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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0288900 |
| Transcript ID | LotjaGi4g1v0288900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT2G24030.1 zinc ion binding / nucleic acid binding protein; Swiss-Prot: sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2; TrEMBL-Plants: tr|G7JFL6|G7JFL6_MEDTR C2H2 type zf-met: zinc-finger protein; Found in the gene: LotjaGi4g1v0288900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66113736..66117906) extracted from Lotus japonicus Gifu genome v1.2.
TTTATTTTGATTTTCTCTATCTATAGAATTTGCTAAATTCTCTCTCAATATTCGATTACCACATAAAGCGACCATAGAAT CAAATACAAAACCATTCCAAACCAAAAAAATTACAGAAAAATCCTATAAACCCTGGTTTCATTATCTCTCAATCATCATA TAAATCTCAGTAATCGTCATCATCATCATCATCGCTTTCTCACTGTTTACATAAATTTCAGTACTGTCAGAATCTCGATC ACTTCCCCTGTTTACCTGTGTGTAACAGAAAACAGAGTATTTTCTTGTTGCTTATTGTTTGTGAATTGTGATCATCATCA TCACCATTGTCTCTTAGGTTGCAAACTTCAACCGTGTTCTTGATTTTCTTCCATGGAGAACGAGTTCAAGTATCGTGCTA TTGACAAGAGGCCACAACCACAACCACCGCCGCTGCCACCGCCACAGCAATCGGCGTATCCTCATTCTGCCGCCACCTAC TTCTCTGAGGGGCCATTGGGAGGTGAGAATTGAAATTTGAACACCCATTTGCATGTTTCTACAGAAAAAAACAATCTTTT CTGACATTTATTGATGTTTTTTTTTTCAGGGGAGGGTGGTTATGCGAGGATGGTTCCTCCGACGATGAGTGTGAGAGAGG AGATTGAGAGAGCGGTGGAGAAGGAGCGGATACGGCGGGAGATAATCACGGAGGAGATGGCGCGGGCTCGGCGGCGGGAG CTGGAGGAGGAGGTGAGGAGGGAGTTGGGGATTCCAATGCAGAGGAGTTTGGTGCCGCCGCCGCCGCCGCCGCAACAGAG GTTTTTGGTTGTTGAGAGAGTGAAACTTGCAATAGAAGACATGCCAGTGATGCCACCACCACAACCTCGAATTTTGGACC TTGCTGAAATCGAAACTGCTAAACTTCCAGATCAATATAGGGTCAGCTTCTACCTTTTTCCAGTGTTATGTTTGATTGTC TATTTGTCTGTTAGCAATTCCTTGTTTTTTTTTGTTTCTTTGTTATTTTTGCCAATTTGTCTTATGTGGTCCCTGAATTC TTTGGTTGGAGGTCCTTTTTGGGGGTGAAAAGACTTCATTGCCATTGGTATGAGCATTTAGCATCAATTGTTGTGGGGAT GGACCTTTGCAATTTAATGGCTTTTTTTTGTAAGGGTTGTTTGTTTCATGAAAACACAGGATTGTAGAGCTTATGAATGA ATATTTTCACATTTGTTACAAAGTTGAAAATTCTGATTTTGGGGTATTTTTGGCCAGTTCTTCCATTTGATGCTGATGAA ATGTGTTGGGAATCTCACATTCTCACTAGGTACCCTGCTAAAAGTGATTTAATGTTGGGCTCTTTGTGTGCAAGGGTTAA AATTGATTCTGCAATGTTTGAATCAATTCTTATGTTTTTGGATGTTTCTTTCACAATTTGTAGGTTTTCTCTACGATGTG AGAGCAAATCCTAGCTTCTGTGATGGACATAACCAATTGTATAATTTCACACCCGGGTTTTACAAAATTATTCTACTGAA AGTAGTTTTCTAATAATAAACCACTTCACCTTTTCCTAAAATGATTTTTACTATCTACAATCACTTATGCAACTATACAC TTATACTAGTAAAATGTTTGACATTGCTAATTTGTTATTCTTGTTTCAGGAGCGGGTGAATCTGCGTCTGAACCCAAAAT TAAACCAGGTTGCCATTGAGGATATGCCTCAACCTCGTTTTATGGATATTACTGAAATCAAACCAGCAAATAACCATGAT GAAGTGATCCAGCTGGTTAGTTTCTACTTTCTAGTGTTATGTTTGTTTATCCTTTATTTTATATTTTTTTTCTCTGTTTC TTTATTATTTTAGCCATATTTGTCTTGTTAAGTGCTTCCATGTTGTTTGTATTATGTGCCCCCTGACCTTGTGTCTTGGT CTGAGGTCTTTCTAGCTTCTGTTTTCCTTTGCTTGTGGGTGGGGTTTAAAAGTTAAAATATGGTGTCTGAAAAAATATTG TCATTGGTATGCACATTTAGCAGCAATTGCTGTGGGGATGGGTTCCACATTTTGATTACTTTTCTAGGAAAAAGCTCAAT ACCTTTTGTCTTTGAAGCTGCACTTATTCCCTGCTAAAAGTGATTTTTATTTGTAAAATGTTCTGACATTGTCAATTAGA TATGACTTGAATAAGATAGGAAGAAAATAACACAACTGGCTGCATCATAACAACTTTAAGATGGGGTTATTTTAGTTGCA AACTGGTAATTCTCCTGTGAATCTTGTATTTGTAAATTGTAAGCTCATCTGCATATGACTGTAGAACTTTAACTTGATTG ATCACACATTTTAAGTTCTTTTTATTTGAATTTTTTTTTTATTGGGCTTGTCTCATAGCTACTCTAGTGGGGAATGATAT AGTGAAGTATATGAAGGAAATATTTGTAGTATGGAATACTATATCTGTTATATTTTTGTATCTGGGAGTGGAAATGCAGT GTTGAATAATGTCTGTTTGCAATAAATTTCCAAAATATGCAGCTATTTTATATCAATCCTAATATTTCTTTCTTATACCC CACTATCACTATGTTCATACTTTAAGGGCCCTAAGCAAATCTCCGTTTTGATATAACTATGCTGATTTTATGCTGTCAAA ATTTCTTTGATTAAGTTGCTTCTCCTATTTGTTTGGCTAGCCATATAAAATTTCTTCCAGCTTACCTTACCATAACTTCA CTCGCAATGAAACAATGTTGTGTTCTCACCATATGTATGTCTTATTTGCATATTAGCATATCATATTTTGACTGAGTTTC CCACTGCAGGCTAAGCCAAACCCTGGTGTTTATGATGCAAAACGAAAAGCAGCGGAACCCGCTGTTAATGAGACTCAATT TGGTTTGATGAAAAAGCCCAAGAAGGCGTGGAGATGCGAGCTATGTGGGGTCAGCACCACAGATGAGAGGGGTTTGAACA TGCACCTTAGCGGTAAGAAGCACAAGGCCAAGGAAGCTCAGAGAGCTGAGAAGATTGGTAAGAGCACAAGTTCATCACTG TCACCAATGAAAAGTAATATGAATGTGAAGTCTATAGAAACTGAAACTATCATTACCACAACTTCAGGGTTGGATGCAAA ACCAGATATCCAGACACATCATGCCTTGGTAGAGGGAGGCATGACTCAGAACAATGTTGATGCAGTGGAAGGTGAAACTA TCATTACCACAACTTCAGGGTTGGATGCAAAACCAGATATCCAGACACATCTCATTACCGCAACTCTAGGGTTCGATGCA AAACCAGATATCCAGACACATCATGCCTTGGTAGTGGGAGGCATGACTCAGAACAATGTTGATGCAGTGGAAGGTGAAAC TATCATTTCCACAACTTCAGGGTTGGATGCAAAACCAGACATCCAGACACATCTCATTACCGCAACTCTAGGGTTGGATG CAAAACCAGATATCCAGACACATCATGCCTTGGTAGTTGGAGGCATGACTCAGAACAATGTTGATGCAGTGGAAGGTGCA AAAGAGGAGCAAGCAGTTCAGAAAAGCCAGAGCATGGGTGTTTCTGAGATCAAAGAAGTATCAACTAAGGAAGCTGGGAA AACAAACGCATTTGTAGGGAGGAAGAGGAAGTTCTGGTGTGACATTTGTGGAATTAGTACTCTGTCTCAAGGTGTGATGG AAAACCACAAAAGAGGGCGAAAACATCGGAGAAGAATGGAGAATACGATGAGTCAAAACAATGGGTGTGCCCCTCACACA TCATCTGCAGATAACTTTTCATGTTCTGAGAAAGTTCATCTAGTTGCTGGTTCAAAAGAAGATACAGTGGATGAAGGACT ATGAGCACATGCTAGGTGCTGCAAATACTGGACTTTACAAAATTACTTAAGATTGTTATCCATTGTGATTATCATGTAGT GTGTTGATCCTTTACTTATGTGACATTTTTAATCTGTTCTGGTAAGGGATGATAAGTAAGTGGCTTTAGTCTTTTCTTGT TTGAACTCAGCTAAAGCTACTTTTATTTAGTTGCAGTGTTTGTCAAGTCATGATTTGTAGTATATTATGATGTTGTTTGG TCTTATTTTGGAGGGAAAAACTTTGTTTTTTTCCCCTTTTGTTTACTTGTAACATTTTCTCAAGTTCAATCAAGCAAAAC TGCAAAAGGAC
CDS sequence (LotjaGi4g1v0288900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACGAGTTCAAGTATCGTGCTATTGACAAGAGGCCACAACCACAACCACCGCCGCTGCCACCGCCACAGCAATC GGCGTATCCTCATTCTGCCGCCACCTACTTCTCTGAGGGGCCATTGGGAGGGGAGGGTGGTTATGCGAGGATGGTTCCTC CGACGATGAGTGTGAGAGAGGAGATTGAGAGAGCGGTGGAGAAGGAGCGGATACGGCGGGAGATAATCACGGAGGAGATG GCGCGGGCTCGGCGGCGGGAGCTGGAGGAGGAGGTGAGGAGGGAGTTGGGGATTCCAATGCAGAGGAGTTTGGTGCCGCC GCCGCCGCCGCCGCAACAGAGGTTTTTGGTTGTTGAGAGAGTGAAACTTGCAATAGAAGACATGCCAGTGATGCCACCAC CACAACCTCGAATTTTGGACCTTGCTGAAATCGAAACTGCTAAACTTCCAGATCAATATAGGGAGCGGGTGAATCTGCGT CTGAACCCAAAATTAAACCAGGTTGCCATTGAGGATATGCCTCAACCTCGTTTTATGGATATTACTGAAATCAAACCAGC AAATAACCATGATGAAGTGATCCAGCTGGCTAAGCCAAACCCTGGTGTTTATGATGCAAAACGAAAAGCAGCGGAACCCG CTGTTAATGAGACTCAATTTGGTTTGATGAAAAAGCCCAAGAAGGCGTGGAGATGCGAGCTATGTGGGGTCAGCACCACA GATGAGAGGGGTTTGAACATGCACCTTAGCGGTAAGAAGCACAAGGCCAAGGAAGCTCAGAGAGCTGAGAAGATTGGGTT GGATGCAAAACCAGATATCCAGACACATCATGCCTTGGTAGAGGGAGGCATGACTCAGAACAATGTTGATGCAGTGGAAG GTGAAACTATCATTACCACAACTTCAGGGTTGGATGCAAAACCAGATATCCAGACACATCTCATTACCGCAACTCTAGGG TTCGATGCAAAACCAGATATCCAGACACATCATGCCTTGGTAGTGGGAGGCATGACTCAGAACAATGTTGATGCAGTGGA AGGTGAAACTATCATTTCCACAACTTCAGGGTTGGATGCAAAACCAGACATCCAGACACATCTCATTACCGCAACTCTAG GGTTGGATGCAAAACCAGATATCCAGACACATCATGCCTTGGTAGTTGGAGGCATGACTCAGAACAATGTTGATGCAGTG GAAGGTGCAAAAGAGGAGCAAGCAGTTCAGAAAAGCCAGAGCATGGGTGTTTCTGAGATCAAAGAAGTATCAACTAAGGA AGCTGGGAAAACAAACGCATTTGTAGGGAGGAAGAGGAAGTTCTGGTGTGACATTTGTGGAATTAGTACTCTGTCTCAAG GTGTGATGGAAAACCACAAAAGAGGGCGAAAACATCGGAGAAGAATGGAGAATACGATGAGTCAAAACAATGGGTGTGCC CCTCACACATCATCTGCAGATAACTTTTCATGTTCTGAGAAAGTTCATCTAGTTGCTGGTTCAAAAGAAGATACAGTGGA TGAAGGACTATGA
Protein sequence (LotjaGi4g1v0288900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENEFKYRAIDKRPQPQPPPLPPPQQSAYPHSAATYFSEGPLGGEGGYARMVPPTMSVREEIERAVEKERIRREIITEEM ARARRRELEEEVRRELGIPMQRSLVPPPPPPQQRFLVVERVKLAIEDMPVMPPPQPRILDLAEIETAKLPDQYRERVNLR LNPKLNQVAIEDMPQPRFMDITEIKPANNHDEVIQLAKPNPGVYDAKRKAAEPAVNETQFGLMKKPKKAWRCELCGVSTT DERGLNMHLSGKKHKAKEAQRAEKIGLDAKPDIQTHHALVEGGMTQNNVDAVEGETIITTTSGLDAKPDIQTHLITATLG FDAKPDIQTHHALVVGGMTQNNVDAVEGETIISTTSGLDAKPDIQTHLITATLGLDAKPDIQTHHALVVGGMTQNNVDAV EGAKEEQAVQKSQSMGVSEIKEVSTKEAGKTNAFVGRKRKFWCDICGISTLSQGVMENHKRGRKHRRRMENTMSQNNGCA PHTSSADNFSCSEKVHLVAGSKEDTVDEGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 4 | 478 | 475 | 1.8E-61 | – | |
| PANTHER | 4 | 478 | 475 | 1.8E-61 | – | |
| MobiDBLite | 13 | 27 | 15 | - | – | |
| Coils | 59 | 86 | 28 | - | – | |
| SUPERFAMILY | 217 | 260 | 44 | 5.41E-9 | ||
| Gene3D | 222 | 267 | 46 | 1.9E-9 | – | |
| SMART | 227 | 261 | 35 | 0.0044 | ||
| Pfam | 230 | 254 | 25 | 9.4E-7 | – | |
| SMART | 230 | 254 | 25 | 0.29 | ||
| Gene3D | 434 | 478 | 45 | 2.0E-7 | – | |
| SUPERFAMILY | 437 | 471 | 35 | 1.33E-7 | ||
| SMART | 438 | 472 | 35 | 0.052 | ||
| SMART | 441 | 465 | 25 | 11.0 | ||
| Pfam | 441 | 465 | 25 | 1.2E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0288900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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