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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0306200 |
| Transcript ID | LotjaGi4g1v0306200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G47840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840; TrEMBL-Plants: tr|K7KDR6|K7KDR6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0306200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68191410..68195753) extracted from Lotus japonicus Gifu genome v1.2.
ATACCTTTAAAAAAAAAAGGTCCATCAAACTTTTTTAGGAAAATAACATTTTCCTAAAAAACACCTCAAACACGGTGCAA GCTGGTTTGCTAGTTACTTCCAAAGGCTACTAAACTTGCAGGCAGGATCGAAGAAGTGTCCCTCCCACCACAACATGTTC CCGCCGAGGCTCTAATTTGAGGTTTCATTCTCGAAGCCAGAGAGGATGCGCATTTTCCGACACTGCTTCCGGCGACTTGG CCTTACTCTCCACTCTTCATCCACTCTCCATCCAAACACTCCCCTATTCTCCACTCTCAATTATCCCTATGCAGGTGATT TTATTTTTGTTCTATCAAATTGTGTATGAATTGGTAAACAGTTCGAAACTATACACGTAAGATTTGCATGGTTATTTCAA TGTATTCATGTTTCTGCACCTGTTTGAATCTCATTCCAGTTAGTATATTTACAGGAACTGCCACTGAATGTAGAGAATTG ACCTGGCAAGAAAAACCAGAACAGCTAGCTCCAAATGCATACCCTCTTCATATTATGCGTGAACTCAACTCTCAATTGCA GCAACTAGTGAAACAGGGCCAACTTCGTGAAGCGAGGGAGATGTTTGATAAAATGCCTCACAGAGATGAGGTTTCATGGA CCAATTTAATAAAGGGATATGTCAATGCCTCGGACTCCAATGAAGCGTTGAACTTGTTCTCAAGTATGTGGACCCATCAT CCTGGAGTTCAAAAAGATCAATTCGTGGTTAGTGTAGCGCTCAAGGCTTGCGCACGTGGCATGAATGTGTGTTTTGGAGA ATTGTTGCATGGCTTTTCAGTGAAATCTTGTTTGGTAAACTCAGTATTTGTCAGCAGTGCCCTGGTCGACATGTATATGA AAGTAGGCAAAATAGGACAAGGTTGTAGAGTCTTTGAAGGAATGGCAATAAGAAATGTAGTATCATGGACTGCCGTCATT GTGGGGCTTGTACAGGCTGGATATAGTATGGAGGGATTATCGTACTTCTCTGAAATGTGGAGATCAAAAGTTGACTATGA TTCATACACATTTGCCATTGCACTAAAAGCATCTGCCGATTCAAGTTCGTTACATGATGGGAAGGCCATACACGCACAAA CAATAAAACAAGGGTTCAATGAAAGCATGTTCATTATTAATAGCCTTGCTACCATGTATAGTAAATGTGGGAAACCAGAC TATGTCATTCAGTTTTTTGAAAAAATGAGGGAGCCAGATGTAGTTTCATGGACAAACCTTATAACAACTTATGAACAGAG GGGTGAAGAGGAAAGTGCAGTGGGAGCGTTTAAAAGAATGAGGAAATCTGATGTCAATCCTAATGAATACACTTTTGCAG CTGTAATTACTGCCTGTGCAAATCTTGCTATCATTGAGTGGGGGGAGCAGATACATGGCCATGTATTGCGTCTAGGTTTT GTAGATTACTTGTCGGTGGCAAATTCCTTGATTAAGTTTTATTCAAATTGTGGGCTATTAGCGCCAGCTTCGGTAGTGTT TCATGGGTTGACTGGAAAAGATATTATTTCTTGGAGTACTATAATTTCTGTTTATTCTCAAGCGGGACATGCAAAAGAAG TTTTCAACTATCTTTCATGGATGAGAAGGGAAGGGCCGAAACCAAATGAATTTGCTCTTTCTAGTGTGCTAAGTGTTTGT GGGAGCATGGCACTTCTTGAGCAAGGGAAGCAGGTGCATGCTCATGTCCTGTGCATGGGCGTAGATCATGAAGCAAGGGT TCATAGTTCTCTAATTAGTATGTACTCAAAATGTGGAAGTCTACATGAGGCTTCAAAAATCTTTGATGAGATAAAAAACA ATGATACTGTATCATGGTCAGCAATGATTAATGGGTATGCCGAACATGGCTATAGCCAAGAGGCCATTAGTTTGTTTGAA AATTTTTGCAGTGTTGGTTTAGTGCCAGACTCTGTAACGTTCATTGAGGTTTTGACAGCTTGTAGCCATGTTGGATTGGT TGATCTTGGTTTCTACTACTTTAAGTTAATGACTAATGAGTACCGGATCAGTCCATCAAAAGAGCACTATGGTTGCATGA TTGATCTTCTATGCAGAGCAGGGCGTTTGAGTGAAGCTGAGCATATGATTCAAAGCATGCCATTCCATAGTGATGATGTT ATCTGGTCTACCTTACTAAGAGCGTGCAGGGTTCATGGGGATGTTGAGCGTGGAAGATGGACAGCAGAACAGATACTTCG CCTGGATCCGAATTCTGCTGGAACTCATATCACTCTGGCTAACATATATTCTGCCAGGGGGAGATGGAGGGAAGCTGCAC ATATAAGGATGTTAATGAAGTCAAAGGGAGTCATAAAGGAGCCAGGGTGGTCTTCGGTTAATGTAAATGATCAATTAAAT GCATTTTTTTCTGGGGATCAGTCTCATCCACAAAGTGAACATATCACAGACGCTTTGGAATTAATAGGTGCAAGTATAGG ACATGCTAGGATGGAGACAGGTTTTCTTCTAGAAGATGTTGAAGATTAGCAGAAGACTATATTCTAACTCACTATGGCAG TGCTTGGGCAAAGTTATTTTTATATGAGTTTCCATGGTACATATATTTCAAATGATTATTTGGAACTGGTTTCCTAACTC TTATAATTTGAAAACATCTAGCTTGATATGGGTTCTCTTGAACTGAGCTAGACATCATTCAGAAGGCTGCAATTTTTTTT TGATGAAACAAATGAATATACACATCGTTTCCATTGATGCAAAATCTCTAGAGTCTAGACCACTCAAATGAATTTTATTG TTGAATATGTTGTATAGCTAAGTTAGAATTTATTGAAATATTTTTTCTTCTGAATTTATTGTACTAGAGATGAGGGTTTT TTCCCCCTCTTTCTTCTGCACGCCCTCTTCAACCATATGTGAGATCAGTTCTCTATGAAATGTTCCATTATCTTGGTGGC ATCTGTTCTATGTATTTATTTCAAGTGGCTTCCTTCTAAAGTTAAGTAGTATTTTCCATTGTTAAGCATGATTTTGTATT TTTCTGCTATATTTTGCCAACAATCATGCATGTGTCTGGCAATTACTGATTATTTTTTCTGACTATGCAGAAAGGTCGTG CAAATGCAGTTATTTTTTTGTTGGTATTGTTATCTGTTTAGCTGGTCATTATGAATGTTACAGATGAGTCTGATAATATC TACAGACTCTGGGCTAAAGACAATCTCTTTGGAGGATGGTTCAGTAGATAGTTAATCAATGGGCTAAAGACTCCAGTTTT TGGGATTGCAGTCTCTGAATATAGCTGCAACCAGCTGATGCTGTGATAAATTATCTTGCTGTCACCATGTAGAAGGATGC TTCCTCACCGTGTAGGGGGAGATGTTGAATAAAATAAAAGCAGCCAGCGAGCAGAAATTTACTATGTATCAACAATGCGG TCAAATATGTTTGATATATGGCACATGGGGTGGTAAGGACCATTATGTAGCTCGACGTGATGCTTTGTAGAATATGACAA ACAAGACAGTGTTGCCCAGTAGTCAATCAAAAGATTCCAATGCTGTGAAGGGACGTAGCAAGAATCGAAGTGGAAAAACA GAAATGATTGATTTAAGAACACTTCTGGTCCTTTGTCAACTAGCTGTTGCCGCAGATGACTATAGGAATGCACATGAGTT GCTAAAGAAAATCAGGCATCACTTAAATGCTTTTGCGGATGGAAATCAGAGGTTGGCTCATATCTTTGCAGATGGTCTTG AGGGGCAATTGGCTGGCTCCGGAAGCCAAATATGTAAAGGACTTGTTAGCAAAAGAACATTAGCTGCTGATATTCTAAAA GCCTATAATCTATTCCTTCCTGCGTGCCCTTTTAGGAAAATTCCAATTTTATCTCGTGTCACAATAAGGATAACATCTTC AGCACATTCGATGACATTCCATGTTATAGATGCTGGTATCCTTTATGTTTTTTAGTGCCATTGATCATTAGTAGTTTGTA GTTTGAGGTTGTAATCCAAATATAATCAATTATAATGAAGGGCATGTAATAAGAATATCCTTTGATTGCTATTGCTGATT CTGTGGCATCTACCTTGATCCTTCTGCTGGTTTACTTAACTGGAGATGTTGTGTAATTCATCTTGTAAACAGAATCAGTA AGCCTTTAGTTTTCTGGACTTCAACGAATATTTACTATGGACACTTGCTGTTAAGCACACCAAGTTATTGAAACTAATTA TTTTGAACTCTATTTTAAATTGATTTTAGCTCAGTTTTTAAAACTAGAAAAACTGTTTTGAGTTTTGACTATCGTTTTTA GTTTAAAAACCCGTAATACCCTCA
CDS sequence (LotjaGi4g1v0306200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCATTTTCCGACACTGCTTCCGGCGACTTGGCCTTACTCTCCACTCTTCATCCACTCTCCATCCAAACACTCCCCT ATTCTCCACTCTCAATTATCCCTATGCAGGAACTGCCACTGAATGTAGAGAATTGACCTGGCAAGAAAAACCAGAACAGC TAGCTCCAAATGCATACCCTCTTCATATTATGCGTGAACTCAACTCTCAATTGCAGCAACTAGTGAAACAGGGCCAACTT CGTGAAGCGAGGGAGATGTTTGATAAAATGCCTCACAGAGATGAGGTTTCATGGACCAATTTAATAAAGGGATATGTCAA TGCCTCGGACTCCAATGAAGCGTTGAACTTGTTCTCAAGTATGTGGACCCATCATCCTGGAGTTCAAAAAGATCAATTCG TGGTTAGTGTAGCGCTCAAGGCTTGCGCACGTGGCATGAATGTGTGTTTTGGAGAATTGTTGCATGGCTTTTCAGTGAAA TCTTGTTTGGTAAACTCAGTATTTGTCAGCAGTGCCCTGGTCGACATGTATATGAAAGTAGGCAAAATAGGACAAGGTTG TAGAGTCTTTGAAGGAATGGCAATAAGAAATGTAGTATCATGGACTGCCGTCATTGTGGGGCTTGTACAGGCTGGATATA GTATGGAGGGATTATCGTACTTCTCTGAAATGTGGAGATCAAAAGTTGACTATGATTCATACACATTTGCCATTGCACTA AAAGCATCTGCCGATTCAAGTTCGTTACATGATGGGAAGGCCATACACGCACAAACAATAAAACAAGGGTTCAATGAAAG CATGTTCATTATTAATAGCCTTGCTACCATGTATAGTAAATGTGGGAAACCAGACTATGTCATTCAGTTTTTTGAAAAAA TGAGGGAGCCAGATGTAGTTTCATGGACAAACCTTATAACAACTTATGAACAGAGGGGTGAAGAGGAAAGTGCAGTGGGA GCGTTTAAAAGAATGAGGAAATCTGATGTCAATCCTAATGAATACACTTTTGCAGCTGTAATTACTGCCTGTGCAAATCT TGCTATCATTGAGTGGGGGGAGCAGATACATGGCCATGTATTGCGTCTAGGTTTTGTAGATTACTTGTCGGTGGCAAATT CCTTGATTAAGTTTTATTCAAATTGTGGGCTATTAGCGCCAGCTTCGGTAGTGTTTCATGGGTTGACTGGAAAAGATATT ATTTCTTGGAGTACTATAATTTCTGTTTATTCTCAAGCGGGACATGCAAAAGAAGTTTTCAACTATCTTTCATGGATGAG AAGGGAAGGGCCGAAACCAAATGAATTTGCTCTTTCTAGTGTGCTAAGTGTTTGTGGGAGCATGGCACTTCTTGAGCAAG GGAAGCAGGTGCATGCTCATGTCCTGTGCATGGGCGTAGATCATGAAGCAAGGGTTCATAGTTCTCTAATTAGTATGTAC TCAAAATGTGGAAGTCTACATGAGGCTTCAAAAATCTTTGATGAGATAAAAAACAATGATACTGTATCATGGTCAGCAAT GATTAATGGGTATGCCGAACATGGCTATAGCCAAGAGGCCATTAGTTTGTTTGAAAATTTTTGCAGTGTTGGTTTAGTGC CAGACTCTGTAACGTTCATTGAGGTTTTGACAGCTTGTAGCCATGTTGGATTGGTTGATCTTGGTTTCTACTACTTTAAG TTAATGACTAATGAGTACCGGATCAGTCCATCAAAAGAGCACTATGGTTGCATGATTGATCTTCTATGCAGAGCAGGGCG TTTGAGTGAAGCTGAGCATATGATTCAAAGCATGCCATTCCATAGTGATGATGTTATCTGGTCTACCTTACTAAGAGCGT GCAGGGTTCATGGGGATGTTGAGCGTGGAAGATGGACAGCAGAACAGATACTTCGCCTGGATCCGAATTCTGCTGGAACT CATATCACTCTGGCTAACATATATTCTGCCAGGGGGAGATGGAGGGAAGCTGCACATATAAGGATGTTAATGAAGTCAAA GGGAGTCATAAAGGAGCCAGGGTGGTCTTCGGTTAATGTAAATGATCAATTAAATGCATTTTTTTCTGGGGATCAGTCTC ATCCACAAAGTGAACATATCACAGACGCTTTGGAATTAATAGGTGCAAGTATAGGACATGCTAGGATGGAGACAGGTTTT CTTCTAGAAGATGTTGAAGATTAG
Protein sequence (LotjaGi4g1v0306200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRIFRHCFRRLGLTLHSSSTLHPNTPLFSTLNYPYAGTATECRELTWQEKPEQLAPNAYPLHIMRELNSQLQQLVKQGQL REAREMFDKMPHRDEVSWTNLIKGYVNASDSNEALNLFSSMWTHHPGVQKDQFVVSVALKACARGMNVCFGELLHGFSVK SCLVNSVFVSSALVDMYMKVGKIGQGCRVFEGMAIRNVVSWTAVIVGLVQAGYSMEGLSYFSEMWRSKVDYDSYTFAIAL KASADSSSLHDGKAIHAQTIKQGFNESMFIINSLATMYSKCGKPDYVIQFFEKMREPDVVSWTNLITTYEQRGEEESAVG AFKRMRKSDVNPNEYTFAAVITACANLAIIEWGEQIHGHVLRLGFVDYLSVANSLIKFYSNCGLLAPASVVFHGLTGKDI ISWSTIISVYSQAGHAKEVFNYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCMGVDHEARVHSSLISMY SKCGSLHEASKIFDEIKNNDTVSWSAMINGYAEHGYSQEAISLFENFCSVGLVPDSVTFIEVLTACSHVGLVDLGFYYFK LMTNEYRISPSKEHYGCMIDLLCRAGRLSEAEHMIQSMPFHSDDVIWSTLLRACRVHGDVERGRWTAEQILRLDPNSAGT HITLANIYSARGRWREAAHIRMLMKSKGVIKEPGWSSVNVNDQLNAFFSGDQSHPQSEHITDALELIGASIGHARMETGF LLEDVED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| Gene3D | 15 | 150 | 136 | 1.2E-13 | ||
| ProSiteProfiles | 63 | 93 | 31 | 6.434 | ||
| PANTHER | 69 | 256 | 188 | 1.7E-124 | – | |
| Pfam | 74 | 92 | 19 | 0.19 | ||
| SUPERFAMILY | 93 | 658 | 566 | 2.23E-9 | ||
| ProSiteProfiles | 94 | 124 | 31 | 8.561 | ||
| Pfam | 96 | 121 | 26 | 5.8E-4 | ||
| TIGRFAM | 96 | 122 | 27 | 0.0023 | ||
| Gene3D | 151 | 259 | 109 | 7.0E-14 | ||
| ProSiteProfiles | 166 | 196 | 31 | 6.215 | ||
| ProSiteProfiles | 197 | 231 | 35 | 8.199 | ||
| TIGRFAM | 199 | 231 | 33 | 0.0019 | ||
| Pfam | 199 | 228 | 30 | 9.3E-4 | ||
| ProSiteProfiles | 232 | 266 | 35 | 5.941 | ||
| PANTHER | 240 | 353 | 114 | 1.7E-124 | – | |
| ProSiteProfiles | 267 | 297 | 31 | 7.706 | ||
| Pfam | 272 | 296 | 25 | 0.021 | ||
| Pfam | 297 | 346 | 50 | 7.8E-10 | ||
| ProSiteProfiles | 298 | 332 | 35 | 10.139 | ||
| Gene3D | 309 | 455 | 147 | 1.6E-24 | ||
| ProSiteProfiles | 333 | 367 | 35 | 6.478 | ||
| PANTHER | 352 | 458 | 107 | 1.7E-124 | – | |
| ProSiteProfiles | 399 | 433 | 35 | 10.523 | ||
| Pfam | 401 | 430 | 30 | 0.04 | ||
| ProSiteProfiles | 434 | 468 | 35 | 5.667 | ||
| PANTHER | 453 | 665 | 213 | 1.7E-124 | – | |
| Gene3D | 456 | 549 | 94 | 5.3E-19 | ||
| ProSiteProfiles | 469 | 499 | 31 | 8.353 | ||
| TIGRFAM | 472 | 500 | 29 | 0.0019 | ||
| Pfam | 474 | 499 | 26 | 3.9E-4 | ||
| ProSiteProfiles | 500 | 534 | 35 | 11.235 | ||
| Pfam | 500 | 546 | 47 | 2.2E-8 | ||
| TIGRFAM | 502 | 536 | 35 | 4.9E-6 | ||
| ProSiteProfiles | 535 | 565 | 31 | 6.281 | ||
| Gene3D | 557 | 703 | 147 | 2.0E-15 | ||
| ProSiteProfiles | 571 | 601 | 31 | 8.188 | ||
| Pfam | 574 | 598 | 25 | 0.0013 | ||
| TIGRFAM | 575 | 598 | 24 | 2.7E-4 | ||
| ProSiteProfiles | 603 | 633 | 31 | 6.39 | ||
| ProSiteProfiles | 637 | 671 | 35 | 7.629 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0306200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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