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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0294900 |
| Transcript ID | LotjaGi4g1v0294900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT4G30400.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13; TrEMBL-Plants: tr|V7CBT9|V7CBT9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0294900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66741623..66744380) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAAAACAAAAGAAAACGAGGTAACACAACACAACACTCCAACACAATTGTCTCCATCAAAACCACTTCTTCCTTCT ATTCTATTCCATTGTCCCTCTCTTCACCTCCCACCTTTCTGCTTCCAACCATGGCACCAAACAGTGTCTTCAAACACTCT GTGACTGTGATCCCATCTCCACTCGAGTAGAGTTGCAATCTTTTCTTCATTCTCTTCTGCCCCTGCAAAATGGGTAGAAA TTTCACTCAACAAGGAGACACCTTTCTACCTCCGTCAGAACAACCGCCATTTTTTCTCCCTCAATCTCAACCTTCACCAC CCACCACCACCGTTCGATCTGACAGCAGCAGCAGTTTCAGTTTCAACGACAAGGCCTTGAAGGTTAGTCCCAGCATACTC CTCATCATCATCATTCTCGCCATCGTTTTCTTCATCTCCGGTTTGCTCCACCTCCTCGTTAGATTCCTCTGGCGGCCACC GAGCAGAGAAACCGATGATTTGGACAGTGTCACCGCCCTTCAAGGCCAGTTACAGCAACTCTTCCACCTCCATGATGCTG GTGTTGACCAGTCTTTCATTGACACCCTCCCTGTTTTCCCTTTCAAAGCTATCATTGGGTTGAAGAACCCTTTTGACTGT GCTGTTTGTTTGTGTGAATTTGAACCAGAAGACAAGCTTAGATTGTTGCCGAAATGTAGCCATGCCTTTCACATGGAGTG TATTGACACATGGTTGTTGTCACATTCTACTTGTCCTCTTTGTAGAGCGAGTTTGCTACCTGAATTCTCTGCAAACAATA ACCGTTCCCCCATTGTTCTTGTTCTGGAATCTGGGAGTGATAGCTCAAGGGAGATTGTCCCTGAGGGTGGTGGTGCTATT GGAAGGACTAGTTCAGTTATGACTACACATTCTCGCCTTGGTTGCTGCGGTGAGAGCGAATTCGGATCAACGCGTGTCGA TTTACCTCGCAAATCGGGTGAATTAGCTGTAATTGAGAGTCCTGATTCAAATGTTGCAGTTGCAGGGGATGATGGTGTGG AGAAAGTGGTTACTGTGAAGCTGGGGAAGTACAGGAATGTGGATGGTGGTGAGGGAGGGGATGGTGAAGGAAGTAGCACT AAAAATGTAGATGCTAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCCTCATTGCAGGTACC TATTAAGAAAACCCCAATCAAGCCACAGTCAAATAAGAAGCTTGTTTTGCCTTTGACCCCAGGACACAAGCTTGCAATGT CAGAATGTGATTGTGAATCCAGGAGAGACTTCAAATTCTCAGGCTTGCATGCAACTAGAGTTGATCAGAATCTTGCTGGG GCTTCAAGTGCTTGTAGTGGAAATGGTGCTGCTATTGGAAAGAGCAGAAAGGAAAGTTTTTCTATATCAAAGATTTGGCT CAGGGGGAAGAAGGATAGGGCGAATTCGGCGGCGGATTCGTCGAGAAGGTCTGTTTCATTCAGGTTCCCGGCACCGCGCA ATGCCGCTTCTGTCGGTGATGCAGATGATTTGAAGGCTAGGAGAAACAAATTTGACACAAGGAGTGTTATTTCTGAGATG GATTTTGGGAAATGGGAGAATGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGTTTGGCTATGATGAAGAAAACCAGAGCTG CTATAGTATGGATTCTCAAGCTAGGGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTTACTGGAAGACAGAATAAGG TTGTTCACTCATCCCCTACTCCTTCCAACCTCTAGTGTTCTCTCTTTGTTTATCTCCTCTCTCTTTTTGGAGCAATTTTT TGTTACTACATCTTATAATTGTGGAATCTAGATTTATTATAGTATAATTTTAGTGGTAGAAAGGTGCAAGAGAAGTTGAG AAAAAGTGAAATGAAATGTTGGATCTGAACAAAGTATTTCTGCATAAAGTTTGTCAAGTTTGTTTATGTTCAATTCAATA TGAGAGATTCTTTTGTTGCCTTCGTCCCTGATTTCCCTGTCCAGTTCAGATAAAATCCTCATACATTGAGATTTCAGTTT TCACTTGATAGTACTATCTTGTTATGTTTGTAAATTTTCTCTGGTTTCATAATCTTGTTACATTTCTGTGTTCTTGTGAT GTGACAAAATCCATCAAACTAAGTGTGTTTGGTTGAGTCTTAGAATCAATTCTCATTGACCAGAATTGACTCTAGGTGGT TATATAGATGCTTCATAATCGATATGGAGAATTCATGTTAGTCGTAAACTCAATTCTGAGAGAAACTAAAGAGGGTGGCT TCTGCTGTGGTCTGTGGACATAATCAAAATTTCACAAACATTACGCTATAGAAATCACTTTTCCATGAACGTATTTAAAC ATAAATCACTACACTTTCAACTTATTTTAGCTCACTTTTACCATAATCAATTATATCTAAAATCAATTCTCACAGCGCTG ATGCAAACATGCATTACTAGTGTTTGGTTATGCGGTTGAGAATCTCATAATCAGTTAATCACTTCTAGAGAGGTTAGTTA CAAAATGAAACTTTTGGAGTTAACCTGCATTAAATTGTGTGCTCACCAAGCTACACACCTATAAAATTGCTTTTGGAGTG TAGAAGCACTGCAGTGGGTGTTGAATTACAATCTCAGGTCACTGACTATTTTTAGTGGTGAAAATCCCCCAAACTGGCTT TTTGTACACGATTTTAACTGCAAGTAACTGTAAATTCA
CDS sequence (LotjaGi4g1v0294900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAAATTTCACTCAACAAGGAGACACCTTTCTACCTCCGTCAGAACAACCGCCATTTTTTCTCCCTCAATCTCA ACCTTCACCACCCACCACCACCGTTCGATCTGACAGCAGCAGCAGTTTCAGTTTCAACGACAAGGCCTTGAAGGTTAGTC CCAGCATACTCCTCATCATCATCATTCTCGCCATCGTTTTCTTCATCTCCGGTTTGCTCCACCTCCTCGTTAGATTCCTC TGGCGGCCACCGAGCAGAGAAACCGATGATTTGGACAGTGTCACCGCCCTTCAAGGCCAGTTACAGCAACTCTTCCACCT CCATGATGCTGGTGTTGACCAGTCTTTCATTGACACCCTCCCTGTTTTCCCTTTCAAAGCTATCATTGGGTTGAAGAACC CTTTTGACTGTGCTGTTTGTTTGTGTGAATTTGAACCAGAAGACAAGCTTAGATTGTTGCCGAAATGTAGCCATGCCTTT CACATGGAGTGTATTGACACATGGTTGTTGTCACATTCTACTTGTCCTCTTTGTAGAGCGAGTTTGCTACCTGAATTCTC TGCAAACAATAACCGTTCCCCCATTGTTCTTGTTCTGGAATCTGGGAGTGATAGCTCAAGGGAGATTGTCCCTGAGGGTG GTGGTGCTATTGGAAGGACTAGTTCAGTTATGACTACACATTCTCGCCTTGGTTGCTGCGGTGAGAGCGAATTCGGATCA ACGCGTGTCGATTTACCTCGCAAATCGGGTGAATTAGCTGTAATTGAGAGTCCTGATTCAAATGTTGCAGTTGCAGGGGA TGATGGTGTGGAGAAAGTGGTTACTGTGAAGCTGGGGAAGTACAGGAATGTGGATGGTGGTGAGGGAGGGGATGGTGAAG GAAGTAGCACTAAAAATGTAGATGCTAGAAGGTGTTTTTCTATGGGGTCTTTTGCTTATGTTATGGATGAGAGTTCCTCA TTGCAGGTACCTATTAAGAAAACCCCAATCAAGCCACAGTCAAATAAGAAGCTTGTTTTGCCTTTGACCCCAGGACACAA GCTTGCAATGTCAGAATGTGATTGTGAATCCAGGAGAGACTTCAAATTCTCAGGCTTGCATGCAACTAGAGTTGATCAGA ATCTTGCTGGGGCTTCAAGTGCTTGTAGTGGAAATGGTGCTGCTATTGGAAAGAGCAGAAAGGAAAGTTTTTCTATATCA AAGATTTGGCTCAGGGGGAAGAAGGATAGGGCGAATTCGGCGGCGGATTCGTCGAGAAGGTCTGTTTCATTCAGGTTCCC GGCACCGCGCAATGCCGCTTCTGTCGGTGATGCAGATGATTTGAAGGCTAGGAGAAACAAATTTGACACAAGGAGTGTTA TTTCTGAGATGGATTTTGGGAAATGGGAGAATGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGTTTGGCTATGATGAAGAA AACCAGAGCTGCTATAGTATGGATTCTCAAGCTAGGGCACCTTCTTTTGCTAGAAGGACTTTGCTTTGGCTTACTGGAAG ACAGAATAAGGTTGTTCACTCATCCCCTACTCCTTCCAACCTCTAG
Protein sequence (LotjaGi4g1v0294900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRNFTQQGDTFLPPSEQPPFFLPQSQPSPPTTTVRSDSSSSFSFNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFL WRPPSRETDDLDSVTALQGQLQQLFHLHDAGVDQSFIDTLPVFPFKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAF HMECIDTWLLSHSTCPLCRASLLPEFSANNNRSPIVLVLESGSDSSREIVPEGGGAIGRTSSVMTTHSRLGCCGESEFGS TRVDLPRKSGELAVIESPDSNVAVAGDDGVEKVVTVKLGKYRNVDGGEGGDGEGSSTKNVDARRCFSMGSFAYVMDESSS LQVPIKKTPIKPQSNKKLVLPLTPGHKLAMSECDCESRRDFKFSGLHATRVDQNLAGASSACSGNGAAIGKSRKESFSIS KIWLRGKKDRANSAADSSRRSVSFRFPAPRNAASVGDADDLKARRNKFDTRSVISEMDFGKWENGGGGGGGGSEFGYDEE NQSCYSMDSQARAPSFARRTLLWLTGRQNKVVHSSPTPSNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| Phobius | 1 | 55 | 55 | - | – | |
| MobiDBLite | 28 | 43 | 16 | - | – | |
| PANTHER | 30 | 509 | 480 | 2.7E-145 | – | |
| PANTHER | 30 | 509 | 480 | 2.7E-145 | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 56 | 77 | 22 | - | – | |
| Phobius | 78 | 521 | 444 | - | – | |
| Gene3D | 112 | 184 | 73 | 4.0E-20 | ||
| SUPERFAMILY | 118 | 193 | 76 | 1.16E-21 | – | |
| CDD | 136 | 179 | 44 | 4.00075E-20 | – | |
| Pfam | 136 | 179 | 44 | 9.5E-13 | ||
| ProSiteProfiles | 137 | 179 | 43 | 12.46 | ||
| SMART | 137 | 178 | 42 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0294900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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