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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0300700 |
| Transcript ID | LotjaGi4g1v0300700.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H4; TAIR: AT1G07660.1 Histone superfamily protein; Swiss-Prot: sp|P62785|H41_WHEAT Histone H4 variant TH011; TrEMBL-Plants: tr|K7VQC2|K7VQC2_MAIZE Histone H4; Found in the gene: LotjaGi4g1v0300700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67479420..67483623) extracted from Lotus japonicus Gifu genome v1.2.
CCGTAACATTCATTCTCAGCCAATCATTTCTAATCCAACGGCCCAAGCGTACAGATATTCATTCACGCGGATCACCATTC AATCCAACGGCTAAGCATCTATCCTCTCATCCTATATAAACAAACACGCCGAGTCATCTTCCATCACCGAAAGCAAAACC ACCATCATCTGCAAAACTCACTGAAGCACAGAGAGTGAGAAATCAGCTACCATGTCAGGAAGAGGAAAAGGAGGCAAGGG TTTGGGTAAAGGAGGAGCGAAGCGTCACCGGAAGGTTCTGAGGGATAACATCCAGGGAATCACCAAGCCTGCGATTCGCC GTCTCGCAAGGCGTGGCGGTGTGAAGCGTATCAGCGGTCTCATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTCCTC GAGAACGTTATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGTAAGACTGTGACGGCGATGGATGTTGTTTACGC TCTCAAGAGGCAGGGCAGGACCCTCTATGGTTTCGGTGGTTAGGGATTTAGTGTTCACTGGTCTTCTAGGTCATGTAATT TGATGTTGAATTTAAACAATGTAACACCTAGTTACTTTCCCCAATGATTAATAGATGCTTAGTTCCTGTTTTCAATTGAT CTATATTTCATGTAAATCATGGTTCCCGCAAGTGTTCACTGTTCTGAATCAAAGTTTAATTAGCATCAGTTTATCAATTT GCTCAATTCAATCTCTGATTTCAAGTTTTGTTTTAGGCTTTGATTAATTGTCTGCATTAGAGTTAGTAGAACTAAACATT TCTTATCCTTGGGTGATTATTGAAAGTGACTCAGCTAAGACCATTCTCTCCAAACTCTCCTGGAGTCCCAAGCTGGACGA TTAGATTACCAAACACATGCCCAAGAATACTGTTTTAGTGAATATGCTGGATTCTGATATCCCTAAGCTTTCAATGGACT TGAAGTTTTGTATTGAGTTTATTGGATGTTTCATATTATTGTGTAACTTATAACATAATGATTGGTCAATTTATTTGTGG GTTATAAACGACTGGTAAGTTTTGGCGAATTTGGCTCAACCATGTTGCCCCTCCCAAGCCAAGTGACGTTAATTGTCCCC CATCCTCTGGGACGAGCTATTATGGACGATAACTTGGTAGGTACCCGTACACTATTGATTGTTACTTGAGCCATATATAT GCAAATATGGTTTCTTCCAATTGTCAGATTAGGTTCTCTCATAGTTGAAGTTCAATCTATTATGCGATATTTTATTATGG TACCAGATAGTGTAGCTGATGATGCTTCACATAGTTTTTATTTTGGAATTCATGTTTTAGAGTGTATTTTCTTTGAATGG AGTAGGTTTTTTGAAACATAAGAGCATCTCCAATGATAAGATCTTATTTTGGGACTTAACTCATTTTTTGTGGGCCCAGA CTGCCACATAGGATTTAAGACACTCATAAGGTGCATATGCACATTTCACTCTAATGGATGAGATCTTATTTTACTTTTAA CTGGACCCACGATACTTAATATATTTATATTATTTATTTTCCTCCATATTTTTCACTTTGGTTCTTGTATTGAATGAGAG AGAGAAAAAATATTATTTTATTTAAGATCACACATTTGAGAGTACCTGAGCTAAGTCACGGATCTTAGCAAAAGCTAATA TCTTATGCCACGTAGGATAGCTCCAATGATGAGATCTAATAAGATCCGAATCTTATTTTAAGATCCCAAAATAAGGACTA CATTGGAGATGCTCTAATGCTAGAGATGCTATGTCCTCTTCTTCTGGTTTTGGACCTCTCACCTTGCCTTCCTTGTTTAA AAAAATTTCTCTTTTCAAAATATTAGGACAATATCTAATGAATATCTATAGAATATTTAATAAAATAAAGTACAAATGTT GTTAAGTTGACTTTTACCTTGCAACCTAGCTTGTTAAAACTCTTATAATGTATAAGTGGACGGACAATCATCACTTTTAA CCTAGTATTTACAGTAAAGTCAGAACTATAATCCCCATCCATAGTTGCTTATTCGAGTGGTTTAACATTTTTTTGATCGG CTCAAAATGACACATAGAATATAAACAATTTATAAGTAAACGATTCATATGGTAATTTAATGGTGACTCTTAATTTTTTC ATAATTTTCATAAGCAACACATATATTTATATTTTCACTTAATGCATAATAGAAAATAAATTGTTAGTACAAAAGTGAGA GAAAAAATTATTTAATAAAAAAACACCAATGAACTTGCTAAGCAACCGTTCATGTAAGTGTACTCTAACAAGGAGAAAAA ATAATCAATATTGTTTAGTCTTAAAAATTTGATTGGCCTGAGTCGGTTAAATCACTCGGGGAGGTGTTGATTGAAGAGGG AGCGGTGGAATCTTGGGACAGAGAGTGGAGGGGGGGGGGGTGACTGACAACGTTGATCAGTCCTAGAGGAGTTTATCTAA AGGCACTTTGATGCCTAAGATAGTGGTTGGGCCATTATGGAAAATCTCTAAGTTAAGTGAAATAGATCATGTACCTGATG CCTTCGATGAAAGGGCCTTATATACCTGCTCATAGGGTCGAGGTAGCCCTAGGAGGGGGTCACGAGTTCTTTTGTTCCGG GCACGTCTGCATTGTTATATCTCTCTAAGCCATTGTTTTCCACAAAGATCCAACGACTGAGGGTTTCTCGTTAATGAGGA CTAGATCTTGAGCCTCACACCCAGCCTATGCGACTAGCTCGTAAGGTCAACGATGGGATGAGTGAAGTGATGAGGATCTT ATCTCCTATGGGGGCTAGCTTGGCTCGGCCGAGTAGCGCTTGGGTGCAGTCGGTGGGAGTGATCAGCCTTGAGGCTTGAT CAGGAGGGTAATAGCTCAATCGGCACAAAAGTTGATCAGCTGTGAGTCCTCTGAAACAAAACTAATACAATAACCAGCGT TGTAGAGATTCTTAGCTAGCTATTGAAGCATGTTAATTAAAATTTTGTGGCTTGTACATGGCAAATTCAAATCCCAAATT GCCAAAGCGCGGCTACTATATTTTCATGAGGTACGCTTTGTGCATATTTTCATTTCATTCAAAACTCTTGTGAAAAAATA ATTAGCGGTCACAGTTGAAATCAGCCACAAAATTTCCCCCTCACGTGATTCAAAAAGTTGTGTTTTCTCACAGACACATT TCCCCACAAAAAAAGCACAACCAGCTCAAATCCAAAATTTCAAAACTCCCACAATCCGCCTCGCACTCTTTCCACCAATC ACAATCAACCTTTCCAAATCCAACCGTCCCAATCACTCCACTCTCCTTTTACACGGATCACCACTAATCTAACGGCCACA CATCCCTCACCGTACTCTATATAACACATAGATTCATCCAATCTAATTTAACAGCCAAAGCATATTCGGTTTCCTCTTAA CGAAATCACAGAGAGAGAGCATCACCCAACAACAACCATGTCAGGAAGAGGAAAGGGAGGCAAGGGTTTGGGAAAGGGAG GAGCGAAGCGTCACCGGAAGGTTCTGAGGGATAACATCCAGGGAATCACCAAGCCTGCCATTCGCCGTCTCGCAAGGCGT GGTGGTGTGAAGCGTATCAGCGGTCTCATCTATGAAGAAACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCG TGATGCTGTTACCTACACTGAGCACGCTCGCCGCAAGACTGTGACGGCGATGGACGTTGTTTACGCTCTCAAGAGGCAGG GCAGGACCCTCTATGGTTTTGGAGGATAGAGGATTGGGGATTTATGTGTTTTAGGGTTTCGTTTAGTTTCAATTTCGCTG TTGATATTGTGTAATTGCTCTTGAGCTTCAATTTAACAATCAATGATTATTGTTTGGCTATTTCTTGTTGCTGCGATTAA TTTTTGATTTGCTTTTCAATTTGTTGAATTCGAAGCTGCGATTTCCGATTTTAATTTCTCGCTGTCGTTAACTGGATAAT TGATTCCAATTAGTGAATTCGAGGTTTTTGTGTTTGGATGGTTCTAATCTTGAATGAAATTGAGTGTTTATGCATCGAGT TTAGGTTGAATTGGAATCGATTTGATTTTTGAATTAGAATGTAATTGTTCAATTTTGGTTCTGTAACTTGAGAGGTTGCA TACAGAGGACATTGCACTGTTGCATCTTTTGAATGCGTTTCACA
CDS sequence (LotjaGi4g1v0300700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGAAGAGGAAAAGGAGGCAAGGGTTTGGGTAAAGGAGGAGCGAAGCGTCACCGGAAGGTTCTGAGGGATAACAT CCAGGGAATCACCAAGCCTGCCATTCGCCGTCTCGCAAGGCGTGGTGGTGTGAAGCGTATCAGCGGTCTCATCTATGAAG AAACTCGCGGTGTTCTCAAGATCTTCCTCGAGAACGTTATTCGTGATGCTGTTACCTACACTGAGCACGCTCGCCGCAAG ACTGTGACGGCGATGGACGTTGTTTACGCTCTCAAGAGGCAGGGCAGGACCCTCTATGGTTTTGGAGGATAG
Protein sequence (LotjaGi4g1v0300700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRK TVTAMDVVYALKRQGRTLYGFGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 103 | 103 | 1.2E-74 | – | |
| PANTHER | 1 | 103 | 103 | 1.2E-74 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 2 | 103 | 102 | 1.7E-60 | ||
| SUPERFAMILY | 3 | 102 | 100 | 4.04E-32 | ||
| PRINTS | 5 | 16 | 12 | 2.2E-63 | ||
| ProSitePatterns | 15 | 19 | 5 | - | ||
| SMART | 16 | 90 | 75 | 2.0E-29 | ||
| CDD | 18 | 101 | 84 | 7.44768E-43 | ||
| PRINTS | 20 | 39 | 20 | 2.2E-63 | ||
| Pfam | 36 | 96 | 61 | 1.8E-8 | ||
| PRINTS | 40 | 60 | 21 | 2.2E-63 | ||
| PRINTS | 62 | 76 | 15 | 2.2E-63 | ||
| PRINTS | 77 | 89 | 13 | 2.2E-63 | ||
| PRINTS | 89 | 100 | 12 | 2.2E-63 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi4g1v0300700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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