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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0319700 |
| Transcript ID | LotjaGi4g1v0319700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein; TAIR: AT3G43230.1 RING/FYVE/PHD-type zinc finger family protein; Swiss-Prot: sp|Q9URW6|YIE2_SCHPO SH3 domain-containing protein PJ696.02; TrEMBL-Plants: tr|I1MS36|I1MS36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0319700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69733907..69738263) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGATTTTATTTTGAAAATAATTGCTACTTTTTAAAAAAAGAAATAAAGAAAATTGAGTCGATTGGTCTCCACAGACA CAGAGATAGAGATTGTTTCAGTCTCGCACGCATGCTCATGCTTTCCGTCTCAACGACGCCATTGCAGCCGGTGATTTATC GGATCGATCTTCCTTCACGATTCGTAGTATTGCTTCCTTCCTTCCTTCCCTGTTCCTCTCTGTCTCTGATTTTCCCTTCC TTTTCCTTTTCCTTTTCCATGTGCAGTGCAAGTGCAAGTGCAAGTGCAACACCATTCAATTCGATTTCCAATTCGCTTCA ACTCAATTAAGCTTCGCAATCGCACCTTCATTCATCCAATCCAATCAAAGGTTATTTATTATTCATGTAATTATCCTCTT CATGCTTAATTCAATTCTATTTTTGGTCATCGAAACCCTAATTTCACATGCCCCATGATTGAGCTTCTCTTTTGATGCAT TCTCGTAATTTCCTTGCGTGATTGATTTTTCTGCATGCAATTCGATGCTTAACATCACTTTTCCCTCAACTTTTGATGCC CCAATTCACTTTTGGTTTTGGAAACTTTGATCATAACTTTTTTTTTTCAAAAGCTGTTTCCCTTTGCTGATTTACTATCT ATTCCTCGTGCCCCTTCAATAAAGTTTGTAACTTTGGAACGTTTTGTTGCAGTTTTGGATTGCATGCAGTGTAGTTTGGT TGGTGTATGGCATCGTCTAATGGTAAAGTAGCGTACGCTTCACTTTCTAAGCTAGAAAAGGAGGACGCCCACTTTGGTTA TGATGATATGAATAGCTATAGCGAGTCTACGTGGTCTGAACCCAAGTCTGGTGCCGCAACGTTCTCGAATCAAGAGAAAT TGTATCAGTTCCCTTCGGAGGATGATGACTTGTTTGATGGAGGTTATGAATCAGAGGACGATGCTTATGCTCGTCGTATC ACCCCCTCTAACATGCCTCCAGAGGTGAACTTGAAGAATGTACTTGGTGGGATCTGCGCTATTTTGACTGGGAAAAACAA GGCTCCGAAGATTGCTGTAAATGAGCAGCTCCCGATTTCGAATGTGTCGTTTTTTGACTCTGGGAATGATGGAGATATTG TCCATGCGTCCGTGTACTCACCGAGTGCTCCGCCTCTTTGTCTGCCAAATGGGGCTGATTATAGTTCATACAAGGAGGTC TTAGAAGCTGAACCCCCTGACTGGCTCCCGGATAGTGCTACTACTGTTTGTATGCAGTGTACTGCTCCATTTACTGCACT TACCCGCGGGAGACATCATTGCCGGTTTTGTGGAGGGATTTTCTGTAGGAATTGTACAAAGGGGCGGTGTTTGTTGCCTG TTAGGTTCAGGGAAAGGAATCCTCAGAGGGTTTGTGATTCCTGCTATGATAGGCTTGATCCTTTACAAGGAGTTCTTATC AACACCATTAGTAATGCTGTGCAGCCAGCTAAGCATGATGTCATGGATTGGACCTGTGCTAGAGGGTGGATTAATCTTCC TATTGGTTTATCTATGGAGCATGAGATATATAAGGCATCTAATACATTGAGAAGCTACTGTCAGGTTTGTTTGTTTTTGT CATTTCATTTAAATTTTCATTGAGCAAGTCACTTTTTTTAGTCTCATTCCGAAGTCCATGGATAGAATTTCTTTTATTGT TTATTTGTGTTTGTTTGGGCGGTTGCTACTTGCTAATGCTATAAAGTACCAACTTATTGCAGAACTGTTATATCTGAATA ATAGTATTGTAGTAGTCCTGTTTTGGATTAAAATTCATGCATCAGCTGCTTCATGTTATCCATCAAGTTTCTAGGTATAA GATTTTCTGAATATATTAAGCTGCTTTTATATAAATACTTTCATATATGGCAGGTGGCCCAATCAAATCCTGAAAGGTCC ATCCCTTTAGCTGTTCTTAAAAGTGCTCAGGGCCTAGCAATTTTGACGGTTGCCAAAGCTGGTGCACTGCTCTCTTACAA GCTGGGTACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCATCAGCTATATTCTCCCTGGGTTTAG GATGGGGTGCTCAGGTAAAGAGAATATATCCAGGTTTAGTTCACGTGTATAAATTGTATCACTACGGTTATGATTACTGC TTTGGCTTAATTAAAAAAATGGAGAAGAATGTAACGACTGGAGGTGTGCCATTTTGAAATTTACGCTCATTTAGAATTTC CTTTGTTCTTCAATTTTGATTGATCTATGAATATTCTTTCTGTGACCTTATTTATATGAACACTCATGCATGTGTTATAA CCATTTCTAAGCTATCAATTAACTAAACATCACCCTTCTAATAATAAGTCAGTAGAAAAGATAAAAAAGTCTACACGGTT GTGTTTGTGTGGTTATAATTCATTTTTGACTGATGAATAAATGCTTATCTTGTATTCCCAGATTGGTGGTGAGCTTATGG ATTTTATAATTGTTCTCCGGGATATGAAAGCTGTGAAGACATTTTGCAGTCGCATGCATTTTTCTCTTGGTGCTGGTTGT AGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGATATTCGTGCTGGTGATAGAGGCTCCGGCATGTGTTACAC CTACAGTTGCAGTAAAGGTAGTGATATTAAAAATGTTCTGCATATCTGGATTTTCTTTTTACATGAAATGCAAATGAAAA TTTTAATTTAAGTTCATTTAAATGCATGAGTCATATTTCGACTTTTCACCATGTTAGTATCCAAATTATGGCTTTCAAGT TTAATATAATTTCATTATCTGATCTAAGATGTTGTCAAATCCATGTTATGTGATAACAGTGCTAATATTATTTATATACT AACCTAGATATCAAGTTTAAGAAAACTAGAATTATTTGTGGCCTGAAGTCATTTGTTGGGGCTTTATCTTTTTTTCCAAC ACATTATAGTGTCATTATTTTGCCTTTATTATATACAGTGTTGAATCTGCAAAGCGTTAAGATAGTTCTTTGTCTAAATG GCCTAACTTTGTACTTGGCATTGCCTGAAACATGGCCTGGTCTTTCCATCTCCTTGTTTGTGAAAAGTCAAGGTACTGAT TATCAGGAAAAACATGGGTACCATAGTAATGCAATAAGACTAATAAGCACATTTCACTATTGTGACTATGCTACTTTATT CATTTTCATTGTGTGCTTGCGCCTTCTACTTGTAATATTCCCATGATTAATGTCAGTGTTGGTAGAATGATGTTTGGAAA TACAGCTAACAACACGGAATGTTGCCAAACTGTAGGAGCATTTGTGGGCGTCTCATTGGAAGGGAATATAGTTGCAACCA GAAGGGATGCCAATTTGCGCTTTTATGGTGATCCTTATCTCACCACCTCTGATATTCTACTTGGGATGGTGGATAGACCA AAGGCTGCTCAACCGTTGTACGCCAGTCTTCAAGCCCTATATTCCAGTTTACGCTACTAGCCCTTGTCCCAATTTCCAGT TGCAGAATTGCACTTGTCATTCATAGCATGATTGGTTCTGCAGAGTCTCGTATTCACATTGTTCTGTTTTGGATTGTGTT TCCATGCCATCACCAAATACCAATCCAAATTTGCAAGAGTGACAAACACTGCCCGTTGTATATACAAGTTCTAGCTTGTG CATGGAGTTCTGAAATGGGATTCTCATTGCAAAGTTGAAGTTGTTTTTATATTTGGTTCATTTGGATGAGGGATCTATGC GCTTATAATTTGGTTAAACATTATATTTATTTCAAATGATGTAAAAAGTTCAATACTCAACTTATATTGTGTATGATATT AGCCATAATTGTACATAGACAATCAATAATTATTTAACTTGTCGAGGATTTTCCCTGGGACTGAATTTTTAGGATGGTAA TACTTAATTATTTGAAATCTGTTGATACCCACATGAAAATAAGAGTGCTGAACATGATTTGATGCAGAAAGGTTACACTG TCACATGGACGACAAGGCTTGGGAAGTCTTCTTCATAGACAGCTGTCTCATATATCTGAACTTTTCTGCTTTTCTTTTTT TGCTTGATAAAAATATTTGTGGCTACTATATTATGCATCAGTGTCACTGTCATGGATGTCTTAATAAATGGAGGGATCGG GTACAACTGTATAAGAAGGTGGAGGAAGGAACTGGACCAGTAAATAACATTATTTTTTAAGACTTCATTTATATTAATGT AAATGTAAGTTTGATGAGATAGGAAGAGAAAAAAAATCTCATATGTGAAGGGGAGAAAAAGGTTAAAGATGTTACTGTAT ATCAATCACCACTCAATAATTATTGGTAAAATTCCAG
CDS sequence (LotjaGi4g1v0319700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGTCTAATGGTAAAGTAGCGTACGCTTCACTTTCTAAGCTAGAAAAGGAGGACGCCCACTTTGGTTATGATGA TATGAATAGCTATAGCGAGTCTACGTGGTCTGAACCCAAGTCTGGTGCCGCAACGTTCTCGAATCAAGAGAAATTGTATC AGTTCCCTTCGGAGGATGATGACTTGTTTGATGGAGGTTATGAATCAGAGGACGATGCTTATGCTCGTCGTATCACCCCC TCTAACATGCCTCCAGAGGTGAACTTGAAGAATGTACTTGGTGGGATCTGCGCTATTTTGACTGGGAAAAACAAGGCTCC GAAGATTGCTGTAAATGAGCAGCTCCCGATTTCGAATGTGTCGTTTTTTGACTCTGGGAATGATGGAGATATTGTCCATG CGTCCGTGTACTCACCGAGTGCTCCGCCTCTTTGTCTGCCAAATGGGGCTGATTATAGTTCATACAAGGAGGTCTTAGAA GCTGAACCCCCTGACTGGCTCCCGGATAGTGCTACTACTGTTTGTATGCAGTGTACTGCTCCATTTACTGCACTTACCCG CGGGAGACATCATTGCCGGTTTTGTGGAGGGATTTTCTGTAGGAATTGTACAAAGGGGCGGTGTTTGTTGCCTGTTAGGT TCAGGGAAAGGAATCCTCAGAGGGTTTGTGATTCCTGCTATGATAGGCTTGATCCTTTACAAGGAGTTCTTATCAACACC ATTAGTAATGCTGTGCAGCCAGCTAAGCATGATGTCATGGATTGGACCTGTGCTAGAGGGTGGATTAATCTTCCTATTGG TTTATCTATGGAGCATGAGATATATAAGGCATCTAATACATTGAGAAGCTACTGTCAGGTGGCCCAATCAAATCCTGAAA GGTCCATCCCTTTAGCTGTTCTTAAAAGTGCTCAGGGCCTAGCAATTTTGACGGTTGCCAAAGCTGGTGCACTGCTCTCT TACAAGCTGGGTACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCATCAGCTATATTCTCCCTGGG TTTAGGATGGGGTGCTCAGATTGGTGGTGAGCTTATGGATTTTATAATTGTTCTCCGGGATATGAAAGCTGTGAAGACAT TTTGCAGTCGCATGCATTTTTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAGGCAGAT ATTCGTGCTGGTGATAGAGGCTCCGGCATGTGTTACACCTACAGTTGCAGTAAAGGAGCATTTGTGGGCGTCTCATTGGA AGGGAATATAGTTGCAACCAGAAGGGATGCCAATTTGCGCTTTTATGGTGATCCTTATCTCACCACCTCTGATATTCTAC TTGGGATGGTGGATAGACCAAAGGCTGCTCAACCGTTGTACGCCAGTCTTCAAGCCCTATATTCCAGTTTACGCTACTAG
Protein sequence (LotjaGi4g1v0319700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSNGKVAYASLSKLEKEDAHFGYDDMNSYSESTWSEPKSGAATFSNQEKLYQFPSEDDDLFDGGYESEDDAYARRITP SNMPPEVNLKNVLGGICAILTGKNKAPKIAVNEQLPISNVSFFDSGNDGDIVHASVYSPSAPPLCLPNGADYSSYKEVLE AEPPDWLPDSATTVCMQCTAPFTALTRGRHHCRFCGGIFCRNCTKGRCLLPVRFRERNPQRVCDSCYDRLDPLQGVLINT ISNAVQPAKHDVMDWTCARGWINLPIGLSMEHEIYKASNTLRSYCQVAQSNPERSIPLAVLKSAQGLAILTVAKAGALLS YKLGTGLVVARRSDGSWSAPSAIFSLGLGWGAQIGGELMDFIIVLRDMKAVKTFCSRMHFSLGAGCSAAAGPVGRVLEAD IRAGDRGSGMCYTYSCSKGAFVGVSLEGNIVATRRDANLRFYGDPYLTTSDILLGMVDRPKAAQPLYASLQALYSSLRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 47 | 473 | 427 | 1.8E-231 | – | |
| PANTHER | 47 | 473 | 427 | 1.8E-231 | – | |
| Gene3D | 155 | 242 | 88 | 6.4E-22 | ||
| SMART | 161 | 232 | 72 | 5.3E-23 | ||
| Pfam | 165 | 230 | 66 | 1.9E-18 | ||
| SUPERFAMILY | 165 | 237 | 73 | 1.44E-20 | ||
| ProSiteProfiles | 169 | 231 | 63 | 12.66 | ||
| CDD | 272 | 473 | 202 | 1.18528E-112 | – | |
| Pfam | 347 | 472 | 126 | 7.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0319700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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