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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0314800 |
| Transcript ID | LotjaGi4g1v0314800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter B family protein; TAIR: AT3G62150.1 P-glycoprotein 21; Swiss-Prot: sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21; TrEMBL-Plants: tr|G7JR15|G7JR15_MEDTR ABC transporter B family protein; Found in the gene: LotjaGi4g1v0314800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69163071..69166341) extracted from Lotus japonicus Gifu genome v1.2.
ATACGGTTGAGTGATTGACTCACGGGTCAAGAAATTTGTATGGATGCAATGCTAGTTCCACTTTCTACATAGAAATTATC TGACAAATGCTGCTGTATAGTACTGACTACATATATAAATCATTGAGAACTGAACAATTTCATTAACCTATTACATAAGT TGGAACAAAACTACTTTTGCATTTGGTAGTAGAAAGAAGGTTCATTTCTCTTTTTTCTCTCTGATATGCTTTTAATTTTA CTTAACATGTTGCCATTTTATTGACTAGTTGATTCATGAAGCCATCTTCTTCTTCTTCACATTGGAATGCTTTTCTTGCA GCTGTTTGAGGAGTCTTGACTCCAAAGAAATGGCAGGGGATGGCAGTTTGAATAGAGAAACTGTGAGTCTTCAACCAGCT GTTGATCCTGATAGCAAGCAATCTTCAAAGAAGAGGGACACCAAAGATGAAATCACCAACACAGTGCCCTTGTACAAGCT CTTCTCATTTGCTGATCCTTTTGATCAATTATTGATGTTTCTGGGTACTTTTGGTGCTATTGGGAATGGAATCTCCATGC CCGTAATGACTTTGATATTTGGAAATATGATCAATGCATTTGGAAGCACCACAAACTCCAAAGAAGTTGTTGATGAAGTT TCCAAGGTAATTTCCTACTCTTCAGTAATCAATTTTTGTGAAATTTTAACCTCAAGAGGCAGGTTCTTCTGGTATAAAAT GAATAGGCAAACCACTTAGTGCATGTTTGGAAATCATTCTACAATTGATTCTGAAGCCTAAAATGAATTCAGAGGAAAAA CTTCTGTTAGTACTTAGTAGTAAGACTTCACACAAAATTGATTATGATGAAAGAGAAGCTGATTCAAACATATTATATTA GATTGAACCATGGCATTGACTACATCAATATTAGTTTGAACTGAATTTTTAGGACCTGAAATTCCTAGCTTAACACTTAA TAAGGACTCATTGTGTTCAGGTGTCTCTGAAATTTGTATACTTAGGAGCCGGCACCTTCATTGCATCACTTTTGCGTAAG TATACAAGATTCTTGGTTTGTTCTTACTATCTAATCAATTGGTCTGGCTCATTAAGAACTCTGTTTGCTATGTACCAGAA TCGACTTGCTGGATGATCAGTGGGGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAAATATTCTGAGACAAGA TGTGAGCTTCTTTGATACAGAAACTAATACCGGAGAGGTTGTTGGAAGGATGTCAGGCGATACTGCTCTTATTCAAGAAG CCATGGGTGAGAAGGTATTACCTATCCACAAGTCCTAAATCACAACACTACAAGAAAAGCGCATGTTAAAATCTCAAAAT TGTTGATAAAGCAATTTTACCAATGGCAAAAAAATCTGTCGGTATTGAGTCGTCGTAAGTCATTGGCTGGGGATAAAAAG TCGTCGGCAATTACTAGTGCTCTTGTAGTGTCACCATTTAAGATGATTTGGTGTAAATTTTTTTTTCCTTTTCAGGTTGG ACAGTTCTTATCGCTAGTGGCAACTTTCATTGCGGGTTTTGTTGTAGCATTCACTAAGGGATGGCTTCTAACTCTTGTCA TGCTATCAATTATTCCACTTATTGCCTTGTCAGGTGCTACAATGAGCAAGGTTATTTCAAAAGCATCATCCATTGGACAA GCAGCTTATTCTACAGCAGCAAATGTTGTAGAGCAGACATTAGGTTCTATACGAACTGTATGCACACTGGCAGAATGAAC TCCTAGTCCTATATTTTTCATTTCTTCTGTTTCAGAATATATAAATCTCTTCCATTTTCTCAATGCAGGTGGCATCATTC ACTGGTGAGAAGCAAGCTATAGCTAAATATAATCAATTCTTAACTAAAGCTTACAAGAGTTTAGTTCAAGAGGCACTAGC TTCTGGTGTGGGGTTTGGTGCAAACTATTTTGTGGGTATCTCCAGTTATGGATTGTCTGTATGGTTTGGTGGGAAGATGA TAATAGAGAAAGGATATAACGGAGGAGAAGTCGTGACTGTAATTTTTTCTGTATTGATTGGATCCTCGTAAGTTGTTTGT TCCTTTTTTCTTTCTTGATATGAGCCCATAATATCTAAAATTATTTTATTCCCCTTATCCGAGGAATCTTAACTGATCCA TATAGCCGATCTCACTTAGTGAGATAAGGCTCTTGTTGTATCCAACAAATCTTAAGACATGAACATGTTTTTTCTGGCTA ACTATATTTCCATTTCCAATCTCAGGTCTCTAGGGCAGGCATCTCCAATATTGAGTGCTTTTGCTGCTGGACAAGCTGCA GCCTTTAAGATGTTTGAAACAATTAAAAGAAAGCCTGAAATTGATGCTTATGATGCTAACGGGAGGAAGCTTGATGACAT TCATGGAGATATAGAACTCAGGGAGGTTTGTTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCAC TTTCGATACCAAGTGGTACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTAGTTAGTTTGATAGAG AGATTCTATGATCCACAGACCGGTGAAGTTCTTATAGATGGTGTCAATCTTAGAGAATTTCAACTGAAATGGATCAGACA GAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAGGAAAATATTGCCTATGGAAAGGATGGTG CAACTGATGAAGAAATCAGAGCAGCAGCAGAACTTGCTAATGCTGCCAAATTCATTGATAAACTTCCTCAGGTGACCTCT AAAAATCTTAATTTAAATGTAGAGATTGCATTGTGAAATCTTTGCTTAAAAGTTCGAAATGTTATCTTCCTGAGTTCTGG ATTAACTTTGTCAGCATGGTCTTATTGGACAAAAACAAGAAAAAACATATTTTATTCTCCTACTGAATCGTCTTTTTACC ACAACAATATGAGACAATTATAAATTATGATCTTAGGGACTAGATACAATGGTTGGTGAACATGGAACTCAGCTATCTGG GGGTCAAAAGCAGAGAGTTGCAATAGCTAGAGCAATTCTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTG CTCTTGATGCTGAATCGGAGAGAATTGTACAAGAAGCTTTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCC CATCGTTTAAGCACTATAAGAAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATTGTTGAAAGAGG
CDS sequence (LotjaGi4g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGGGATGGCAGTTTGAATAGAGAAACTGTGAGTCTTCAACCAGCTGTTGATCCTGATAGCAAGCAATCTTCAAA GAAGAGGGACACCAAAGATGAAATCACCAACACAGTGCCCTTGTACAAGCTCTTCTCATTTGCTGATCCTTTTGATCAAT TATTGATGTTTCTGGGTACTTTTGGTGCTATTGGGAATGGAATCTCCATGCCCGTAATGACTTTGATATTTGGAAATATG ATCAATGCATTTGGAAGCACCACAAACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTT AGGAGCCGGCACCTTCATTGCATCACTTTTGCAATCGACTTGCTGGATGATCAGTGGGGAGAGACAAGCTGCAAGAATTA GAGGCTTATACCTTCAAAATATTCTGAGACAAGATGTGAGCTTCTTTGATACAGAAACTAATACCGGAGAGGTTGTTGGA AGGATGTCAGGCGATACTGCTCTTATTCAAGAAGCCATGGGTGAGAAGGTTGGACAGTTCTTATCGCTAGTGGCAACTTT CATTGCGGGTTTTGTTGTAGCATTCACTAAGGGATGGCTTCTAACTCTTGTCATGCTATCAATTATTCCACTTATTGCCT TGTCAGGTGCTACAATGAGCAAGGTTATTTCAAAAGCATCATCCATTGGACAAGCAGCTTATTCTACAGCAGCAAATGTT GTAGAGCAGACATTAGGTTCTATACGAACTGTGGCATCATTCACTGGTGAGAAGCAAGCTATAGCTAAATATAATCAATT CTTAACTAAAGCTTACAAGAGTTTAGTTCAAGAGGCACTAGCTTCTGGTGTGGGGTTTGGTGCAAACTATTTTGTGGGTA TCTCCAGTTATGGATTGTCTGTATGGTTTGGTGGGAAGATGATAATAGAGAAAGGATATAACGGAGGAGAAGTCGTGACT GTAATTTTTTCTGTATTGATTGGATCCTCGTCTCTAGGGCAGGCATCTCCAATATTGAGTGCTTTTGCTGCTGGACAAGC TGCAGCCTTTAAGATGTTTGAAACAATTAAAAGAAAGCCTGAAATTGATGCTTATGATGCTAACGGGAGGAAGCTTGATG ACATTCATGGAGATATAGAACTCAGGGAGGTTTGTTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTT TCACTTTCGATACCAAGTGGTACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTAGTTAGTTTGAT AGAGAGATTCTATGATCCACAGACCGGTGAAGTTCTTATAGATGGTGTCAATCTTAGAGAATTTCAACTGAAATGGATCA GACAGAAAATAGGCCTAGTCAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAGGAAAATATTGCCTATGGAAAGGAT GGTGCAACTGATGAAGAAATCAGAGCAGCAGCAGAACTTGCTAATGCTGCCAAATTCATTGATAAACTTCCTCAGGTGAC CTCTAAAAATCTTAATTTAAATGTAGAGATTGCATTGTGA
Protein sequence (LotjaGi4g1v0314800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGDGSLNRETVSLQPAVDPDSKQSSKKRDTKDEITNTVPLYKLFSFADPFDQLLMFLGTFGAIGNGISMPVMTLIFGNM INAFGSTTNSKEVVDEVSKVSLKFVYLGAGTFIASLLQSTCWMISGERQAARIRGLYLQNILRQDVSFFDTETNTGEVVG RMSGDTALIQEAMGEKVGQFLSLVATFIAGFVVAFTKGWLLTLVMLSIIPLIALSGATMSKVISKASSIGQAAYSTAANV VEQTLGSIRTVASFTGEKQAIAKYNQFLTKAYKSLVQEALASGVGFGANYFVGISSYGLSVWFGGKMIIEKGYNGGEVVT VIFSVLIGSSSLGQASPILSAFAAGQAAAFKMFETIKRKPEIDAYDANGRKLDDIHGDIELREVCFSYPTRPDELIFNGF SLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQTGEVLIDGVNLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKD GATDEEIRAAAELANAAKFIDKLPQVTSKNLNLNVEIAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | - | – | |
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 22 | 505 | 484 | 0.0 | – | |
| PANTHER | 22 | 505 | 484 | 0.0 | – | |
| SUPERFAMILY | 44 | 363 | 320 | 1.06E-60 | ||
| Gene3D | 45 | 371 | 327 | 5.8E-173 | ||
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 54 | 84 | 31 | - | – | |
| CDD | 56 | 340 | 285 | 4.16319E-120 | – | |
| Pfam | 56 | 329 | 274 | 1.8E-63 | ||
| ProSiteProfiles | 57 | 344 | 288 | 48.147 | ||
| Phobius | 85 | 103 | 19 | - | – | |
| Phobius | 104 | 124 | 21 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 125 | 176 | 52 | - | – | |
| Phobius | 177 | 195 | 19 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 196 | 200 | 5 | - | – | |
| Phobius | 201 | 219 | 19 | - | – | |
| Phobius | 220 | 519 | 300 | - | – | |
| SUPERFAMILY | 370 | 506 | 137 | 4.66E-39 | ||
| Gene3D | 372 | 505 | 134 | 5.8E-173 | – | |
| Pfam | 398 | 501 | 104 | 3.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0314800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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