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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275600 |
| Transcript ID | LotjaGi4g1v0275600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein, putative; TAIR: AT4G32150.1 vesicle-associated membrane protein 711; Swiss-Prot: sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711; TrEMBL-Plants: tr|I3T6Y7|I3T6Y7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64604591..64607566) extracted from Lotus japonicus Gifu genome v1.2.
CAACTATCATGATCCATTTGAGTAGCATCCACCTCCAAATTTTGCGCCAAATTTGGTGCCACCAAAAACGCCATGGTACA CATAAAATACAGGGCTAGAGGGCAGAGTTTCCTCTTCAATTTCCAGAGTGTCCTTTACCCTCAAAACAACCCCATTTTTG GACATGAAATCAAATCAAAATGGACACTTTGTTTTCTCTTCTTCCTCGTCTTGGTGTTGGTGGTGTTGTTGCACCTCCTC CAAAACCAATTCTGTTACACTTTTCTCTCCACCTAAAACAACAGAAAATTTTTCACCTTTTTTCACTACCAAATTGACCC AGTTACAATATTTGATTTGAGCATCAATGGGGATACTGTATGGAATGGTGGCAAGAGGGCTTGTGGTTTTGGCTGAGTTC AGCGCGATCCAGGGAAATGCAAGTGTGATTGCTAAGCAGATACTTAACAAGATCAATCAAGGGACTGATAACTACATTGA TAGCAATGTTTCCTTTTCCCATGATCGCTATGTTTTTCATGTCAAGAGGACCGATGGCCTTACTGTTCTTTGCATGGCTG ATGATGCCTTTGGAAGTAAGCTTCCTCTCAATCATTCATTGATGATTCATTAATAGTCTGTTTGTTTCCACTATGAAATG TTCTATGATCAATTCTGGTTAGAAGCTAGGTAAATGTGCATTGGATTGTCCGCAAATCAAACCAAATATGATATGAATTA AACAATTTTGATCCAAATGATAATGTTTTCTTTTCTGGGGCGGCACAAATGAATTGATTTGCTTGTTGTTTTATGGATTT GGTGCTCTTTTTAACATAGATTGATAGGATATTTGGATCTATTTTTCTTTGACCGAAATCAATTCTGAAAGCTACTCATA GAAGTTTCTCTACATAATTGATTTTGGCTGCAGAATCAATTGTTGAAGGGTTAACAAACATGCACCGGATGATTTATTCA ATTGTTGAGTTTTAGATAGATGTTTTAAAGTGCCTAGAATGTCTCCTTGGCCATGATGTGCATTAGAACTGCATGTTTTC TTTGACATAGGTGGTTATTTGCTGCAGAATTTTACTACATAATGAACTTCCTTTTAGTGGGAAATTTTGAGTAGAGATGT TAGACAATCTTAGGTAATCTTGTTTGTTAGGTAAAATTTTCTCTCTGTTCTTGAAATCATATGTATGGCCATACCAAAGT TTCATTTTTATGGTTATGAGATTCCATGTGAGGTTAGCTAAAGATGTCCTATAAATAATGTGATATGCAAAAGCAAGAGA AAGGCCAAACTGTTGGCACCAAGATTCAACCAAATGTGGTCAATTTTGCAAATGCTCTCTCCCTCTCCCTCCCCATACCC TCTCTCTGTTTGTTGTGGGAAGGACAAGGCTATACTTTTGTGATCACAAGATTATTTAGTGCTGATTTCCCCCTTTGATT TTAATGTTCAGATTTGTTGGTAGCTTAATTGAAAAAACTTATGCATGTTTGGATACACAGTAGATTTTCACGTTGGAAGG AGAATTGATTCTAAGAAAAGTCACTCCTAGTAGCTTTTGTGGGAATATAATTGATTCTAGAAGATTTAAACATGGATCCA AATATGTTACTAGAAGAAGTAATATAGTAGCTTTATCTAAGATGATTGTTGGTAGCTTAATTTACAAACTGTTAGCAATA AAAAATGTTCCTGGTTGGCTTGTTACACATTAAGTCAGCAATCCCTGAATGAACTGTAATGAATCTTCTCTTTCAATCAT TGCAGGAAGGATCCCTTTTGCATTTCTTGAAGATATCCATACAAGATTTGTGAAGACATATGCCCGTGCAATTCTTTCAG CTCCTGCCTACGCCATGAACGACGAGTTCTCGAGGATCCTGAACCAACAGATGGATTATTACTCTAACGATCCAAACGCT GACAGATGCAACCGTCTCAAAGGTGAAATGACTCAGGCAAGTTCAAAATGTGTACACACCTTTGGTTATATCTTCATGTT TTGTTTGCACCAGAAGCTACTATTAGAAGCTTCTCCCAAAATTGATTTTGACTTTAGAATCAACTAAATGTCTCAATTAC AGTTGCTTATCAGTCTCCTTGTTCTACCCATTAATACGTAACGTATAAGGATACCTTGTTCTAGTTTAATGTTGACAGTA AAACCTCATATTCTTGTCTTATGATGATGATAGGTGAGAACCATTATGATTGACAACATTGAGAAAGTGTTGGAGAGGGG TGGGCGCTTGGAAATGCTGGTTGAGAAAACTTCAGCAATGAACAACAATGCAATCCGTTTCAAAAGCCAGTCCCGCCGAT ATAAAAATAACTTGTGGTGGAGAAATGTTAGGTTAACGTAAGTATATACCAAATGCAATGCAGATTTTGCATATTCTATT AATTTTTCCAAGTTTGGGTTAAGCTTTTATCATTATCTTGCTTCTCTGGGATTTCTTCATCACCCTGGATGTCATGAATT AGTACACTATTGCACTTATTTTTTTTATTTTTTCTGATAAAAGTAGGTTTAATTATCTAAATATCTTATGACCCTCCCCT TATTTTTCCTGCAGGGTTGCACTTATCTTAATTTTTGTGATCGTAATTTACATTATGCTCGCTTTTATCTGCCATGGTCC CTTGTTGGCTTCTTGCTGGAGATAAGCTCACAAGGCTAAGTGTGAATTATTTTTGCACTACTCTTTGACCAGGTCATTTT GTTCTTAAGAGTACAGTGTATTGGGTCAACCATAAAGGAATGAATATAATGTATTGGAATGAATGCAATCATTTGTCAAA TGTAACCATCCTAGGCTTCCACATGTTTTAGAAAATTACTTTGCATTGTGGTGGATGACTACCCAACTGAAAGAATACTT TGTTACATGACCTACACCCTTCTACCCCCTCACTCCCCCTTCAACCAGCAAAGCCAGAAAATCAATCGGAATTCGAAACC TCCACACCTAGAAACC
CDS sequence (LotjaGi4g1v0275600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATACTGTATGGAATGGTGGCAAGAGGGCTTGTGGTTTTGGCTGAGTTCAGCGCGATCCAGGGAAATGCAAGTGT GATTGCTAAGCAGATACTTAACAAGATCAATCAAGGGACTGATAACTACATTGATAGCAATGTTTCCTTTTCCCATGATC GCTATGTTTTTCATGTCAAGAGGACCGATGGCCTTACTGTTCTTTGCATGGCTGATGATGCCTTTGGAAGAAGGATCCCT TTTGCATTTCTTGAAGATATCCATACAAGATTTGTGAAGACATATGCCCGTGCAATTCTTTCAGCTCCTGCCTACGCCAT GAACGACGAGTTCTCGAGGATCCTGAACCAACAGATGGATTATTACTCTAACGATCCAAACGCTGACAGATGCAACCGTC TCAAAGGTGAAATGACTCAGGCAAGTTCAAAATGTGTACACACCTTTGGTTATATCTTCATGTTTTGTTTGCACCAGAAG CTACTATTAGAAGCTTCTCCCAAAATTGATTTTGACTTTAGAATCAACTAA
Protein sequence (LotjaGi4g1v0275600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGILYGMVARGLVVLAEFSAIQGNASVIAKQILNKINQGTDNYIDSNVSFSHDRYVFHVKRTDGLTVLCMADDAFGRRIP FAFLEDIHTRFVKTYARAILSAPAYAMNDEFSRILNQQMDYYSNDPNADRCNRLKGEMTQASSKCVHTFGYIFMFCLHQK LLLEASPKIDFDFRIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 1.3E-81 | – | |
| PANTHER | 1 | 147 | 147 | 1.3E-81 | – | |
| Gene3D | 1 | 131 | 131 | 2.1E-41 | – | |
| SUPERFAMILY | 3 | 122 | 120 | 4.27E-29 | ||
| CDD | 4 | 122 | 119 | 2.32998E-33 | – | |
| ProSiteProfiles | 7 | 115 | 109 | 30.337 | ||
| SMART | 28 | 114 | 87 | 9.3E-26 | ||
| Pfam | 29 | 112 | 84 | 5.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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