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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275400 |
| Transcript ID | LotjaGi4g1v0275400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CCR4-NOT transcription complex subunit 10; TAIR: AT5G35430.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q08CL8|CNO10_DANRE CCR4-NOT transcription complex subunit 10; TrEMBL-Plants: tr|V7CDT0|V7CDT0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0275400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64575198..64577830) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTAATGTTTTACATCCCTTTTTTGTGTTATGTTTCCTAAAGCAGACAACGGCTCTACATATTTGCCTTTTGCTGCT TGATGCTAGCCTTGCTTGCCATGATGCATCAAAATCAGCTGTAAGTTCCATTTGATAATTTGGTTTACATTTTAATTATT GCAAGTTTTGTTGCTTAATGCATTGCTGCCAACTGTGTTTCAATCTCATGAGTGTATTGTGCTTTTTACCTTTTCTTTAG TTTGCAGCTAGTTAATTATTTACTGATTATAAATTAGCTGTAACATTATTTATTAGGATTTGGATCTTCTCATTTTGGTT CCTAACATAAAAGCTTGTTACTTTTTAGGGGTAGGGAGAGCTAGAGACTACATTAAATGTGGGCCCCACTGTAATAGTTG TATATAATTGTTTGTTGTTTATCTCTTTTTGAAAACTCTACCCCAGTTTCTCTTTTAATGAGGTCAAACTGAGTTTACAG TGCATAAACTTACTTGATTTGATTGTTTTCTCTGATAGAATATGATGCAAAACTTTCTTGGCAGTTGGTCTATATTTCTC TCTCTCTCTCTCTCACACATAATTATGTTATTGAGTGAATGTCTTGAAAGAATTTCATTGTTTTCGGCTTTTTAGCTTCT CTAATTCTACAAGTGTACTGTTCTGAGCTGGAATCTATTTGTTTAGGATGTGTTGACTTATCTGGAAAAAGCATTCGGTG TTAGTAGCGTGAGTCAAGGTGACAGTGGGAACACAGCACAACAGCAATCTGCAAATCTAATTACAAAGTCTGCACCAGTC ACCTTGAGTGCATCAGCTGCTGATGCATCCAGTTCTGATCTAGGGTCAACTGCTAATGCATCTGAAAATCATCTGTCCAG AGCTGAATCTGAAGATACACTTGATTATGAGGCCATGATTGTGGATATGGGTGGACAAAGTTTAGCCAGGGCAATGGGTC CATCTTCAAATGATATTTCTAGGGCTTCGGTTGACAGGTTTTCAACTGTTGATTTGAAGCTTAAGTTGCAGCTTTACAAG GTTCAGTTTCTTCTTCTTACTAGGAACCTAAAGCTAGCCAAGAGAGAAGTTAAGCTGGCTATGAACATTGCACGTGGAAG AGATTCACCTATGGCTCTTCTTCTGAAATCTGAGCTTGAATATGCTCGTGGTAACCACCGCAAAGCAATAAAGCTATTGA TGGCATCAAGTAATCGAACAGACACAGTTTTCTCAAGCATTTTTAACAACAATCTTGGGTGCATTTACTATCAGCTCGGG AAATATCAGACATCCTCATTATTCTTCTCAAAGGCTTTAACTAATTGTTCGTCCCTGCGAAAGGACCAACCATTAAAGCT AGCCACTTTCTCGCAGGATAATTCTCTCCTTATAATGTACAACTGTGGTGTGCAGTACTTGGCTTGTGGGAAGCCAGTAC TTGCTGCTCGGTGCTTCCAGAAGGCAAGTTTGGTCTTTTACAAACAGCCTCTCTTGTGGCTCCGACTCTCAGAATGCTGT CTGATGGCTTTAGAAAAGGGCCTAATAAAATCAAATCGGGTTCCTTCAGAAAATTTAGAGGTTGGAGTTTGTGTTGTTGG GATGGGAAAATGGAGGCAACTTGTTGTGCAAGATCAAATTCCAGGAAAAGGAAATGTGGACTCATCTGAAGGGAATGATT GCTTTTCAAGTGAAAATGGGCGGCAGAAGTTATCGATGTCCCTTGCCCGACAGTGCCTCTTGAATGCTCTGCACTTGCTG GACTCCTACAGTACAAATTGTTTGAAGTCTGGTTTGCCCTCTAATTCTTCAGTGGAAGAAATTGATCCAAATGAAGTGTC ACTGTCAAAGAGTTCGAATCTTAAAAACTTGCATGGGGTTGATTCAAAGGCATTTTCTGTAGCAGTAGGCTTAGGTCAGG TTAATTCAAATGGGGACGTAAAAGAACAAAAGGGAGGAACTAGTCAGGAACTCATTCAGAACTCTCTCTCCTATTATGAA GATGTCCGTAGAAGAGAAAATCAATTGATCAAGCAAGCTGTTCTTGCTAATTTAGCATTTGTGGAGCTAGAATTGGACAA TCCTGTGAAGGCACTGTCAGTTGCAAAACGTCTCCTAGAACTTCCAGAATGTTCCAGGATTTACATCTTTCTAGGTCGTG TTTATGCAGCAGAGGCTCTCTGCTTGCTAAACAGACCAAAAGAAGCTGCTGAGCTCTTGTCAATTTATTTGTCAGGGGGA AACGATGTTGATTTGCCATTCAGCCAAGAGGACTGTGAGAAATGGCAGGCGGAGAGGACTGCTGAATTTGAAGAGGTAAA TGGAGGATCCACTGCTACCAATAATTCTTCTTTTGAGGACACTCGAAGGATTGTTTTCCTCAAACCAGAGGAGGCACGGG CTACAATTTATGCAAACTTCGCAGCATTATCTGCCATGCAGGGTGAATTTGAGAAAGCAAATGTATTGGTTACGCAGGCA TTGTCCATATTACCCAACAGTCCAGAAGCCATACTTACTGCAGTTTATGTGGATCTCTTGGTTGGCAAGCCACAGGAAGC TCTAGCCAAATTAAAAAGTTGTAGCCGAATTAGGTTCCTTCCTAGTGGAGTAGCATTGAATAAATCTTCTTGA
CDS sequence (LotjaGi4g1v0275400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGTGGATATGGGTGGACAAAGTTTAGCCAGGGCAATGGGTCCATCTTCAAATGATATTTCTAGGGCTTCGGTTGA CAGGTTTTCAACTGTTGATTTGAAGCTTAAGTTGCAGCTTTACAAGGTTCAGTTTCTTCTTCTTACTAGGAACCTAAAGC TAGCCAAGAGAGAAGTTAAGCTGGCTATGAACATTGCACGTGGAAGAGATTCACCTATGGCTCTTCTTCTGAAATCTGAG CTTGAATATGCTCGTGGTAACCACCGCAAAGCAATAAAGCTATTGATGGCATCAAGTAATCGAACAGACACAGTTTTCTC AAGCATTTTTAACAACAATCTTGGGTGCATTTACTATCAGCTCGGGAAATATCAGACATCCTCATTATTCTTCTCAAAGG CTTTAACTAATTGTTCGTCCCTGCGAAAGGACCAACCATTAAAGCTAGCCACTTTCTCGCAGGATAATTCTCTCCTTATA ATGTACAACTGTGGTGTGCAGTACTTGGCTTGTGGGAAGCCAGTACTTGCTGCTCGGTGCTTCCAGAAGGCAAGTTTGGT CTTTTACAAACAGCCTCTCTTGTGGCTCCGACTCTCAGAATGCTGTCTGATGGCTTTAGAAAAGGGCCTAATAAAATCAA ATCGGGTTCCTTCAGAAAATTTAGAGGTTGGAGTTTGTGTTGTTGGGATGGGAAAATGGAGGCAACTTGTTGTGCAAGAT CAAATTCCAGGAAAAGGAAATGTGGACTCATCTGAAGGGAATGATTGCTTTTCAAGTGAAAATGGGCGGCAGAAGTTATC GATGTCCCTTGCCCGACAGTGCCTCTTGAATGCTCTGCACTTGCTGGACTCCTACAGTACAAATTGTTTGAAGTCTGGTT TGCCCTCTAATTCTTCAGTGGAAGAAATTGATCCAAATGAAGTGTCACTGTCAAAGAGTTCGAATCTTAAAAACTTGCAT GGGGTTGATTCAAAGGCATTTTCTGTAGCAGTAGGCTTAGGTCAGGTTAATTCAAATGGGGACGTAAAAGAACAAAAGGG AGGAACTAGTCAGGAACTCATTCAGAACTCTCTCTCCTATTATGAAGATGTCCGTAGAAGAGAAAATCAATTGATCAAGC AAGCTGTTCTTGCTAATTTAGCATTTGTGGAGCTAGAATTGGACAATCCTGTGAAGGCACTGTCAGTTGCAAAACGTCTC CTAGAACTTCCAGAATGTTCCAGGATTTACATCTTTCTAGGTCGTGTTTATGCAGCAGAGGCTCTCTGCTTGCTAAACAG ACCAAAAGAAGCTGCTGAGCTCTTGTCAATTTATTTGTCAGGGGGAAACGATGTTGATTTGCCATTCAGCCAAGAGGACT GTGAGAAATGGCAGGCGGAGAGGACTGCTGAATTTGAAGAGGTAAATGGAGGATCCACTGCTACCAATAATTCTTCTTTT GAGGACACTCGAAGGATTGTTTTCCTCAAACCAGAGGAGGCACGGGCTACAATTTATGCAAACTTCGCAGCATTATCTGC CATGCAGGGTGAATTTGAGAAAGCAAATGTATTGGTTACGCAGGCATTGTCCATATTACCCAACAGTCCAGAAGCCATAC TTACTGCAGTTTATGTGGATCTCTTGGTTGGCAAGCCACAGGAAGCTCTAGCCAAATTAAAAAGTTGTAGCCGAATTAGG TTCCTTCCTAGTGGAGTAGCATTGAATAAATCTTCTTGA
Protein sequence (LotjaGi4g1v0275400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIVDMGGQSLARAMGPSSNDISRASVDRFSTVDLKLKLQLYKVQFLLLTRNLKLAKREVKLAMNIARGRDSPMALLLKSE LEYARGNHRKAIKLLMASSNRTDTVFSSIFNNNLGCIYYQLGKYQTSSLFFSKALTNCSSLRKDQPLKLATFSQDNSLLI MYNCGVQYLACGKPVLAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKSNRVPSENLEVGVCVVGMGKWRQLVVQD QIPGKGNVDSSEGNDCFSSENGRQKLSMSLARQCLLNALHLLDSYSTNCLKSGLPSNSSVEEIDPNEVSLSKSSNLKNLH GVDSKAFSVAVGLGQVNSNGDVKEQKGGTSQELIQNSLSYYEDVRRRENQLIKQAVLANLAFVELELDNPVKALSVAKRL LELPECSRIYIFLGRVYAAEALCLLNRPKEAAELLSIYLSGGNDVDLPFSQEDCEKWQAERTAEFEEVNGGSTATNNSSF EDTRRIVFLKPEEARATIYANFAALSAMQGEFEKANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAKLKSCSRIR FLPSGVALNKSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 565 | 544 | 1.4E-169 | ||
| Gene3D | 33 | 208 | 176 | 1.3E-10 | ||
| SUPERFAMILY | 69 | 203 | 135 | 2.75E-10 | ||
| SMART | 108 | 141 | 34 | 1.3 | ||
| ProSiteProfiles | 108 | 141 | 34 | 5.841 | ||
| SMART | 158 | 191 | 34 | 140.0 | ||
| SUPERFAMILY | 361 | 555 | 195 | 3.92E-8 | ||
| ProSiteProfiles | 496 | 529 | 34 | 9.058 | ||
| SMART | 496 | 529 | 34 | 24.0 | ||
| ProSiteProfiles | 496 | 529 | 34 | 8.113 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | CCR4-NOT complex | The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins. |
Expression pattern of LotjaGi4g1v0275400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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