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LotjaGi4g1v0305400.1

Overview

Field Value
Gene ID LotjaGi4g1v0305400
Transcript ID LotjaGi4g1v0305400.1
Lotus japonicus genome version Gifu v1.2
Description ENTH/ANTH/VHS superfamily protein; TAIR: AT4G25940.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940; TrEMBL-Plants: tr|I1LVM2|I1LVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:68109096..68114381) extracted from Lotus japonicus Gifu genome v1.2.

TTCGTTGCTAACCGGTTTCTTCTTTTGTGGTTGGAAAATGAAAGAGTAACAAAGAAGAAGAAGAAGAACACCATTGTTCC TTCTTCTTTCTCTCTTTCCATCAAATTGAATAACATTAATTTGATGAATGGGAACGTTTAAGAGCTTCAGAAATGTCTAT GGAGCTCTCAAGGACTCCACCAAGGTTGGCTTAGCCAAGGTTAATAGCGACAACAAGGTAATATTTCTTACGATTCATGT TTCTGTGATCTTTATTTCCAACAAGCTATATTTTTCCGTTTATTAATGTTCATGTTTTCATTTGTTTTCTTTTTTTTGAA ATAACATGTTTTCATTTGTTATTCCCTTCATTATCTTTCAATTGAATCATTTTTTTTATGTTGTTCAATTTTCTTTTTGA AGGAATTGGATATTGCAGTTGTAAAAGCTACCAGCCATGCAGAATATCCTCCCAAAGAACGTCATGTTCGAAGTTAGTCC TCAAATTTTGGTGAATTACATTGATGCCTTTTTCATTCTCATGCATTGTGAAAATTGTTTCCTCAAATTAAAGCTTCAAA TTAATCTTTTTCATAAAGCCTTGATTGATGAACATGCCATGCTTGTTTTCCATCTCAATGATTGTGCTTGAAGAAATTAC AAATGAAATCATTAAATTTAGTATATTGAACGTCAAAGCATGTTTAGTTCTGCAGTGGAAAAATCTGTAATCACTCTCAG ATTCCGGTGTTATCATGTTTTGCTATGTCTTCTTGTAGAAATCTTCTATGCCACATCAGCACACCAACCAAGGGCAGATA TAGCTTACTGCATACACCTACTTTCCAAGAGACTTTCCAAGACACAAAATTGGATAGTGAGTCCCTCTTCATACCTAGTG GTTTTGACATTGTTTGAATGCACTAAAAATTAAATCATGGGAACTCTCTTTTTCTCTTTAGTATGATATATTGATAAAAC AACATGTGTTCAACAAGTGTTTGCAAAGATTTAATTTATGCTTGTTTTCTCTTAATGAAAAAACATTAGCAGAAAAGGAG GGAAAAAAGGCTTGATTGATGATCATGTGGGCATTCACCTCTCAAATATGTAATATAAAAGTATATATTGTTGCTCTAAC TCTAATACTCTTGAGAAGTTAAAATTGATCCGAGAGATATGACCTAATAAGCTTTTATATAGGATATTGCAATCCTCACT CTTCTAAGATGGTTTCAGAGCATATCATAGATCCGTTTATTAGAGACCACCTATATATGAGCCTCCGACATATATGTCTA GTCCTGGACATGAGGAGTGTGTTGAGAAGTCTCACATTGACTAGTGATATAGCCAAATAAGCTTTTATATAAGGTATTAC AATTCTCACCCCCTAAGCTTTTGGGTAGAATTATGCCTAATCTAACCTGAATTCTAAGTAATAACCTTCCATAACAAATG TGATATGAAATGTCCAATATATTTAAAGGAGCATTCAGGGGCTAGATCATTCTTAATTTAAGCTTCTCAATTTGTGACTT ATTTATAAAGAGAGAAGAAATTGGGTTTGATCACAATTTTACTCAGAATAGTAACATTAATTTTATCTCAACGTTTTGTG ACATTAACTGAATATGAAATTAATGACAGGTTGCCATTAAAACATTGATAGTGATTCATAGGATATTGAGAGAAGGTGAT CCTACCTTCAGAGAAGACCTTGTAAGCTACTCAAGGAGGATACATTTTCTCCAAATATCCAATTTCAATGATGACTCAAG CCTTCTGTGTATGTTGTTTTTTTTTTTTTTTGTTCTTTTTTTACGGTCAGTGTATGTTGTTATAACTTTTCTTCTATTTT GTTATCTGAACTTTGATGCATGTCATAATTCCTAATCAGATTTCTCTACACAGCTTGGGAATGTTCTGAATGGATTCGAG CCTATGCACTATTTTTGGAAGAAAGACTTGAATGTTATAGAATCCTTAGATATGACATCGAATTTGAAACAAAACCATCA ACTATTTCGACAAAGGTGTGTGTTCCCCTTGTCTTTATTTTGTTCATATTTTTTCAGAAAATTAGTAGCTAACTTTCATC TCTGACAGGTAAATAACAGAACACGAATGTTGGCTAGTGATGAATTGTTGGAGCAGCTTACTACACTTCAGAAACTTCTA CATTGCCTTATTGACTGTCAGGTAAGAATTTATAGGGAAAACTTAAGAACTTAGTTTGATTATTTTCTCAGTATTATGAA TTTAAAAACTATTCTTAGAAACAATTTTAAAACCAGCATTTTAGAAGAAGAAAACAGTTTGAACGAGATGTTTTGCAAAG TTGGAAAACTTGTAACTTGTGAAAACTGACAACAAAAACAGAAAACATCTCTGAGATGTTTTGAGCTTTTGGTTTTAAAA ACCGAAAATAAGATCTCTTTTAAAGAACAATTTTCAAAAATAGTTTATATCAAACAAGTTTTTTTTGCTTATAAAAACTA AAAATTGTTCTACAAAACAGTAATCAAACATGTATCTGCATGAAATCTCCTCATCTTATACTCAACATCTCTTTACTGTT GAAATTGCTGCATTTTCTCTCCCTAAGATAACATCGAATTTGATTTACTACCTTGCAGCCTGGAAGATTGGCTTTTAGAA ATTATCTAATACAGTATGCTTTGGCCCTGGTATGCATGTTTAGTTTGTACTTCTCATATACTAGCAGTTATATGTCTCAG AAAATGTTGCTTGTCAACTACTTCTCTAACTTTATTTGTTTTTGGAGATATCATTCAGGTATTAAAGGAGAGCTTCAAAA TATATTGTGCTCTCAATGATGGAATCATAAATCTTGTGGATGCGGTAGTGTCGATCTCAGTTTAATTTGTTACTTTGGTC ACTTCATTTGGACTTTCAATTATACTAACTAATGAAAGTTGCAGTTCTTTGACATGTCAAGATATGATGCAGTAAAGGCT TTGCATATTTATAAAATAGCTATGCTACAGGTTTAATTATAATGATGCTTTGTTTCAGACACATTCTTCTTATTTTCTAA TGTGAGTTGTGTTTACCATTGATGATTGTTCTTACTATGCAGGCTGTTAATCTTGCACACTTTTATGAACGCTGCAAGGA CTTAGACCTTGCTAGGAGTTTTCAATTTCCAACCTTGAGACAGGTTATTTCTTGCTCATCAGTAGAATTTGTTATTTGAT ATCATTAGACTTTTTCTCACTAGTTCTTTCCTGCAATAAACAGCCACCTCATTCTTTTCTTATCACAATGGAAGAATACA TTAAAGAAGTACCCACATCAGGCTCTATTAATGAGAAACAGGTAAGAAAGTATTTAAAAACTAACTTGAGAAAGCTCGTG TCTGATATGTATTTTGTATATAAGCTTCAAAGAACTAGTATCTGTCTCTTTCTAGCTATAATTGTAAACTTGGAATTGAA GAGTCCATAATCCAAATAAACTTCCATTGGATCACTGAGTCCGGGATTTGTAACATGCAAAGATGGCAAATGAAGCTTAA GCAACTTTCTAGCTATATTCTGTTACATTTTCGTTAATAAATTTCATGTGACATGTATTAGGAAAATGATCAAACTTCTC AAAATGAAGAATCAGAGAGCGAAGAATCCAAAGAGACTCAAGCAGTTGAGAAACAAGCTGAAGAAGTCAATGAGAAAGAA CTGGTAGATGAAGAAACACAACCTAAGGAAGAGGAGGTTGAACCTCCTTCTTTGATATCATTTGATGCTACTGACGATCT GTTGGTGAGTTTTGGTTCTATGATAATTATATATGTTGGCTTGGTTTGATGGAATTTATAATATTTGTCCACCAGCAATG GAAAATTGCAAAAAATGTAAATGTTGATGTAGCAACGCTAACTATGTTATTTGGCGGAAATAATAGGGGTAGTGGATGAT AACTACCAGTTCTTATGTTCTGTATCGTAACTTTTAGTATTTTCCATTTGTCCACCTTTGCAGGGTCTAAATGAAATCAA TCCAAAAGCTCAAGAACTGGAGGAAAGCAATGCATTGGCACTTGCAATTGTACCACCCGGCGGTAAGGCCTAGAGATCAA CCCGTAGTGCACTGCACGCCTCCCTGGGGAATTGAGACTGATAGCATTTGGAGTAACATATCTTTCATCAAAATTAATTC TGAAACACATAAGCTACTAACATAAGCTTTTCTGTAGAATTGATTCTCTCTTCAAAATCAATTAAAGAAGGACTTTCAAC ATGCCCTGAATTTCGCCTCATTAGTTAACCATTCTTGCTATTTGATATTAAATCCAATTCTAAGATATTTTTTGAATTTT GGCAGGAAATAACTCCACCAATCTTGCTTTGACTAACATAAGTGGAACTTCTGCTTGGGAACTTGCATTGGTTACAACAC CAAGTAACCACTCCAGCCCAGCACCAAACCGCAAAATGGTTTGTTTTTTCTGCTATATCAGTAGATGTTTGTAAATCTTT CTAAAATTGATTCTAAAGTCAACATCAAATTTTGGGAGAAACTTATGTGTTTGAAGACCCTCTATTTATAAAACTTATAC TAATCAGACCCATGATCCAAACATGTTATTACTTTAGTGCTGCATTCTTGTCATGCTCAAATTATTTTGATCATAAGCTC AATGAGGTTGAGTTAATCCTTTAATTAAACCTCTAAGAAATGACACTACTTTTCTTTCCCCTTTTTTCTTGAGTTAGGCT GGTGGATTTGACAAGCTATTACTAGACAGTTTATATGAAGATGAAAATGCAAGGAGACAGCTTCAACTACAAAATGCAGG TTATGAATATGAGGGAATGACTCTGCATAACCCATTCAATCACTATACTCAACATGATCCATTTGCAATAGGACCTCCAC ACAATGTGCAAATGACATTGACGGCTCAACAACATCAACAACAACAACATCATCATCAAATGATGTTCCAACAGCAGCAA CAACATAACATGATAATGGTCCCAGCTTACCAGTATCCGCATAATAGTCAATACTCTCAACGGAGTTCTTCTAATCCATT TGAAGATCCCTTACCAGTATCTAGCCATTCTTATAGTTCCACGCACCATCAAGTGAATTACAATTTTATCTAGACTTCAG TTTCTTTCCCACTTGAAGAAGGGCTCATTGAAAATTCATTTATTGTTGGTAAATGAATGTTACATGTACATTATCATTCG TAACAATAAACGATTCATTGTTCATATATATGGTTGGGTTGATGGGGAAAAAAGTTAATAAGTTAAGAGGGGTGCTAGCA ACACAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0305400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAACGTTTAAGAGCTTCAGAAATGTCTATGGAGCTCTCAAGGACTCCACCAAGGTTGGCTTAGCCAAGGTTAATAG CGACAACAAGGAATTGGATATTGCAGTTGTAAAAGCTACCAGCCATGCAGAATATCCTCCCAAAGAACGTCATGTTCGAA AAATCTTCTATGCCACATCAGCACACCAACCAAGGGCAGATATAGCTTACTGCATACACCTACTTTCCAAGAGACTTTCC AAGACACAAAATTGGATAGTTGCCATTAAAACATTGATAGTGATTCATAGGATATTGAGAGAAGGTGATCCTACCTTCAG AGAAGACCTTGTAAGCTACTCAAGGAGGATACATTTTCTCCAAATATCCAATTTCAATGATGACTCAAGCCTTCTGTCTT GGGAATGTTCTGAATGGATTCGAGCCTATGCACTATTTTTGGAAGAAAGACTTGAATGTTATAGAATCCTTAGATATGAC ATCGAATTTGAAACAAAACCATCAACTATTTCGACAAAGGTAAATAACAGAACACGAATGTTGGCTAGTGATGAATTGTT GGAGCAGCTTACTACACTTCAGAAACTTCTACATTGCCTTATTGACTGTCAGCCTGGAAGATTGGCTTTTAGAAATTATC TAATACAGTATGCTTTGGCCCTGGTATTAAAGGAGAGCTTCAAAATATATTGTGCTCTCAATGATGGAATCATAAATCTT GTGGATGCGTTCTTTGACATGTCAAGATATGATGCAGTAAAGGCTTTGCATATTTATAAAATAGCTATGCTACAGGCTGT TAATCTTGCACACTTTTATGAACGCTGCAAGGACTTAGACCTTGCTAGGAGTTTTCAATTTCCAACCTTGAGACAGCCAC CTCATTCTTTTCTTATCACAATGGAAGAATACATTAAAGAAGTACCCACATCAGGCTCTATTAATGAGAAACAGGAAAAT GATCAAACTTCTCAAAATGAAGAATCAGAGAGCGAAGAATCCAAAGAGACTCAAGCAGTTGAGAAACAAGCTGAAGAAGT CAATGAGAAAGAACTGGTAGATGAAGAAACACAACCTAAGGAAGAGGAGGTTGAACCTCCTTCTTTGATATCATTTGATG CTACTGACGATCTGTTGGGTCTAAATGAAATCAATCCAAAAGCTCAAGAACTGGAGGAAAGCAATGCATTGGCACTTGCA ATTGTACCACCCGGCGGAAATAACTCCACCAATCTTGCTTTGACTAACATAAGTGGAACTTCTGCTTGGGAACTTGCATT GGTTACAACACCAAGTAACCACTCCAGCCCAGCACCAAACCGCAAAATGGCTGGTGGATTTGACAAGCTATTACTAGACA GTTTATATGAAGATGAAAATGCAAGGAGACAGCTTCAACTACAAAATGCAGGTTATGAATATGAGGGAATGACTCTGCAT AACCCATTCAATCACTATACTCAACATGATCCATTTGCAATAGGACCTCCACACAATGTGCAAATGACATTGACGGCTCA ACAACATCAACAACAACAACATCATCATCAAATGATGTTCCAACAGCAGCAACAACATAACATGATAATGGTCCCAGCTT ACCAGTATCCGCATAATAGTCAATACTCTCAACGGAGTTCTTCTAATCCATTTGAAGATCCCTTACCAGTATCTAGCCAT TCTTATAGTTCCACGCACCATCAAGTGAATTACAATTTTATCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0305400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTFKSFRNVYGALKDSTKVGLAKVNSDNKELDIAVVKATSHAEYPPKERHVRKIFYATSAHQPRADIAYCIHLLSKRLS KTQNWIVAIKTLIVIHRILREGDPTFREDLVSYSRRIHFLQISNFNDDSSLLSWECSEWIRAYALFLEERLECYRILRYD IEFETKPSTISTKVNNRTRMLASDELLEQLTTLQKLLHCLIDCQPGRLAFRNYLIQYALALVLKESFKIYCALNDGIINL VDAFFDMSRYDAVKALHIYKIAMLQAVNLAHFYERCKDLDLARSFQFPTLRQPPHSFLITMEEYIKEVPTSGSINEKQEN DQTSQNEESESEESKETQAVEKQAEEVNEKELVDEETQPKEEEVEPPSLISFDATDDLLGLNEINPKAQELEESNALALA IVPPGGNNSTNLALTNISGTSAWELALVTTPSNHSSPAPNRKMAGGFDKLLLDSLYEDENARRQLQLQNAGYEYEGMTLH NPFNHYTQHDPFAIGPPHNVQMTLTAQQHQQQQHHHQMMFQQQQQHNMIMVPAYQYPHNSQYSQRSSSNPFEDPLPVSSH SYSSTHHQVNYNFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22951
1 571 571 1.0E-282 –
PANTHER
PTHR22951:SF57
1 571 571 1.0E-282 –
Gene3D
G3DSA:1.25.40.90
6 162 157 3.3E-50
IPR008942
ProSiteProfiles
PS50942
24 161 138 36.018
IPR013809
SMART
SM00273
30 161 132 2.1E-38
IPR013809
Pfam
PF07651
31 307 277 4.1E-87
IPR011417
SUPERFAMILY
SSF48464
31 161 131 5.45E-36
IPR008942
CDD
cd03564
32 154 123 2.94932E-57 –
Gene3D
G3DSA:1.20.58.150
171 322 152 1.6E-39
IPR014712
SUPERFAMILY
SSF89009
175 307 133 1.33E-38 –
MobiDBLite
mobidb-lite
310 371 62 - –
MobiDBLite
mobidb-lite
321 367 47 - –
MobiDBLite
mobidb-lite
539 563 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0305400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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