Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0273600.1

Overview

Field Value
Gene ID LotjaGi4g1v0273600
Transcript ID LotjaGi4g1v0273600.1
Lotus japonicus genome version Gifu v1.2
Description Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|I1LZP6|I1LZP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:64277510..64280327) extracted from Lotus japonicus Gifu genome v1.2.

TTACAGCAAAGCAAAATACGTACACAGATTATCAAACATAACTTTTTTAGTTTTTTATGACATGAAACGTGATTTTTAGC GTAGAGAAACGGTCACAAGAAAATACAACACGTACAACATACACCGGTTTCATTCAACTTCGTACTTCTCAGCTGTTACA AGTGGACAACAACGTCAGCAGACTCAGCTTCTCCCATTACCGCGTTCTATGACACGATCACGATCAAAGCAAACAAAATT AACATTGATTCATTGATTTCTTTCATTACGCGGTTCCGCAATCTCTTCTGCTTTGTCCTCCTTTTTCACTTTTCTCTTCT CTCTTTAATCTCATCAGCATCATCATTATGACTTACAACACACGCACCTGTTCATCTTAGCAGATCTTCAATGCCCATCA CTGAATAAACTCAATTCCTCACCAAACTTGCATAGAGTTTCTAAGTTTTGATTCAAGGAAGAAAATCTAGCATACCCATT TGAGCTTTTACAAAAATGGCATCGAGCACGATCCGCAAGGCGATTGGTGTTGTGAAGGATCAAACCAGCATCAGCATAGC CAAAGTGGCAGGTAATTTGGCCCCTGACCTTGAAGTCTTGGTGGTCAAAGCCACCAGCCATGAAGAGGTTCCTGCTGATG ACAAGTATCTCAGGGAGATTCTGAGCTTGACATCGTCTTCTAGGGGCTACATCAATGCTTGTTTGGTCACCATTTCAAAG AGGTTAGGGAAGACTCGTGATTGGATTGTGGCGGTGAAGACGCTTATGCTTGTTCACAGGCTTTTGGTTGATGGGCACCC TGTTTTCGAAGAGGAGATTGTTCACTCCACTCGCAGAGGGATCAGGATTCTCAACATGTCTGATTTCAGAGATGAGGCGC ATTCAAGTTCGTGGGATCATGCTGGTTTTGTCAGGGTTTATGCATTGTACCTTGATGAGAAGGTTGAGTTTGTGGCGTAT CAGAGGAAGCTGAGAGGTGGTGGTGGCGGTGGCAGTGGTGGTGAATCTGTGAATGAGGAATCGGTTGGGAGAGATCAGAT TCAGAAGAGTGAGGTTGTTACTCCTGTGAGGGAAATGGGAGCTGAGAGGGTTTTGGACAGGTTGAAGCATTTGCTGAGGA TTCTTGATCGTGTGTTGGGTTGCAAGCCAAATGGTGCTGCGAGGAATAGCAGGCTAGTGCAGGTTGCGCTTTACCAGGTT GTGAGGGACAGTGTCAAGCTTTATGTAGAGATTTGTGATGTGTTGGGGGTGTTGATGGATCGGTTTACGGAGATGGAGTA TGTACATTGTGTCAAGGCCTTTGATTCTTATGTGGATGCTGCTAAATTGATGGATGAATTGGTGAATTTCTATGGTTGGT GTAAGGAGATGGGAATTGCAAGGTCATCTGAGTACCCTGAAGTGCAGAGGATTAGTGATAAACTTTTGGGAGCTCTTGAG GGTTTGTTGAAGGAGATGGGTAATAGGAGGCAAAATAGCACTGAGAGGAAGTTAGAGGACAAGGTAATTGTAAAAATGCA AGAGCCAGAGCCAGAACAAGATATGAATGAGGTGAAGGCTCTTCCAGCACCTGAGAATTTCACACCTCCACCACCACCCC CTTCAATTCCTAAGGCAGCTCCTCCTCCTATACAACAAGAGACAAGCGATTTGGTGAATCTAAGAGATGATGGAGTTTCA GCTGATGAGCAAGGAAACAAACTAGCATTGGCATTGTTCTCTGGACCTGTTAGGACAGAAGGTTCATGGGAAGCATTTCC TTCAAATGGGGAACCTGAAGTTACCTCAGCTTGGCAGACACCAGCTGCTGAGCCTGGTAAAGCAGATTGGGAATTGGCAC TGGTGGAGACTAATAGCAACTTGTCCAAGCAGAAGGCTGATTTGGGTGGTGGTCTTGATCCACTGCTACTGAATGGGATG TATGATCAAGGTGCTGTGAGGCAGCATGTGAGCACGACTCAGCTGAGCGGCGGGAGTGCTAGCAGTGTGGCACTCCCGGG AATCGGGAAGAGTGCGACCCCAGTTCTGGCTTTGCCTGCCCCAGATGGGACAATGCAAGCTGTGGGGTCGCAAGATCCCT TTGCGGCATCGCTCTCGGTTCCGCCGCCTTCGTACGTGCAGATAGCAGAGATGGAGAGGAAGCAGCATTTGCTTGTGCAG GAACAGCAGCTGTGGCAGCAATATGGGAGTGAAGGGATGCAAGGTCAAGTAGGGTTAACAAGGCTTGCTGCTGGATCTGG TTACCATGTTGCTGGTTATGGAATGCCTCAACAGTTTGGTGGGATTGGGCAACCTGGAGGCTACTACCATGCACCATTTT GAGTTGAAGTGAGGGACTTGTTTCTTGCCAAACTTAGTCTTTTCCATGGCCATGAATAATATATCAAAGCCTGTTTTTCT GTTTGTCTGCGTTTGAGATATATATGTATACTTCGAAAGTTATATACCAAGTTGGGAAGAAAAAAAAGCTAAATACGAAT GAATGTATGAATGTCCTTGTCTTCTAACGTACTTCACCCTCTGGCCTCTGCCCTGTTATTTTGACACAATTCTGTTTTTC CTTCTAATTTATCAGTGGCAAACTTTCAGATCCTCTAGTATGTGTTATCTGTCCTTTTCTAAACATAGTTTTATATACCA TATAGTATAATGATATACATGGTCCCTAAACATATTCACCACAATTTTTTTAGGGTATAGGAGCAATTTCGCATTATTGT TGCCTTGATGGTGTCAACGAAGAGATCAGGGCGTGGTAATGCTCTCTGTCGACAATCTAATTTTTTGAAGATTGAGATGC GGTTCACCCTTTTTTGAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0273600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCGAGCACGATCCGCAAGGCGATTGGTGTTGTGAAGGATCAAACCAGCATCAGCATAGCCAAAGTGGCAGGTAA TTTGGCCCCTGACCTTGAAGTCTTGGTGGTCAAAGCCACCAGCCATGAAGAGGTTCCTGCTGATGACAAGTATCTCAGGG AGATTCTGAGCTTGACATCGTCTTCTAGGGGCTACATCAATGCTTGTTTGGTCACCATTTCAAAGAGGTTAGGGAAGACT CGTGATTGGATTGTGGCGGTGAAGACGCTTATGCTTGTTCACAGGCTTTTGGTTGATGGGCACCCTGTTTTCGAAGAGGA GATTGTTCACTCCACTCGCAGAGGGATCAGGATTCTCAACATGTCTGATTTCAGAGATGAGGCGCATTCAAGTTCGTGGG ATCATGCTGGTTTTGTCAGGGTTTATGCATTGTACCTTGATGAGAAGGTTGAGTTTGTGGCGTATCAGAGGAAGCTGAGA GGTGGTGGTGGCGGTGGCAGTGGTGGTGAATCTGTGAATGAGGAATCGGTTGGGAGAGATCAGATTCAGAAGAGTGAGGT TGTTACTCCTGTGAGGGAAATGGGAGCTGAGAGGGTTTTGGACAGGTTGAAGCATTTGCTGAGGATTCTTGATCGTGTGT TGGGTTGCAAGCCAAATGGTGCTGCGAGGAATAGCAGGCTAGTGCAGGTTGCGCTTTACCAGGTTGTGAGGGACAGTGTC AAGCTTTATGTAGAGATTTGTGATGTGTTGGGGGTGTTGATGGATCGGTTTACGGAGATGGAGTATGTACATTGTGTCAA GGCCTTTGATTCTTATGTGGATGCTGCTAAATTGATGGATGAATTGGTGAATTTCTATGGTTGGTGTAAGGAGATGGGAA TTGCAAGGTCATCTGAGTACCCTGAAGTGCAGAGGATTAGTGATAAACTTTTGGGAGCTCTTGAGGGTTTGTTGAAGGAG ATGGGTAATAGGAGGCAAAATAGCACTGAGAGGAAGTTAGAGGACAAGGTAATTGTAAAAATGCAAGAGCCAGAGCCAGA ACAAGATATGAATGAGGTGAAGGCTCTTCCAGCACCTGAGAATTTCACACCTCCACCACCACCCCCTTCAATTCCTAAGG CAGCTCCTCCTCCTATACAACAAGAGACAAGCGATTTGGTGAATCTAAGAGATGATGGAGTTTCAGCTGATGAGCAAGGA AACAAACTAGCATTGGCATTGTTCTCTGGACCTGTTAGGACAGAAGGTTCATGGGAAGCATTTCCTTCAAATGGGGAACC TGAAGTTACCTCAGCTTGGCAGACACCAGCTGCTGAGCCTGGTAAAGCAGATTGGGAATTGGCACTGGTGGAGACTAATA GCAACTTGTCCAAGCAGAAGGCTGATTTGGGTGGTGGTCTTGATCCACTGCTACTGAATGGGATGTATGATCAAGGTGCT GTGAGGCAGCATGTGAGCACGACTCAGCTGAGCGGCGGGAGTGCTAGCAGTGTGGCACTCCCGGGAATCGGGAAGAGTGC GACCCCAGTTCTGGCTTTGCCTGCCCCAGATGGGACAATGCAAGCTGTGGGGTCGCAAGATCCCTTTGCGGCATCGCTCT CGGTTCCGCCGCCTTCGTACGTGCAGATAGCAGAGATGGAGAGGAAGCAGCATTTGCTTGTGCAGGAACAGCAGCTGTGG CAGCAATATGGGAGTGAAGGGATGCAAGGTCAAGTAGGGTTAACAAGGCTTGCTGCTGGATCTGGTTACCATGTTGCTGG TTATGGAATGCCTCAACAGTTTGGTGGGATTGGGCAACCTGGAGGCTACTACCATGCACCATTTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0273600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSTIRKAIGVVKDQTSISIAKVAGNLAPDLEVLVVKATSHEEVPADDKYLREILSLTSSSRGYINACLVTISKRLGKT RDWIVAVKTLMLVHRLLVDGHPVFEEEIVHSTRRGIRILNMSDFRDEAHSSSWDHAGFVRVYALYLDEKVEFVAYQRKLR GGGGGGSGGESVNEESVGRDQIQKSEVVTPVREMGAERVLDRLKHLLRILDRVLGCKPNGAARNSRLVQVALYQVVRDSV KLYVEICDVLGVLMDRFTEMEYVHCVKAFDSYVDAAKLMDELVNFYGWCKEMGIARSSEYPEVQRISDKLLGALEGLLKE MGNRRQNSTERKLEDKVIVKMQEPEPEQDMNEVKALPAPENFTPPPPPPSIPKAAPPPIQQETSDLVNLRDDGVSADEQG NKLALALFSGPVRTEGSWEAFPSNGEPEVTSAWQTPAAEPGKADWELALVETNSNLSKQKADLGGGLDPLLLNGMYDQGA VRQHVSTTQLSGGSASSVALPGIGKSATPVLALPAPDGTMQAVGSQDPFAASLSVPPPSYVQIAEMERKQHLLVQEQQLW QQYGSEGMQGQVGLTRLAAGSGYHVAGYGMPQQFGGIGQPGGYYHAPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22951:SF62
1 597 597 0.0 –
PANTHER
PTHR22951
1 597 597 0.0 –
Gene3D
G3DSA:1.25.40.90
3 156 154 6.6E-42
IPR008942
ProSiteProfiles
PS50942
24 160 137 31.938
IPR013809
SUPERFAMILY
SSF48464
30 153 124 3.78E-33
IPR008942
SMART
SM00273
30 160 131 2.3E-45
IPR013809
Pfam
PF07651
31 319 289 4.7E-81
IPR011417
CDD
cd16987
32 152 121 1.44237E-62 –
MobiDBLite
mobidb-lite
161 181 21 - –
Gene3D
G3DSA:1.20.58.150
181 336 156 5.6E-34
IPR014712
SUPERFAMILY
SSF89009
190 320 131 7.06E-35 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0273600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…