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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0286400 |
Transcript ID | LotjaGi4g1v0286400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein RTF2-like protein; TAIR: AT5G58020.1 RTF2 RING-finger protein; Swiss-Prot: sp|A5GFW7|RTF2_PIG Protein RTF2 homolog; TrEMBL-Plants: tr|I3SA36|I3SA36_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0286400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65844202..65847894) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAATCGCAAATCAGGCCCAGCCCATCTAACTGAAGCAATCTTCAACATCGGTTCCCTACAGATGTCAAACTAGGTTC CCAAATCCTCAATCGTCAGAACAGAACTCCTTCAATTTCAATCTCCGATTTCACAATCACACTTCACAAACCCTAGAATC AAATTCCAAAATGAATCGCAAGAAATCGCTCCAAATCTTCATCCAATCGCCGGACCTCCATCAAATCCGCCACGAATCCG TCACCGGCGATCAAACCCTCGCCGACCTGAAACGCTCTCTCTTCCCGGAATCAAACCACCGATCCTCGTTCTACTTCACC CTCCATGGAAAACCCCTCCCCGACGATACCCCTCTCTCGATCCCCCAAATCGCCCCTCTCTCCACCCTCGTTCTTCAATC CCGCCTCCGCGGCGGCGGAGGCGATGGCGGCGCGACGGGCGCCGAGTCCCGCGACTGCTACCTGAAGATGTACTCGGAGA AGAAGCCGGACAAGGTGGACCCCAACGAGCAGAGGCTGTCAAAGTGGCAGAACTGCGCGCTCTCGAACGAGCCCTTGAGG GAACCCTGCGTGATCGACAAGCTTGGGAATATCTTCAACAAGGAAGCGCTGGTGGAGGCTTTGCTCGGGAAGAAGCTTCC CAAGGAGTTTGGGTATATCAAGGGTTTGAAGGATATGATCACGATTCGGCTTTCTTCGGTTCCTAGAGCTGAAGATGGGG CTAAGTTTCAGTGTCCTATTTCGGGGCTTGAATTGAATGGGAAGTATAGGTTTTTTGCTCTGAGGAATTGTGGGCATGTT TTGAGTGCAAAGGCGTTGAAGGAAGTTCGGTCGTCGAGTTGTTTGGTTTGCCATGAGGATTATGGGGAGGAGGATAAGGT TGTGATTAATGGGAATGAAGATGAGGTTGCTGCTTTGAGGGAGAGGATGGAGATGGAGAAGACCAGGGTGAGGGAGGGGA AGAAGAATAAGAAGGTGAAGGGTGAGAGTTTGGAAGGGTCAAGGTTGAGTGGTACCAAGCATGTTATGGCTGCTGTGGAG AAGGCTTCAGCTAAAGTGGAAGTAAATGGGAAGGTTTCTAATGGTGGTGGTGCTGCGAAGCGTTTCAAGGCAATTGATGT GGCCCCAGCACATGCTACCAAGGAAGTCTATGCCTCCATATTCACTTCATCCAGAAAATCTGATTTTAAAGAAACATACT CTTGCAGATCTCTACCACTTGGAAGAAACTGATTGCGGTATGTATGCAAGTGTGTACTGTTACATTGAACATTGAATTTT AGTTCATGATTATAGAAGGGATTGGCTTTTCCTGTGATCTTGTGTAGTATTGTTATAGACATAGTTACTTGTTTTGTTCC TATCATATATCATCACTAATCTATGTTACTCTAGAAGGGGTTTTGTGAATAATGTCTAGTGTTTGGCCTCTTTTTCAAGA TGTAGATTTTAGTCATTTCACTTGTTCTATTTGAAGTTTCACCCTGGAAACCATGTTTTTTTAAAGGTTTACGCTGTATT TAGTTCTCCTTTCGCTTTTTCCCTTATAAGTTGTTGGGCAAGTTTAGAACAGAACTTGTTTGCTTGTATGAGACATGTTA TGGTCCATCTGCTATATTTTTATTCTGATTATCAATAGTTATGCAGGTTGGTCGTGTCCATAACCTAGAACTAGTTTGAA GCATGTAATTCAACCTTAATTTTTAGTCTGAACTTATCTTATACTTGAGGAAGCTACAAATAGGTAAGGTAGTTGCCAGC TTCAACTATTCCCTAGGAAAATGAGTATATAGTGAAGTCTGAACTGAACAAAGTATATAATGTAGCCAAGAAGTTATGCT CTGTATTGTCTCCAAAATACAAAAACTAAGTGCTTTAATGGTCACATTTACTCTATGTGCTTAAGTCACCTCATTTACAT CATTTGATTAAAAACTAAAAAATATATGGCATGGAATACTTCTTGATGCTTCTGCATTTTTGTTTCTTTATCTGTAATTT GACCAATATAATATAAATTAACATGACATTTATCTGTAATATTTGATATTTTAAGGTTTTGTAATTCGCAAACTAAGTGT TTATGAAATTTATCTGTAATATTTGATATTTAAAGGTTTTGTAATTTGCAAACTAATTGTTTTTCTCTAGTCACTCCTAT CACCACATGTGCCATCATCACCGCCACTTCCTTTTAATGCAATATTTGGCCTAGAAAAAAAAATCACTGCCACTTCCTAC TGCCCATGTTCCAAAACTCTCATCCACCGAACTTACCTCTTCCTCCCCCTTTCATGGTCGATCATCTCTTGCCCAAAACC TCTCTTCACCAAGATCACCCACCTCCCTCTCCTAAGCACAACCTCTCTTCCAAACATACATTTCATTAGAATACCTCTCC TTGCCTATTCGGGAAAACTGCATCAAAAGTACGTACCTAAACCTCCATCAACCTCCCAAACCAACTCTCCTTTGTCATAA TCTCCGCCTCTGGAAAAGGGAAAGCTTCTTCACGGTTCAGATTAGTGAGGGAATGTATGGTTTAAGCATTTCGTTGAACA CTTGCTCGATGAGGTTCAAAACAACAATGGCCTCTAAAAGTACTGCAACATAACTCACAATTATTTGTTGGTGTTCTTTG TTCTGCTACTTTCATCTTCAAATTCATTAGACTTGATTCCAGTTCCATGTGATTAGCCGGAGCAGTTGCACTCAGTGTAG TTAATGAAAAGGAGGAGACTCTCTAGAAAGTGTACTTGTGTGGCAGTGGTGCGAATGGTTCAACGGCCGCGACGTCAATA TCATTCATAATCAATTTTGCACCATCATCACTTTTGACCTAAAATGGACCAGCAACACCACCTTCTTCTTTTAGTTTAAC CCCTTTGGCTATAGTTGTGAGGTTATTCACGTTAATGTAGGTATCCTTGCCCCAATTGGCTCGATAATCTTGCCTATTTG GGTGAACGTCCTGCAATTTAGTCAGAGCTTTGTCACGCCTCTCCTTCCCACCTCACCTCCATCCCTTCTTCGTCAAACCT CTAAGGAGCCATTGTTGTGTGCGGTGGAGGGAAGTGATTGGTTCTAGTGGTTTCATGGAGGAAGTCTGATATGGATATGT GGCTAAAGATTGTTGTGTCTGGGCTAAGTTTGTGGTAGTGCTGTTGTTGGTAACATTGACGCGATGGCCGAAAGTGATTC TGATGAGAACAAATTATAAATACTTCACAATTGAGATCAAAGTATAAATACTTCACAACTGAATGACTCTTTTACACATT TAAAAACCTTTAAATGTTGGTGAAATCTCTATATTGAATATTGTTTCATTCACACTTCATAAAAAGTGGGAAAGAGGTGG AGAGAAGAGAGGGATAGTAAGAAAAAAAAATTAAGAGATATAATATATGATATGATTGAAAGAGAAGAGAGATAAATTGA TACTAAGCGGAGTGCATGTGAAGTGAGAGTGTGGATGAATCACTTTTTGTTGTTTGTTTTGATTTTAAATATTATTAGAT GATCTATTGAAATAAAATAAAAAGGGTTATATATAAAACATCAAAAGAAAATGAAGTTAAAATCAGAATTCAAATAAAAA ATAAATTCTTCATCACTTCGCTTAAATTTTGACTTTTAAGAATTAGCTTAAAAAATCACAACAATTTTTATTGCATTCCT ATAAATTACTCGA
CDS sequence (LotjaGi4g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGCAAGAAATCGCTCCAAATCTTCATCCAATCGCCGGACCTCCATCAAATCCGCCACGAATCCGTCACCGGCGA TCAAACCCTCGCCGACCTGAAACGCTCTCTCTTCCCGGAATCAAACCACCGATCCTCGTTCTACTTCACCCTCCATGGAA AACCCCTCCCCGACGATACCCCTCTCTCGATCCCCCAAATCGCCCCTCTCTCCACCCTCGTTCTTCAATCCCGCCTCCGC GGCGGCGGAGGCGATGGCGGCGCGACGGGCGCCGAGTCCCGCGACTGCTACCTGAAGATGTACTCGGAGAAGAAGCCGGA CAAGGTGGACCCCAACGAGCAGAGGCTGTCAAAGTGGCAGAACTGCGCGCTCTCGAACGAGCCCTTGAGGGAACCCTGCG TGATCGACAAGCTTGGGAATATCTTCAACAAGGAAGCGCTGGTGGAGGCTTTGCTCGGGAAGAAGCTTCCCAAGGAGTTT GGGTATATCAAGGGTTTGAAGGATATGATCACGATTCGGCTTTCTTCGGTTCCTAGAGCTGAAGATGGGGCTAAGTTTCA GTGTCCTATTTCGGGGCTTGAATTGAATGGGAAGTATAGGTTTTTTGCTCTGAGGAATTGTGGGCATGTTTTGAGTGCAA AGGCGTTGAAGGAAGTTCGGTCGTCGAGTTGTTTGGTTTGCCATGAGGATTATGGGGAGGAGGATAAGGTTGTGATTAAT GGGAATGAAGATGAGGTTGCTGCTTTGAGGGAGAGGATGGAGATGGAGAAGACCAGGGTGAGGGAGGGGAAGAAGAATAA GAAGGTGAAGGGTGAGAGTTTGGAAGGGTCAAGGTTGAGTGGTACCAAGCATGTTATGGCTGCTGTGGAGAAGGCTTCAG CTAAAGTGGAAGTAAATGGGAAGGTTTCTAATGGTGGTGGTGCTGCGAAGCGTTTCAAGGCAATTGATGTGGCCCCAGCA CATGCTACCAAGGAAGTCTATGCCTCCATATTCACTTCATCCAGAAAATCTGATTTTAAAGAAACATACTCTTGCAGATC TCTACCACTTGGAAGAAACTGA
Protein sequence (LotjaGi4g1v0286400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRKKSLQIFIQSPDLHQIRHESVTGDQTLADLKRSLFPESNHRSSFYFTLHGKPLPDDTPLSIPQIAPLSTLVLQSRLR GGGGDGGATGAESRDCYLKMYSEKKPDKVDPNEQRLSKWQNCALSNEPLREPCVIDKLGNIFNKEALVEALLGKKLPKEF GYIKGLKDMITIRLSSVPRAEDGAKFQCPISGLELNGKYRFFALRNCGHVLSAKALKEVRSSSCLVCHEDYGEEDKVVIN GNEDEVAALRERMEMEKTRVREGKKNKKVKGESLEGSRLSGTKHVMAAVEKASAKVEVNGKVSNGGGAAKRFKAIDVAPA HATKEVYASIFTSSRKSDFKETYSCRSLPLGRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 6 | 83 | 78 | 3.55E-5 | ||
CDD | 7 | 80 | 74 | 2.66711E-5 | – | |
ProSiteProfiles | 7 | 82 | 76 | 9.374 | ||
PANTHER | 82 | 353 | 272 | 4.8E-97 | ||
Pfam | 82 | 337 | 256 | 2.5E-72 | ||
CDD | 186 | 231 | 46 | 2.45291E-24 | – | |
Coils | 239 | 259 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Mitotic DNA replication termination | Any DNA replication termination involved in mitotic cell cycle DNA replication. |
Expression pattern of LotjaGi4g1v0286400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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