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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275800 |
| Transcript ID | LotjaGi4g1v0275800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64612776..64619032) extracted from Lotus japonicus Gifu genome v1.2.
ATAGACGCCGACGACCAACCAAACCAAGCTCATATTGTCTGTCAGACTTTTCTCTCTCTCTCTCTCTCTCTCTACCCTTC TTCCATTCCTCTTCTCCATTCACCTTCAGCTTCACCAGGTAAATCCACTTCTAATCTCAGATCTTTCGCTTTTGCTTTTC TTCTTTCTCTGAACCCACTCCTCTACTTGCGCTCACGATTCGCTCAATTTCTATAAGCTGACCATTTCTCAACAATGCGC TACTTTTCATTTTTATTTTTTATTTTTTGTGTTTTTGTCGTTATATGTATCACTTCTTCTTTTGAAGTTTTGTTATTCAC AGCTTCGGGTTTTTTCCTTCTGTCGGTGATGGTTGTTTTGTTTCCTTTGTTGGATCTGAATACTGTGATATAACAATCGT GTTATTTAGTTTGATTTAAGACTTCATTATTGTTCTTCCTTTATTGATGTGTGAATAGTTGAGTTTGCAATGGAAGGAGT GAGATTTGGGCATGGCCAGAATCTGATTTTAATTTTTTTTTCAGTTTTGGCAGAATTTTGTAAATTGAGATAGGCAGAGA GCCATGTCAGGGGGCAATAGTATCAGAAAAGCACTTGGAGCCCTTAAGGATACCACCACTGTCTCCTTGGCTAAGGTCAA CAGTGATTACAAGGTAGAATCATTATGATGGGATCAAGTATTTTGCATTTGTTTTTCATAGTGTATGTTTGGTTTGACGT TGACGTGAATGCGCAAATGTGAATTCACGATGGAGAGGCTCGAATTTGTCATGTTATGTTTATCTTGGATCGGAGAAGCA TGATTTTACCACGTGGGATCCAAATTGAATTCAACGGAAATCTGAACATATACTTAATGGTTTTTTTTTTGCATTTCAGG AGTTGGACATTGCTATAGTTAGAGCCACCAATCATGTTGAACGTCCATCAAAGGAGAAACATATAAGAGGTTGTTCTCTC CCTCTCTTTCTGGCTATTTGCACTGAAATAAGCTGTGGTTTATGTACTAGTCTACTACTCTTTGTTTCTACCATTTGCCA CATATTTGTAGAAGGAATGTTTTGGGTGCGTTAGCGTTTTGATGGTATTTCTTTGTCCTCTATTGCAGCTATATTTTCAG CAATCTCAGCTACAAGACCTAGGGCCGATGTTGCCTATTGCATCCACGCACTTGCAAGGCGATTGTCAAGGACACATAAC TGGGCGGTATGTGCACGGTGTCTTAGATCTTGTGTAAAAGATGGTTGATTAACTTTGTGGTCGAATTGTAACTTAACTTT TTTGATATGGAATGAAAATTAACACTGTTCAATATAGGACTGGGAATATGTGATGAAGCTTGTATGAATTTATTATCTGG TGGCCTATAATCTTTGTTGCCAAGGTTGATGAAACATCACATTGGCAATGGCAAGTCATATTCATGATTGTTTTGTGTCG TCGTGTCTGGAGGTCATGGTTTGATAATCACATTTGATCTTACTTATAGGCTTATAGCTAAATAAATGTGGGACAAAAAG GACATCCAGATAACATTATTAACAAAAATCTTCCTGAGACATGTTTTTAATTACCTTCTATATTAGTATTGTTCGAAAAG TATAATCATTTCAGGTAACTGACCTTGTTTGAAGACTTGTAAACATATACTTTTTTCATCTTGTTCTGAACATTCAATAT CTGTTTGCACTATATTGGCATGACAACTATTATGAATCAGCTTTCCCAAAAGTTAAAGCTTTTAAGTGAAGATACATGAA TAATTTTATAGTTTATTTCTAAATCTGTACCATTGGGATTCACAGGCCCATTTACCTTATGCTTAAATTCAACCTTGTAT AGAAGAATCAGGGTAGCAAGAAATTGATCATAGAGGCTCTGATACTATGTTATGAATGAATTGTATGAAAATTTTAAGCT TTTTGGTAAACACATGAATGGTTTTACATTACATTTCTAATGGCTTCTTCTGTTTTAGTGTAATTTTTCAGTTGCCTTTT TCACCACCGAGCATGTTTGTGCTGTTTCTACTTGTTTGATTGACGAGTGGTTTATCTTTAGGTTGCATTGAAAACTTTAG TTGTGATTCACCGTGCTTTGAGGGAAGTGGATCCCACATTTCATGAAGAGCTCATTAATTATGGGAGAAGTCGAAGCCAT ATGCTCAACATGTCTCATTTTAAAGATGATTCCAGTCCAAACGGTGCTTGTGTTTCTCCCTGGCATTGATTTTACTATCA GTTTCATTATGATGTTTATTGACTTTGTAGTTGTCATTCATTTACTTTGTTTTGTTGTTTAGCATGGGATTATTCTGCAT GGGTCCGCACTTACGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAAGCAGACCGT CCCGTAAGTTTTTCTTTTGGTTTATAACGTTTTTCATTTATTTTTTAACTTAATTTTTCATAATTTAGATTTTTCACTTA AACATAAGTAGTTAAATCATCTAAATGTTAATGAATATTATTCTATAATAGTTAATACGGGAAAGTCCTCACCCGTGATC ACTATCTCATCACGTACTTTGAGAAAACTCACCGATTGTCATTTTTGTCAGAGGACCAAAGATTTGGATACTGCGGAATT GCTAGAGCAGTTGCCATCTTTACAACAACTTCTATATCGAGTTATCGGTTGCCAGGTGAGCTTTTGATCCTAGTAGTTCA AGATAGATTGAATTTTGACCAAAAAATTTCACATATGGTAGATTTGATTTTATTGAGCAGATTTAGTATTTTACAATTTA TAATACCAGCAGCATTGATATTGTATAGTTTGTTTTAACTTTTATGTGGTGCAGCCACAAGGGGCAGCTATAAATAACTT CATCATTCAGTTGGCACTCTCAATGGTAGGTCAATTATTTAAGTAACCATACTGTATTTTTATTCTTTTTGTCTTTGATC ACCTTTCTGAAACATACTTTACATTACAAATAGGTTGCTTCGGAAAGCATTAAAATTTATCAGGCTATCAGCGATGGAAC TGCTAATATGGTTGATAAGGTATGTATTGTTATCTCCATAGACTTGAAGCTTGATGTTTAACTCCCTGTGTATTTATGAG ATTATTGTGACAGTTTTTTGAGATGAATCGCCAAGATGCTTTGAAAGCTATTGATATTTACAGAAGGGTTGGCCAGCAGG TATCATTTAGCAGAATTTTCTTTTTTTCTTTTCTTATATTATTTATCCAGAAAGTCATGTTTTAAACAAGCTTTATATGA ATCAGGCTGAAAGATTGTCAGAGTTTTATGAAATATGCCGTAATCTTGATATTGGACGTGGAGAGAAGTTTATTAAAGTT GAGCAGGTTGGTCAGTTCTTATATCATGCTTGTTTATGCTGATGACATTTTACCTACGCTTTTCAATAACTTTTTATGAA ATATAATAACTAAGTGTGCTGTTGAACATATGAAGCCCCCTTCATCCTTTCTGCAAGCCATGGAAGAGTATGTCAAAGAT GCTCCTCAGGGATCAATAGCTCGCAAGAACCAGGTATAAATGTCAAGATTTTGTTTTATATAATGGTGGTATCTATGGCT TTTATGTTGTGGCTGCATCATGAGGAGCAAGTATATATTTAATACACCTCTAGTTGACACGATAGGCACAAATGGAGGCA GGGAAAGGCCTAGTTAGCTATCTACTAGTTAAAAAGTAATATATTTGCTAGTGAAGATTGCATTTTTATTTTAATAAAGG TGGTTAAATCATTGTTGCAATCTGGCAGGTAGGTGAATACAGAAAATTTGAAGTTAATACATCGTACTTGTTCCCATCAA GTTCTTCGAGGAATTCTGTTCTTTGTCTCATCAAAACATTTTTGGAATCTCTTCCATTACTTCAAGAAATGTTCTTGTTC TTTCATGATAATATATGCTATACTTCAGTTGCATATAGCAATACTGGCTGTTTGGTGGTAACTTTCATATATTTGTAGAC ACAGTCACACAGTGCTCATTGCTGTCATCTGCATACAGTTTCCACTTTTGTTTGAGGAATTCATTTGTTGTTGCTATGTT CTAACTTGATTATGTTTCTTCTATCTGGATGAAAACGATATTCATTTGCTGCAATAATATATTTACTAACCAATGATTTA ATATTAATCTAAATCAGGCCGCAGACAACAAAATTGCCTCTCCAACGGAAGTTTTGGCTATTGAATACAAAGAGTCTCCA GAAAGGCAGGAGGACCATTCACCCTCACCCAGTCCACCTCCGCCTTCTGAACCTGTGAAAGTTGAAGTACCACCAGTACA ACCACCACCTGATTTATTGGTAATTATTATGGATTTTGGTATAACTGAGATTGCAGACTGGTGCTCTACTGGTAATGCTT ACCTATATTAATGCTGCTTTACCTGTGCTAACAAAGTTCTCTCCTTTTGGCTTGCTATCTAGAATTTGGATGATCCTGTT CCAGCTGCAGCAGAGTTGGAAGAGAAGAATGCCTTGGCTTTAGCCATTGTTTCTGTTGGTAATTTGTTGTCCTTTGCCTC TATTTTGTTTAATAGATTGAATAAAAGCTTCTTAATCTGCACTTGTGAGCCTTTAAAAATAATTAATAATAATAGTTAGT TCATAGAAGTCAACTGAACTGGTTGCCTTTCAAGAATAGCGAGTTTTCACATTGTTGGGATGAAACCTCTTCATATTAGT GGCTAATCGTGTGAATTCTACTCCCGCGCCGTTTTCCTCTTTCTGCACTTCGTTGCCTGTTTTGATTAGAATGCTCCATT TGATATTTAAAATAGATAGATGCAAGCATGTCTTGGTGTTGATTCATAAGATTACTTGTTAATGGTGGTTTCAGCTGATC AACAACCTACCGCTGTTTCAAATCACGCAAATGGAGTCACAGGATGGGAATTGGCACTTGTCACGGCTCCTAGTTCGAAT GAGAATGCTACAACAGCTAGCAAACTGGTATTCTTTCTTCTCTAATAGTCAACTCAATCATCATACTGTTGGCTCACATT TCTCTCAACATGTTGTATGCACACATGCTTTTGTTATTCTGATAATAAGTGATATCATCTATTGGGTAATCAGGCTGGAG GCTTTGACAAGCTTACACTAGACAGCCTATATGATGATGCACTCAGGCGAACCAACCAAAATGTCAGCTATAATCCATGG GAGCCGGCACCAGCAGGAGCCACGATGCAGCCGACGATGCACGATCCATTTTTCGCCTCTAATGCAATGGCTGCTCCACA TTCTGTTCAGATGGCAGCCATGTCCAACCAGCAGCAGGCTTTCATGTATCAACAGCAGCAGCAGCAGCAGCAAATGATGA TGATGCCGCCTCAACAGCCGGCGGCAAATCCTTTTGGAAATGCTTATGGAGGAGCTACCGTTCACCCCTATGGATCAGGT ATGCCTGTGCAGTCGTACAATCCATATACAGGCCTCATCTAGACATCTTGTCTGGAAAAGAAATCGTTAATAAGCTCAAG TGAAGAGAAAGAAATGCGGATACTCGGCTTTCGGCTTGTGTTTTGGAGGCATGAAGAATGGACAGTTGTATCATATATTC ATATGTCTTTTGTGTGCCATAGATAGCAAGATTGAAATTCTTTTGGAATAATTAGCAGAGGGAAGGGGGGTTTTGGTTAA TATGATTTTTTATGTACAAGGTAATTCATAATCAGCTTTAATTCAAACCACGTAGAATTTTTATCCCACATTTATTATTG TTAACTCTTTAGCAGGAAATTTGTTCTTGATAAATTGAATTATTATTGTTTTCAGTTGTCATTCCCTGTAAATGGTGTGG GGAGTATATTCATTGTGATTGTTTTACCAACATTTATTCAATGAAAATATGTCTAGTGTGAGAATTGAGTATTTTTTGGT GTGAGGAACAATTTGTTCTTCATTCTCGTGTGTATGGTGCTATACTGCTATTCTCTATGATTGTTTCTACTTTCTACACA TATTTAATTTATACTCTCTTTATTTTACTGCAAGGATGAATTAAAAACGCATAGAAGTAGTTGTGAACGGATTTATAGGG CAGACTTGAGTGAAGAGAGAAGAGGTGTGTTTGCTTCCAAATTCTATCCTCAAAGCATATCTTCTCTCGTGCATTCCTAG ATCTGTGTTGTCAGTTGTCACCATAGAGGCCACCTAGAATAAACGAGAATCTCTAAACATTTATGAAAAGAATGATAGCC AAAAAAATTGACCTACC
CDS sequence (LotjaGi4g1v0275800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGGGGCAATAGTATCAGAAAAGCACTTGGAGCCCTTAAGGATACCACCACTGTCTCCTTGGCTAAGGTCAACAG TGATTACAAGGAGTTGGACATTGCTATAGTTAGAGCCACCAATCATGTTGAACGTCCATCAAAGGAGAAACATATAAGAG CTATATTTTCAGCAATCTCAGCTACAAGACCTAGGGCCGATGTTGCCTATTGCATCCACGCACTTGCAAGGCGATTGTCA AGGACACATAACTGGGCGGTTGCATTGAAAACTTTAGTTGTGATTCACCGTGCTTTGAGGGAAGTGGATCCCACATTTCA TGAAGAGCTCATTAATTATGGGAGAAGTCGAAGCCATATGCTCAACATGTCTCATTTTAAAGATGATTCCAGTCCAAACG CATGGGATTATTCTGCATGGGTCCGCACTTACGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTAT GACATTGAAGCAGACCGTCCCAGGACCAAAGATTTGGATACTGCGGAATTGCTAGAGCAGTTGCCATCTTTACAACAACT TCTATATCGAGTTATCGGTTGCCAGCCACAAGGGGCAGCTATAAATAACTTCATCATTCAGTTGGCACTCTCAATGGTTG CTTCGGAAAGCATTAAAATTTATCAGGCTATCAGCGATGGAACTGCTAATATGGTTGATAAGTTTTTTGAGATGAATCGC CAAGATGCTTTGAAAGCTATTGATATTTACAGAAGGGTTGGCCAGCAGGCTGAAAGATTGTCAGAGTTTTATGAAATATG CCGTAATCTTGATATTGGACGTGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTTCATCCTTTCTGCAAGCCATGGAAG AGTATGTCAAAGATGCTCCTCAGGGATCAATAGCTCGCAAGAACCAGGCCGCAGACAACAAAATTGCCTCTCCAACGGAA GTTTTGGCTATTGAATACAAAGAGTCTCCAGAAAGGCAGGAGGACCATTCACCCTCACCCAGTCCACCTCCGCCTTCTGA ACCTGTGAAAGTTGAAGTACCACCAGTACAACCACCACCTGATTTATTGAATTTGGATGATCCTGTTCCAGCTGCAGCAG AGTTGGAAGAGAAGAATGCCTTGGCTTTAGCCATTGTTTCTGTTGCTGATCAACAACCTACCGCTGTTTCAAATCACGCA AATGGAGTCACAGGATGGGAATTGGCACTTGTCACGGCTCCTAGTTCGAATGAGAATGCTACAACAGCTAGCAAACTGGC TGGAGGCTTTGACAAGCTTACACTAGACAGCCTATATGATGATGCACTCAGGCGAACCAACCAAAATGTCAGCTATAATC CATGGGAGCCGGCACCAGCAGGAGCCACGATGCAGCCGACGATGCACGATCCATTTTTCGCCTCTAATGCAATGGCTGCT CCACATTCTGTTCAGATGGCAGCCATGTCCAACCAGCAGCAGGCTTTCATGTATCAACAGCAGCAGCAGCAGCAGCAAAT GATGATGATGCCGCCTCAACAGCCGGCGGCAAATCCTTTTGGAAATGCTTATGGAGGAGCTACCGTTCACCCCTATGGAT CAGGTATGCCTGTGCAGTCGTACAATCCATATACAGGCCTCATCTAG
Protein sequence (LotjaGi4g1v0275800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGGNSIRKALGALKDTTTVSLAKVNSDYKELDIAIVRATNHVERPSKEKHIRAIFSAISATRPRADVAYCIHALARRLS RTHNWAVALKTLVVIHRALREVDPTFHEELINYGRSRSHMLNMSHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKY DIEADRPRTKDLDTAELLEQLPSLQQLLYRVIGCQPQGAAINNFIIQLALSMVASESIKIYQAISDGTANMVDKFFEMNR QDALKAIDIYRRVGQQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFLQAMEEYVKDAPQGSIARKNQAADNKIASPTE VLAIEYKESPERQEDHSPSPSPPPPSEPVKVEVPPVQPPPDLLNLDDPVPAAAELEEKNALALAIVSVADQQPTAVSNHA NGVTGWELALVTAPSSNENATTASKLAGGFDKLTLDSLYDDALRRTNQNVSYNPWEPAPAGATMQPTMHDPFFASNAMAA PHSVQMAAMSNQQQAFMYQQQQQQQQMMMMPPQQPAANPFGNAYGGATVHPYGSGMPVQSYNPYTGLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 544 | 541 | 8.4E-294 | – | |
| PANTHER | 4 | 544 | 541 | 8.4E-294 | – | |
| Gene3D | 5 | 162 | 158 | 9.5E-51 | ||
| ProSiteProfiles | 24 | 162 | 139 | 33.075 | ||
| SMART | 30 | 162 | 133 | 7.4E-38 | ||
| Pfam | 31 | 298 | 268 | 8.6E-89 | ||
| SUPERFAMILY | 31 | 163 | 133 | 2.24E-32 | ||
| CDD | 32 | 155 | 124 | 5.21151E-61 | – | |
| Gene3D | 163 | 309 | 147 | 1.8E-41 | ||
| SUPERFAMILY | 167 | 298 | 132 | 1.96E-43 | – | |
| MobiDBLite | 329 | 359 | 31 | - | – | |
| MobiDBLite | 336 | 359 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
| Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
| Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
| Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi4g1v0275800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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