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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0319200 |
| Transcript ID | LotjaGi4g1v0319200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G26440.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12; TrEMBL-Plants: tr|V7C8L2|V7C8L2_PHAVU Pectinesterase; Found in the gene: LotjaGi4g1v0319200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69686738..69690395) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAGAAGTGTATTGGCTTTGTATCCACAACTCAACCAACACACACTTAAAACAAAAGTCAGTGTTGTTTTAGATTCTA ATCAATGTTCACTAGGTATATTATTTAGAGGAGTTAAATACTGAAATTCTTCAACTTGTGAATACATTTTAACATTTTTT TTTCTCTTCTTAGTTTTCATGAAATTTCATGGCTACTTCATCTCCTAAACTCTTCCTACTCCTCCTCTTAGCAATCTCCT GCTACTCCTCCAATGCATCCACAAAAACATTTCATGCAAATCTCTCTTCCTTAAAATCTTTGTGCAAAACTACTCCATAC CCTGATGCTTGCTTCAATTCATCCAAGCTTTCCATCTCCATAAACATCAATCCAAACATCCTCAACACCCTTCTTCAGTC CCTCCAAGCAGCAATATCAGAAACCACAAAGCTATCTGAACTTTTCAACAATGCAGGAGAACACTCAGACATCAAAGAGA ACAAAAGAGGAACAATCCAAGACTGCAGGGAACTCCATCAATCCACCTTGGCTTCCTTAAAAAAATCATTATCTGGGATC CATTCCAAGAACTCAAGGAAGCTAATTGATTCAAGAACCTACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGA AAGTTTGGACTCTGCTTCTGGTACCCTGAAGCCAGTGCTTGTGAATTCTGTGATCAACACTTATAAACATGTCAGTAACT CTCTTTCAATGATTCCTAAGCCTGAGAAAAGTGCTCCAACATCAACATGGTTTCCAACCAAAAAAGACCTTGAAATCAGT GATGAAGTGCCTATGCTGGTTGTGGCTGCAGATGGAACAGGGAACTTTAGCACCATAAGTGAAGCCATTGATTTTGCTCC AAATAACAGCTTTTATAGGACAATAATCTATGTGAAAGAAGGGGTGTATGAGGAAAATGTGGAGATCCCTACTTATAAGA CCAATATTGTTCTGCTTGGTGATGGAAGGGATGTCACTGCCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACT TTCAGATCTGCAACTTTAGGTAAGTAAACCCTTTATTGAAACTACCAATGTGCCTGATATGTCTTTTGCATGTTTGGTTC AGATTTATTTCATCATAGTTAATTTTGAAAGCCATGAATATGAGGATTTATGATGTTCTTCCTTCTTTTTGAATTATTCC TTATATGTTTGATGCTTCTCTATTTGAGAGTGTAGTTTGTTGGGTTTAGGCGTATGTAATAAAAAAAAAGCTATTCCTTT TATTTATAAGCAAAATTGTATTAGGGGAGAGTATAAGGGGTACTCCAAAATCCAAACCCATAGTACATAATATAAGGAAA GGAAAAGAATGTAAAAGAAATGTTGATAACTTCTCCCCATAACCCATAAGCTATTCATAAAAGCTTCTCCCCAACTATAA CTTCAGAATCAATAAACGTTTCAGAACATGCACCACTTTGATAGAGATGTTTATAGAACTGATTCATAGAATCAATTTTT GTGTGTTTGAATATTTTCTTTCATAATTGATTCTTGTTTCAAAATCAATTTAGGGAGAAGCTTTTATGAGTATCTTTAGG GTGCAAAAATTTATTATGAGAAAAAATAAGTTGATCCAAACATATTAAAATTATAGCTTATAGATCGACATAATCAAATA TGAGATTTCACAAGTATAAACATTACCCTTGTAAATTTCACCTTTACGATGAATGTACTCAAATATAAATAAATCACTTC ACTTTTTATCTCACTTTTATCATGATCAATTTCTACAAAATCAATTCTATTCACGGTCAATTCTGAAAATGATTATTCAA ACACACTATATAATCTAATTATGCCTTTGAATTAGGTTATTTTTTACTCAAAATTAATTCTAATACTTAGAAGCTACGCA CTGAAACTTTTTTCCAAAATCGATTTTGCATTAGAATGATTTTCAAACACTCAAAAATATTAGTAGTACATTTTTGTTAT AGTTTTAATTTCAAACAGAAAATTCTCCCATGTTTCTTATTGTAAGTCCCCAAAATTTCAATAGCATAATCATTCTTTCT TTTCTTTTTCAGCTGTCTCAGGGGAGGGATTTCTAGCACGTGACATAGCTTTTGAGAACACGGCAGGGCCAGAGAAGCAT CAAGCAGTTGCACTGAGAGTGAATGCAGACTTAACTGCTTTCTACAGATGCACCATGCTTGGTTACCAAGACACTCTTTA TGTTCACTCCTTCAGGCAATTCTATAGAGAGTGTGACATTTTTGGGACCATAGATTTCATATTTGGCAATGCAGCAGTGG TGTTACAAGCATGTAACATTGTGTCTAGAATGCCACTACCTGGCCAATTCACTGTCATTACAGCACAATCAAGAGATTCC CTTGATGAGGACACAGGAATCTCAATCCAAAACTGCTCAATTTTAGCTACGGATGATTTGTTTTCAAACTCTAGGAGCTT CAAGAGCTACCTAGGGAGACCATGGAGGGTGTATTCTCGTACTGTGTTTCTTGAGTCTTACATTGATGAGTTCATTGACC CTACAGGGTGGACTAAGTGGTCTGATTCTGATGATGAAGAATTGGACTCTTTGTACTATGGAGAGTATGAGAATTATGGG CCTGGGGCAGGGACTGAGAACAGAGTGAATTGGGCTGGGTACCATTTAATGGATTACAATGATGCCTATAACTTCACTGT TTCAGAGTTCATTATTGGGGATGAGTGGCTTGGTTCTACTTCCTTCCCTTATGATGAAGGGATTTGATTAAAAAAGAGAC AAAGTGAATAGATTTAACTTGTTCCTCTCAGTCCTCCTTAACAATGTAAAATTAACAACAAAAATTGCATGGCTGATTTT AATGTTTTAGTTGAGGTCCCTATTAGTCACTTGACTTTGGTTCCTATGCTTCAATTTTGTTGGTTTTAGACTTTAAGTGC AAAGAAATAGATCCTTTGAGACTCAGCTAATGTGGGAACAACAAAGCACTTACTACTAGACATTGAGAGAGAGAGATGCA GTCGGTTATGGTGCGGCGGCGATTTGGAAGCCTCATCCTCAAATCGCTCTCCAAAACTCGCAGCTATTTCTCCTCCTCCG TTGCTGTTTCTAGTCCCACGCCCACCACATTACCACCACCACCAATCACTGAATCCGCACTCCTGCTGCGTTCAATCGAA TCTTCTCAGCGGCATTTCATCGAACACCTTGCCCCACTCCTCACCCCTTCCATTCTCACCTCCTTCGACCTCACCAGTCG ATGCTTCTCCTTTTGCACCCTCTACCGCTTCTCATACCCCAAACCCTCAGTCCACCGCCTCCTTCACCCCCTCATTCTCA CCGGCGCCGCCAACCCAGAGTCGATTTTCAACGAACTGGCACGTACCCGGGAGCTTCTCAACCTCTTTGATGCTCTCATC ACGGCTTATTGTGAACTCAACAAGCCCGATGAGGCTCTCAACTCCTTCTACTTGATGAAGGAAAAGGGATTTCTGCCAAA GATTGAAACCTGTAATGACTTGTTCCTCAAGTTGAATAGAAACCAGGCTGAGGAGTTTATTAGGCACATGGACACTCTTG GGCTGAAGCCTGCTATATATGAGTATAACACACTCCTACACTATGGAGGAGACAAGTT
CDS sequence (LotjaGi4g1v0319200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTTCATCTCCTAAACTCTTCCTACTCCTCCTCTTAGCAATCTCCTGCTACTCCTCCAATGCATCCACAAAAAC ATTTCATGCAAATCTCTCTTCCTTAAAATCTTTGTGCAAAACTACTCCATACCCTGATGCTTGCTTCAATTCATCCAAGC TTTCCATCTCCATAAACATCAATCCAAACATCCTCAACACCCTTCTTCAGTCCCTCCAAGCAGCAATATCAGAAACCACA AAGCTATCTGAACTTTTCAACAATGCAGGAGAACACTCAGACATCAAAGAGAACAAAAGAGGAACAATCCAAGACTGCAG GGAACTCCATCAATCCACCTTGGCTTCCTTAAAAAAATCATTATCTGGGATCCATTCCAAGAACTCAAGGAAGCTAATTG ATTCAAGAACCTACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGAAAGTTTGGACTCTGCTTCTGGTACCCTG AAGCCAGTGCTTGTGAATTCTGTGATCAACACTTATAAACATGTCAGTAACTCTCTTTCAATGATTCCTAAGCCTGAGAA AAGTGCTCCAACATCAACATGGTTTCCAACCAAAAAAGACCTTGAAATCAGTGATGAAGTGCCTATGCTGGTTGTGGCTG CAGATGGAACAGGGAACTTTAGCACCATAAGTGAAGCCATTGATTTTGCTCCAAATAACAGCTTTTATAGGACAATAATC TATGTGAAAGAAGGGGTGTATGAGGAAAATGTGGAGATCCCTACTTATAAGACCAATATTGTTCTGCTTGGTGATGGAAG GGATGTCACTGCCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACTTTCAGATCTGCAACTTTAGCTGTCTCAG GGGAGGGATTTCTAGCACGTGACATAGCTTTTGAGAACACGGCAGGGCCAGAGAAGCATCAAGCAGTTGCACTGAGAGTG AATGCAGACTTAACTGCTTTCTACAGATGCACCATGCTTGGTTACCAAGACACTCTTTATGTTCACTCCTTCAGGCAATT CTATAGAGAGTGTGACATTTTTGGGACCATAGATTTCATATTTGGCAATGCAGCAGTGGTGTTACAAGCATGTAACATTG TGTCTAGAATGCCACTACCTGGCCAATTCACTGTCATTACAGCACAATCAAGAGATTCCCTTGATGAGGACACAGGAATC TCAATCCAAAACTGCTCAATTTTAGCTACGGATGATTTGTTTTCAAACTCTAGGAGCTTCAAGAGCTACCTAGGGAGACC ATGGAGGGTGTATTCTCGTACTGTGTTTCTTGAGTCTTACATTGATGAGTTCATTGACCCTACAGGGTGGACTAAGTGGT CTGATTCTGATGATGAAGAATTGGACTCTTTGTACTATGGAGAGTATGAGAATTATGGGCCTGGGGCAGGGACTGAGAAC AGAGTGAATTGGGCTGGGTACCATTTAATGGATTACAATGATGCCTATAACTTCACTGTTTCAGAGTTCATTATTGGGGA TGAGTGGCTTGGTTCTACTTCCTTCCCTTATGATGAAGGGATTTGA
Protein sequence (LotjaGi4g1v0319200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSSPKLFLLLLLAISCYSSNASTKTFHANLSSLKSLCKTTPYPDACFNSSKLSISININPNILNTLLQSLQAAISETT KLSELFNNAGEHSDIKENKRGTIQDCRELHQSTLASLKKSLSGIHSKNSRKLIDSRTYLSAALTNKNTCLESLDSASGTL KPVLVNSVINTYKHVSNSLSMIPKPEKSAPTSTWFPTKKDLEISDEVPMLVVAADGTGNFSTISEAIDFAPNNSFYRTII YVKEGVYEENVEIPTYKTNIVLLGDGRDVTAITGNRSVVDGWTTFRSATLAVSGEGFLARDIAFENTAGPEKHQAVALRV NADLTAFYRCTMLGYQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVLQACNIVSRMPLPGQFTVITAQSRDSLDEDTGI SIQNCSILATDDLFSNSRSFKSYLGRPWRVYSRTVFLESYIDEFIDPTGWTKWSDSDDEELDSLYYGEYENYGPGAGTEN RVNWAGYHLMDYNDAYNFTVSEFIIGDEWLGSTSFPYDEGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 18 | 18 | 5.0 | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 3 | 521 | 519 | 8.8E-283 | – | |
| PANTHER | 3 | 521 | 519 | 8.8E-283 | – | |
| TIGRFAM | 8 | 183 | 176 | 2.8E-21 | ||
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 521 | 498 | - | – | |
| Gene3D | 30 | 184 | 155 | 1.8E-10 | ||
| SMART | 30 | 181 | 152 | 1.1E-24 | ||
| Pfam | 34 | 181 | 148 | 6.9E-19 | ||
| SUPERFAMILY | 35 | 183 | 149 | 2.62E-23 | ||
| CDD | 37 | 187 | 151 | 1.29512E-32 | – | |
| Gene3D | 207 | 521 | 315 | 5.9E-125 | ||
| SUPERFAMILY | 209 | 519 | 311 | 1.33E-107 | ||
| Pfam | 210 | 507 | 298 | 3.3E-137 | ||
| ProSitePatterns | 353 | 362 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0319200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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