Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0280800 |
| Transcript ID | LotjaGi4g1v0280800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium uptake protein 1; TAIR: AT4G32060.1 calcium-binding EF hand family protein; Swiss-Prot: sp|Q9SZ45|MICU_ARATH Calcium uptake protein, mitochondrial; TrEMBL-Plants: tr|K7M068|K7M068_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0280800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65178332..65181456) extracted from Lotus japonicus Gifu genome v1.2.
AAATTCAATGGCTCTTTGAGAAATCAAATCACAACCACAGACCAACTTAGCAACTTACAATCTGAGTCAAACCACATATT CCCCGCTCCTTCCGTTGCATCTGAGTCAATGCCATATGCTGTGAATGAATAATAATCAATGTTCCATCCTTCTTCAACCC TTTCTCTTTAGTTACAACCTCAAATTCTACCTCCAACTCAATTGTATTGAGTGAGTAACATTGTATTTGTGTATGTATAC GTACATGCATTCCTCTGTGCTTGTCTCTATACATACATTGTTTTCCTTGTTTCACAAATAAACCATAGCATGTTTTCTTA TGGCAGAAGTATTCAACTGTGTCTACGGCATAACATAAGGCCGTTGTGCACCCAATCAAAACGCTCCACCACGCCGTCGT CATCTTCGTTGAGTTCCTTTGGTGGGTTCGGACATAATGGTGACAACAATTTGGAGTGGTTTCTTAGATCAATCACTTCT GGGGTTGTGGTTGTTGGCTCCACCTTAGGCTATTGGTATTGGTCTTCTTTATCTTCTCCAGCATTCGCTGATTATAATGC AACTGAGGAACAGCTCCAACAAAATTCCCAAAACAGATCCAAGTTCCTCTTTAATGGTAACTTAATGCACCTATTGCCAG TGGATTGAAACCATTTATGACACATGTTTGAATATGTACATTGATTAAAATTGCATTCACTTGAATTGATGATAAGTTAC ACTGATTATGTTATTTTCATGATCTTCAGTTGCAATGCCAAATATTTTCTTCCTAAATTGGCCTTTAATTCATGATCATA GGTATTATCATTGGATAAATAATAGACTCACTAGCCTGTTAGGATTGGACAAAACATGATGGATATATATATATATATAT ATATATATGTGAGATTGGTGTATTTTAATTGTTAAATTTATTTGCTTTGGCGCTAACACTTGGATTTCTTGTGTTTCTCT TATGCTGCAGATGGTTATAGAAGAAGAGTGTTCTTCAATTATGAGAAACGCATTCGCTTACAGAGCCCTCCTGAAAAGGT GATTAATCTTGTTAACATGAATTTGTATAATGGTCAGCTATGTTGTTTTTGTTTCTTTGGATTAAAAACCAGTATCATAC TCCAGGTTTTCGAGTACTTTGCAACGGTTCGAACCCCTAGCGGTGAGGTTTTCATGACACCTGCAGATTTGATGCGTGCC ATTGTTCCTGTCTTTCCTCCTTCTGAATCAAACCGAGTTAGAGAGGGTTTTCTAAGAGGGGAGCAGGTTCCTGGCCAGTT ACAGTGTGAACCTTCAGATTTTTTCATGCTCTTTGACACCAACAGTGATGGACTCATTTCTTTTCCAGAGTGAGTAATGA ATATTTATAGTCTCTTCTATTTGCTTTAACTATGAACCATATTTGTTCAGAGCTCAAGGGCTATGTAATGTTAAATAATA TAACCTCCTCTTTCTTGACACCAGGTACATCTTTTTTGTAACACTCCTCAGCATCCCAGAGTCAAGCTTTTCAGTGGCTT TTAAAATGTTTGATATCGACAATAACGGGGAAATAGACAAGCAAGAATTCAAGAAAGTGATGGCGTTGATGCGATCTCAG AACAGACAAGGAGCTAACCACAGAGATGGACGGCGCCTAGGTGTGAAATCTTCAATAGAAAATGGGGGTCTCTTGGAGTA TTTTTTTGGCAAAGATGGAAATGCTTGCTTGCAACATGGAAGATTTGTTGAGTTCTTAAGACACTTGCATGATGAGGTAT GTCCTCCCAATCTAATGATTTTGCAGCACATCCTTCTATGATCAACAACATTTAGGTGACAAGATAATGTTTTAATTTGC AGATCTTGAGATTAGAGTTTTCCCATTATGATTACAATAAAAAAGGGACCATTTCAGCCAAAGATTTTGCCCTGTCCCTG GTTGCATCTGCAGACATCAATCACATAAACAAACTGTTAGATAGAGTTGAAGAATTAAGCAGTGACCAGCACCTAAGAGA TATAAGAATTACATATGAGGAATTTCAAGCCTTTGCAGAACTGCGGAAGAAGTTGCAATCCTTCTCTCTGGCCTTATTCA GTTATGGAAAAATTAATGGGGTGTTGACAAAGAATGATTTTCAGAGAGCAGCATCTCAGGTACTAATAATATATCCATAT GCTATAAAATAAATGTGCAGAAGTAAGCTATTCACTAATTTTAATTCAGTAAAAACATCTTATGGTATCATGTTATATTT AATGCAGGTATGTGGCATCTGTGTTACAGATAAAGTGGTTGACATAATATTTCATGTGTTTGATGCTAACCGTGATGGAA ACTTAAGTGCAAGCGAGTTTGTGAGAGTGATACAGAGAAGAGAAAATAAGTCATCAGGTGTTGGCTTTGGAAGTTTGATA TCTTGCTGTATGAATTGTGTCAGTAATTTGTCATCATCTAAACTTCAATTATGATGGGACACATTCAGAAGCATCCATCT TCACCACTCAGAAATTAAAGCGAGGGTGTGATATGCAGATTTTGGTTCCCAGCCGAGGCCAAACGGGTCATCCTACATTC ACACAATCAAGGAATTTGATCCGTTCAATCAAAATCCGGCTCATATATTTCATCAAGATCGAACAACAGAAATAAGCTTA AAATGTGTGCCGTTCAATCAAATGACTTAAATTTCCTGTCTGCTTGAATTCCTTACATAAGGGAATCCAAATTCACATGC ATCTTCAGCATGATGCGCCTGCTGTCTACTCAGATATGTACAGATTGTTGGGGTTAAATCTTCTTGTGAGGATACCTGTC ATTCCGGCTGCCTTAAAAATATTCTTGCTTCCCATAATTTTTGGTTTCTTGGGCCATCTTACCCCAAGTGTTAATGTTTG TAATATAAAATTTAACCTATAGTGGCTAGATTAAGTCTGAAAATTCTAATTACATCTCATTCTTTGTAACTTGGGAACAT TCTAAATATTTTAGCCCCAGATGAATGAGTGTGTAAGTGACATTAATTCATTGGACTTTTCGAAAAAAAAGTTGCAGAAA GAAGCTCAAAAGAAAGGTTTAATTATTCAAGGACAAAAATAGTATTAAGATCAGTTGGTAAAACATTCATGTTTCAAAAT CCTAG
CDS sequence (LotjaGi4g1v0280800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTCTTATGGCAGAAGTATTCAACTGTGTCTACGGCATAACATAAGGCCGTTGTGCACCCAATCAAAACGCTCCAC CACGCCGTCGTCATCTTCGTTGAGTTCCTTTGGTGGGTTCGGACATAATGGTGACAACAATTTGGAGTGGTTTCTTAGAT CAATCACTTCTGGGGTTGTGGTTGTTGGCTCCACCTTAGGCTATTGGTATTGGTCTTCTTTATCTTCTCCAGCATTCGCT GATTATAATGCAACTGAGGAACAGCTCCAACAAAATTCCCAAAACAGATCCAAGTTCCTCTTTAATGATGGTTATAGAAG AAGAGTGTTCTTCAATTATGAGAAACGCATTCGCTTACAGAGCCCTCCTGAAAAGGTGATTAATCTTGTTAACATGAATT TGTATAATGGTCAGCTATGTTGTTTTTGTTTCTTTGGATTAAAAACCAGTATCATACTCCAGGTTTTCGAGTACTTTGCA ACGGTTCGAACCCCTAGCGGTGAGGTTTTCATGACACCTGCAGATTTGATGCGTGCCATTGTTCCTGTCTTTCCTCCTTC TGAATCAAACCGAGTTAGAGAGGGTTTTCTAAGAGGGGAGCAGGTTCCTGGCCAGTTACAGTGTGAACCTTCAGATTTTT TCATGCTCTTTGACACCAACAGTGATGGACTCATTTCTTTTCCAGAGTACATCTTTTTTGTAACACTCCTCAGCATCCCA GAGTCAAGCTTTTCAGTGGCTTTTAAAATGTTTGATATCGACAATAACGGGGAAATAGACAAGCAAGAATTCAAGAAAGT GATGGCGTTGATGCGATCTCAGAACAGACAAGGAGCTAACCACAGAGATGGACGGCGCCTAGGTGTGAAATCTTCAATAG AAAATGGGGGTCTCTTGGAGTATTTTTTTGGCAAAGATGGAAATGCTTGCTTGCAACATGGAAGATTTGTTGAGTTCTTA AGACACTTGCATGATGAGATCTTGAGATTAGAGTTTTCCCATTATGATTACAATAAAAAAGGGACCATTTCAGCCAAAGA TTTTGCCCTGTCCCTGGTTGCATCTGCAGACATCAATCACATAAACAAACTGTTAGATAGAGTTGAAGAATTAAGCAGTG ACCAGCACCTAAGAGATATAAGAATTACATATGAGGAATTTCAAGCCTTTGCAGAACTGCGGAAGAAGTTGCAATCCTTC TCTCTGGCCTTATTCAGTTATGGAAAAATTAATGGGGTGTTGACAAAGAATGATTTTCAGAGAGCAGCATCTCAGGTACT AATAATATATCCATATGCTATAAAATAA
Protein sequence (LotjaGi4g1v0280800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSYGRSIQLCLRHNIRPLCTQSKRSTTPSSSSLSSFGGFGHNGDNNLEWFLRSITSGVVVVGSTLGYWYWSSLSSPAFA DYNATEEQLQQNSQNRSKFLFNDGYRRRVFFNYEKRIRLQSPPEKVINLVNMNLYNGQLCCFCFFGLKTSIILQVFEYFA TVRTPSGEVFMTPADLMRAIVPVFPPSESNRVREGFLRGEQVPGQLQCEPSDFFMLFDTNSDGLISFPEYIFFVTLLSIP ESSFSVAFKMFDIDNNGEIDKQEFKKVMALMRSQNRQGANHRDGRRLGVKSSIENGGLLEYFFGKDGNACLQHGRFVEFL RHLHDEILRLEFSHYDYNKKGTISAKDFALSLVASADINHINKLLDRVEELSSDQHLRDIRITYEEFQAFAELRKKLQSF SLALFSYGKINGVLTKNDFQRAASQVLIIYPYAIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 49 | 49 | - | – | |
| PANTHER | 22 | 128 | 107 | 4.1E-174 | – | |
| PANTHER | 22 | 128 | 107 | 4.1E-174 | ||
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 435 | 364 | - | – | |
| Gene3D | 146 | 290 | 145 | 6.5E-15 | – | |
| PANTHER | 154 | 427 | 274 | 4.1E-174 | – | |
| PANTHER | 154 | 427 | 274 | 4.1E-174 | ||
| SUPERFAMILY | 156 | 350 | 195 | 2.58E-19 | ||
| SMART | 209 | 237 | 29 | 0.03 | ||
| ProSiteProfiles | 212 | 237 | 26 | 6.173 | ||
| Pfam | 212 | 230 | 19 | 0.01 | ||
| CDD | 214 | 269 | 56 | 1.45859E-10 | ||
| ProSiteProfiles | 239 | 274 | 36 | 12.895 | ||
| SMART | 243 | 271 | 29 | 9.6E-6 | ||
| Pfam | 247 | 270 | 24 | 4.1E-7 | ||
| ProSitePatterns | 252 | 264 | 13 | - | ||
| SUPERFAMILY | 291 | 392 | 102 | 5.44E-8 | ||
| Gene3D | 298 | 406 | 109 | 5.1E-7 | – | |
| ProSiteProfiles | 323 | 358 | 36 | 8.209 | ||
| SMART | 327 | 355 | 29 | 32.0 | ||
| ProSiteProfiles | 378 | 397 | 20 | 5.196 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Mitochondrial calcium ion transmembrane transport | The process in which a calcium ion (Ca2+) is transported across a mitochondrial membrane, into or out of the mitochondrion. |
Expression pattern of LotjaGi4g1v0280800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…