGCAGAAGCTTGTGTCCTTCACTGTTACTTCCTGCAGAGGGGTA ACTGATGCAAGCATTGAAGCCATGGGCAAAGGTTGCACGAACCTGAAGCAGATGAGCCTTCGCAAGTGTTGCTTTGTATC CGACAGCGGACTGGTAGCATTTGCCAAGGCTGCAGGAACCCTTGAGAGCCTGCAATTAGAAGAGTGCAACAGGGTCACCC AGTCTGGGATTATTGGTGCCATTTCAAACATCAAATCAAAGTTCAAATCTCTTACCATTGTGAAGTGCATGGGAGTTAAA GAAATTGATGCAGATGTGTCTATGCTTTCTCCTTGTGAAACTCTTAGATCTTTGGTCATTCAAAACTGCCCCGGATTCGG TAGCTCTAGCCTGGCTATGATCGGAAAATTGTGTCCCCAACTTCAGCATGTTGATCTGACTGGACTCTATGGCATAACAG ATGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAGGCTGGACTTGTCAAGGTGAATCTTACCGGTTGCTGGAACTTGACT GATAATGTAGTATCAACCTTGGCCAGGCTACATGGTGGAACCCTCGAGTTGCTGAATCTTGATGGATGCTGGAGAATCAC AGATGCAAGCTTGGTTGCAATTGCAGACAACTGCCTGCTGCTTAATGATCTAGATGTGTCCAAGTGTGCAATCACCGACG CCGGTTTAGCTGTTCTTTCCGGTGCCGGTCAGCTTAGTTTGCAAGTGCTTTCCTTGTCTGGCTGTTGTGATCTATCAAAC AAAAGTGTGGCTTTCCTGACAAAATTGGGCCAAACCTTGTTGGGATTGAATCTCCAACACTGCAGTTCAATTGGCAGCAG CACAATTGAGTTGCTGGTGGAGAACTTGTGGAGATGTGATATTCTGGCTTGA
Protein sequence (LotjaGi4g1v0271800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFTLLLLLQSLPLNLIIIFSVILTLVCDLKLFQLLSLRFFLVVDSAFNLIMPTLINYSGDDELYQGGSFCSSPMDLGRL YTISSNVDSYYPSTKRARVSAPFIFETLQKPGIEVLPDECLFEIFRRLPSSKERSSCACVSKKWLMLMSSICKAEIEDVE MRSSDEDEDIEGDGYLTRSLEGKKATDVRLAAIAVGTSGRGGLGKLSIRGSNSVRGVTNLGLSAVAHGCPSLKSLSLWNV SSIGDEGLSQIAKGCHMLEKLDLCLSSTISNKGLIAIAEGCPNMTTLNIESCSKIGNEGLQAVARFCPKLQSISIKDCPL VGDHGVSSLLSSASELSRVKLQSLNITDFSLAVIGHYGKALTHLVLSGLQNVTERGFWVMGVAQGLQKLVSFTVTSCRGV TDASIEAMGKGCTNLKQMSLRKCCFVSDSGLVAFAKAAGTLESLQLEECNRVTQSGIIGAISNIKSKFKSLTIVKCMGVK EIDADVSMLSPCETLRSLVIQNCPGFGSSSLAMIGKLCPQLQHVDLTGLYGITDAGLLPLLENCEAGLVKVNLTGCWNLT DNVVSTLARLHGGTLELLNLDGCWRITDASLVAIADNCLLLNDLDVSKCAITDAGLAVLSGAGQLSLQVLSLSGCCDLSN KSVAFLTKLGQTLLGLNLQHCSSIGSSTIELLVENLWRCDILA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 28 | 23 | - | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| Phobius | 61 | 683 | 623 | - | – | |
| PANTHER | 96 | 668 | 573 | 2.8E-285 | – | |
| PANTHER | 96 | 668 | 573 | 2.8E-285 | – | |
| SUPERFAMILY | 108 | 150 | 43 | 1.96E-8 | ||
| Gene3D | 114 | 151 | 38 | 1.1E-5 | – | |
| Pfam | 114 | 145 | 32 | 2.0E-6 | ||
| SMART | 116 | 157 | 42 | 4.0E-4 | ||
| Gene3D | 192 | 460 | 269 | 2.4E-54 | ||
| SUPERFAMILY | 215 | 454 | 240 | 1.29E-36 | – | |
| SMART | 229 | 254 | 26 | 5.2E-4 | ||
| SMART | 255 | 280 | 26 | 0.052 | ||
| SMART | 281 | 306 | 26 | 5.4E-4 | ||
| Pfam | 281 | 304 | 24 | 0.013 | ||
| SMART | 307 | 332 | 26 | 1.2E-4 | ||
| SMART | 358 | 385 | 28 | 120.0 | ||
| SUPERFAMILY | 382 | 624 | 243 | 1.57E-36 | – | |
| SMART | 386 | 411 | 26 | 8.1 | ||
| SMART | 412 | 437 | 26 | 0.2 | ||
| SMART | 438 | 463 | 26 | 230.0 | ||
| Gene3D | 461 | 682 | 222 | 2.4E-30 | ||
| SMART | 492 | 517 | 26 | 43.0 | ||
| SMART | 518 | 543 | 26 | 0.012 | ||
| SMART | 545 | 570 | 26 | 46.0 | ||
| SMART | 572 | 597 | 26 | 1.0 | ||
| SMART | 598 | 622 | 25 | 26.0 | ||
| Pfam | 599 | 619 | 21 | 0.33 | ||
| SMART | 624 | 649 | 26 | 260.0 | ||
| SMART | 650 | 675 | 26 | 720.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0271800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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