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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0318000 |
| Transcript ID | LotjaGi4g1v0318000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat domain-containing protein; TAIR: AT2G26210.1 Ankyrin repeat family protein; Swiss-Prot: sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein 27; TrEMBL-Plants: tr|I3SWL3|I3SWL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0318000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69554627..69559782) extracted from Lotus japonicus Gifu genome v1.2.
CCAACAGCAGAGATCCATTGAGTGCAGTGGTGCAGTCAAACTGGATCCAATCTCCATGGGCCAAGCCAAAAAAAAAAAAA AACAATGTCACCTCCCTTCCAATGGAGAAATGAATCAATTCGTTCCAGTTCCTGATTCGATCATCAAACACAAGAAAGAT TGAAACTTTGTGTGTTTTAAAGGCAAACAAGACAACCCATTTTGAGAATCAGAGTTATCATCATGTCAACAGAACCTCCT CCTTTTCAAGAAGCAGCGCGATGTGTTGTTTGCAGTTGCAGCTTCAACACCTTCAGGAGACGGGTACCCTCCAATCAGAT CTTGCTGATTTCCCAATTTGGGAATTGGGGTTTTGATTTTCCAATTGATTTGTTGCATGTCATGTTTTTCACCCTCTTTT GATGCATAAAGTTCAATACTTTGCATTGAAATTGGCCTGATCGGTTAAAAATTCTAAATTTATCAGTTAAGATTGTAGCA ATGATGTTATCTACCCCAAAAGTAAATGATGTTTCTGATTAAATGCTTGTTAATCATTAGTATTTTGGTTGTCACAAATT TACAGTTTTTGCTACTTTATGCTTATTCAATTTTCATTTTTGAATACATAATAATGAGCATGTTAGGTTAAGTATTATAA TGGTCATGATGCCTATCGTTTGATCGAAATGTTTTTGATGCTGACAAATTGCTAATTTTGCTAGTGTTACATGAATTTTT ATTCATAAGTAGTAGCACAATATACATGAATTTCAGATTATAATGAATATCTTATCCAGTTCTGGGAACTAACTATACCA TGAACTTCTGTTTGATGTGTGTGCAGCATCATTGTCGATCCTGTGGGAGAACATTGTGCAATGAACATTCATCTGATCAG ATGGTATGTTTTTTCTTGCATTGGTGTAGAATATTTGTGGAGGTGTCATGAGCTTCACTGAGTGGTCTTTTTCTATGTAG GCTTTACCACAATTTGGCCTGTACTCAAATGTCCGAGTGTGTGCTGATTGTTTCAACAATTCACGGTAAATTACTTCCTC ATAAACTTCATATCATGTTATGAATTTTCAGTTATCATTTGATTATAAAACTAGATTTTTTCTGCTTGTGCTAAAAGCAT GCTAATTAAGCTAAGATGTGTTCAGAATTCTTTATACCTGCTTAACATCTTATGATTACCTGAAAATTTAATTTTGTTTC TCCACCTTGTTTGGTGGAACTTGTGACTTGTGTATTTGAGCATAAATGTAAAAACTATGTTGTGAAGATTCTTTCTAGGC TACATTGTATAGGAATCAGTACATACTTGTTATGAATGCTTGATCTAATGATTATGAAATAGTAGTCAATGTAAAATTGA TTTACTTACTGGACCAACTTCATCTTGCTAAGAACATTAGACAAAAGTCCTAGCTAAGATAAAGAATAACCTCATGATTT CCATCATGGCCGATATCCCGCCATATGGCTGCCATACTCTGCCATTATTTGTCACGTATGGTGGGATTTTGGCTTTCCAC CATGACCCGCCATCCGCAATTAACAACACTGGCTGAGATAAAAAATAACCTCATGAAGAAGATCATGTTAAACTATGATG ATACATGGTATATCAGTAACATAAAAGGCTGGAATTTTTATTATTCAATTCAAATTACTATTTCTCAGTGTTTAACAAAT TTTCCTATAAAAGAAATTTCGAACTCCGCTTAGAGGAGGAAAAAATAGTGAGGAATTGTGAGGTAAAGCCTTTTATAGTG ATTATTTTAAGATGTAGTTTCAATGTACTCTACTCATTTAAAGATTTCCTAGAACATGGTAAGTTACTTTCTTGATAGTA TAAAAATATTAATATTTTAAGTTATATGGAAAAATGTTCAGTGCAAGTGTTATGATAGGGAGAAACCTGCACTGGTTCAT GTCTACCGCCAAAAAAGGAAGAAAACATGGCCAGCCATCACCACAAGCGGTGCGACACCTACTCCTGCCACTGAAAGAGC CGCCAGCCAAGGCAATTCAGGCAGGAAGGGCGCCTAACTGCTGTAGCAGTTGTGGACAGTTAGTAGTTGGATCAGTTATG GGTAGTTAGTAGAAGGGTCAGTTTGGATTAGTTATTTATATTTAAATTTATCAGTTATGCAGTAAGTTTGAATTAGAACT GATCAGGGGTAGGTTATAAATAGGAGTTGTATCTTCGTTAAGATTATTCAGAAGTTGTGTGTTTTATGGGGAGAGACTGG ACTCTCGAATTCCAGAATTAGGAGAGGCTAGCTCTCGAAAAACCAGAGTTGTATCATTATCTCTATAATATATTCTGTTC TGATCATGTTATCATAAAATAAGAAATTCCTGACAAATGAAAGAGGATTACAATGAGTTAGGATGAAAAGAGGCTGTCCT TAAAATAAAAGAAAGTAATAAAATAAAACCAAGACAGGACAAAGACCATATCAAATAAGCAAAGCTACTCAATCTCTCAA CATATTTATTGTGGAAAATGGTTAGTCCTTTAAATCGAGCCTGAGCTTTATACCAAGTAGAAGCCACACGCTTATCATAC AAAAGTTATATGGTTGATACTATATTTATTAATAATTTAGCATAAATACGCGTTTCTTGAAAAACTTTCAAATAAGTCCC CCTTTTTTTTGCAACGCAAAGCATAACTCATTTACCAGCATTATCTTTTTTTAGAAAAATAAATGATATGCTAGTGTTTT TTTCCCTTTCTTCTTGTAATAATATCATTATTTTCTACATGAATACTTCAGATCAATATTATATTGAAATAATTTATACC GTACATTGTTGACACAGATCTCAGGAGGTACCACATGCTTCTTCGGATGGAGTAAACAACATAACAGACACAATTTCTAA ATTAGACATTGATGGCAATGTTGATTCAAAAACACTACCAAGTGCAGATAATAACCCTGTGTCAGGCATTAAAGAGTGTA AGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCTGCCCCTTCTTCTGATGCACTCCCTCAGCAGGTAATTATTTGATTT TTTTTTCAGGTACCTTTTTTGGTGCTACCTGCAAACTCATGACTTTTGTCTTTTTGATACTTCATGACAGAAGAAAATCT CTCCAGCCATGACAGCTTCATCAAATCCTAAACCTAGGAAGACAGATACTGTTTCAAAAAATAGAAGCTCCAGCTCCACT AACAAGTTCAGGTTGGGACTGATTAACAAATATCTATCTTGGTGTAAATATGTTTGTTTGTTTAGAACCAGTTCTGGTAC ATAGTTTCAGTGTATAGTTGTTTCTATCTAGAGATTAATGATCATTCCCCACCTTATATGGATTAAAAACTGATCACATA AAGTAAAAGAAAAATGGTGTGGCAAGCATGAAATCACATTCTTTTTTCCTTGATTGTTAAGTTCCTATGCTGGCAGAAAG TTTTAGAAGCTCATTGGTCTTAGAACCACAGCATAAGAGTCCTTTCTTTGAAGTGAAATTGACTAGAAGTATTTGTCGTT GTGTGTTATGCATTCCTTGGCTGAGATGCTAATGGGGAAGGTTTAGCATTTCCCTGCCCCCATCTGCTGAAACCTGTAAT TTGAGAAAACAAGCATTTCCCGCAAAAATCAGGAGGGGATTTTCTATATAAATTTTCTGTAATTGTGCTACAGCCAAAAA TAACTTGATGGTTTATTGTATTATATTTATTTATATCCCTTGTGTGCAAGAGAAGTGAATTGATGCTGGATCTTCACCAT GGAGTTTAGTTTATTTAATATACTGAAATTTCTTTATAATATTGAACATTTATAAAGCAACTAAGAGTACCATTATACGG AAGGTTATAAACTGATCATTGATAATTCATTGCTTAGTTTTTCTCTTGATTGCTTTATGACATGATTATTTGATTGTTTA AAATGCAAAATTTGCAGTTCTCCATTTAACCTTGGTCATGTAACTAATGTTGCCTCAGCCAGACCCCAGACTGATTATGA AGTTAGTGGAGAGGTAGATGTTTTTCATTGTTGAGATTTTTACCGTTTCTGATATGGCATTTTGCGAAAAGATCTTGGGT GTTGAAAGTCATATTGAATTGGTTGTGATGTTCTCAGGGTCTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCA AGAAACTTCTTAATGAGGTTTGTTTATTTGAAACAAGACATTTACCTTCGTAGTTTATTTTTCCGCAAGTAGTGTTCACT GTTCATGGATTCTAAATGTGCAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTGCATTTGGTACCT TTCTCACACCTGTGGCTGTTTGTGCTCAGGCGCGCTCAATCATGAATCTAATTCAGTTTTTCTTAATTATACAGTGGACA CTGATTTTAGTATTCTCTGCAGGCTGCAGTGTTCAATCAAACTGATATAGTTTTCATCCTCATGGATTCAGGGGCAAGCC TGAAGTACAAAAATGCACAAGGCAATTAATCCTTTTCCTTCCTAGAATTCAGCCAGTTACAATATTATTATTCCTGTTCT TAAGTGCAGTAGAGACCCAAAAAATAAAAATAAGATGCAAAATTTGTGTGTTCAGTTCCTAACTTACTGCTTCTTATTCA GGAGAAACACCTTTAGATTGTGCTCCAGCTACACTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGTAATGGA CAAAAACACTTGAATAATCTAGAACTGGGGTGCCCCAAAGAGAGCTTCAAACACTTCCATAGGCTAAATTCTAAAAGGTG AAAGAACTATGTAAGACACATCTTTGTGACTTGTCAGCTACAAAAGTGAGGCACTATCCATAATGTAAATTTATTTGGTG TATGACATAAGAGAGCATTTTTGAGCATACATCTCTGTTGTTGCCCTGAGCTATCTTATTTTCTTCCACTGCAATATTTT TATAAATGAGGAAGTCAAAAAGTAGAATTTAGTAAAGAACAAAACCATTTATTAAATATCCAAAATTAAATCATTATCTT AAGTAAATCAAAAGCTGGAAAATTAAAGCAAAAGTAATTAATACAACATTTGCCGCTTAATCTAAAATATATGAATTTTA GACTAATATAATGAAAGTTTAAAATAAAAATAAAAT
CDS sequence (LotjaGi4g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACAGAACCTCCTCCTTTTCAAGAAGCAGCGCGATGTGTTGTTTGCAGTTGCAGCTTCAACACCTTCAGGAGACG GCATCATTGTCGATCCTGTGGGAGAACATTGTGCAATGAACATTCATCTGATCAGATGGCTTTACCACAATTTGGCCTGT ACTCAAATGTCCGAGTGTGTGCTGATTGTTTCAACAATTCACGATCTCAGGAGGTACCACATGCTTCTTCGGATGGAGTA AACAACATAACAGACACAATTTCTAAATTAGACATTGATGGCAATGTTGATTCAAAAACACTACCAAGTGCAGATAATAA CCCTGTGTCAGGCATTAAAGAGTGTAAGTGTGGAATGCCTCTTTGCATTTGTGAAGCTCCTGCCCCTTCTTCTGATGCAC TCCCTCAGCAGAAGAAAATCTCTCCAGCCATGACAGCTTCATCAAATCCTAAACCTAGGAAGACAGATACTGTTTCAAAA AATAGAAGCTCCAGCTCCACTAACAAGTTCAGTTCTCCATTTAACCTTGGTCATGTAACTAATGTTGCCTCAGCCAGACC CCAGACTGATTATGAAGTTAGTGGAGAGGGTCTACGAGAAGCAATAAAAAATGGTGACATTGCTGCTGTCAAGAAACTTC TTAATGAGGGTGTGGATGCAAATTACAGGGACAAGCAAGGACTGTCTTTATTGCATTTGGCTGCAGTGTTCAATCAAACT GATATAGTTTTCATCCTCATGGATTCAGGGGCAAGCCTGAAGTACAAAAATGCACAAGGAGAAACACCTTTAGATTGTGC TCCAGCTACACTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGAGTAATGGACAAAAACACTTGA
Protein sequence (LotjaGi4g1v0318000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTEPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVCADCFNNSRSQEVPHASSDGV NNITDTISKLDIDGNVDSKTLPSADNNPVSGIKECKCGMPLCICEAPAPSSDALPQQKKISPAMTASSNPKPRKTDTVSK NRSSSSTNKFSSPFNLGHVTNVASARPQTDYEVSGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT DIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKMEEGGVMDKNT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 283 | 283 | 2.9E-94 | – | |
| SMART | 2 | 69 | 68 | 9.9E-15 | ||
| Gene3D | 2 | 70 | 69 | 9.6E-19 | ||
| CDD | 7 | 64 | 58 | 1.96953E-24 | – | |
| ProSiteProfiles | 8 | 68 | 61 | 12.03 | ||
| SUPERFAMILY | 8 | 67 | 60 | 2.4E-17 | ||
| Pfam | 9 | 66 | 58 | 2.8E-14 | ||
| MobiDBLite | 133 | 172 | 40 | - | – | |
| MobiDBLite | 134 | 172 | 39 | - | – | |
| Gene3D | 144 | 277 | 134 | 1.1E-18 | ||
| SMART | 193 | 222 | 30 | 1200.0 | ||
| ProSiteProfiles | 198 | 267 | 70 | 21.11 | ||
| ProSiteProfiles | 198 | 225 | 28 | 8.576 | ||
| SUPERFAMILY | 199 | 268 | 70 | 6.37E-17 | ||
| Pfam | 200 | 267 | 68 | 1.3E-7 | ||
| ProSiteProfiles | 226 | 258 | 33 | 11.087 | ||
| SMART | 226 | 255 | 30 | 0.074 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0318000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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