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LotjaGi4g1v0322800.1

Overview

Field Value
Gene ID LotjaGi4g1v0322800
Transcript ID LotjaGi4g1v0322800.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Pectin lyase superfamily protein; TAIR: AT1G19170.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A1J7I293|A0A1J7I293_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:70095264..70101269) extracted from Lotus japonicus Gifu genome v1.2.

GAAATTGTCAAAATTTAAGTGCACCCTTTTAAGGATCCAAGACTTTCACCACACTGTTACCATATCATTGTCTTCCTAGG TACCAACTTTCACCAGTTCCAGTTCCAGTTCCAGTTCCCCAAACAAGTCTGTCATCTTCTTCCCTTTCAATTCACTCCTT CAATTTATTCCTCCTTTCTCACTCATTCCCTTCCACTCCAATCTTGGAATCCATGAGCTTCGACCAAACCCACATCGTCA GCTGCTAAATCCAACTCCATCTCGCAAAAGGGTAGTTTCTTTTTTCTCAGTCGAATGATGGTGGAGACCTCAACGCTTGG GCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGACATCGCACAAGACCCTTTTCACCGTTC TCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTGGCTTCTTGGTCTTCGGCCGTGTTCCG GCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTTACTCTCAA TACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGTTCCTTCTG GTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAGCTGAAGATGCTGTTGTGCTTGGCATT GATGTGAGTTTTCCTTTTTCTGTTCTTGACTGTTTTGTTTTTGTGTTGTTTGGTATGTCATTTATTAAGAAAAACATAGA AATGCAATTATGAAGATTTATAACTGATAAGTTCTTAAAATTAGGTGATAGTTGGAGTTGTTTTTTGTTGTGACAAATTA CAGTTTCTTATGCTAAATGGCTTGAGCATTATTATTCTTATGCTTGTGTCTTTGGCTTTATGGAATTATGATATTGATCA TGATCTGGGATTAACAAAGAGCACCAATGACTGTGTTATTGGTGATAACAATTGTTTTATTGATACCACTATATTTGATG GCTAGGGCTGCTGTTCAGAGCTTGTAGTTGACTGCACAACAACTTTTAATTAAGCTTTAGGGCCTAGCTTGCTTTATCTT TTTGAGCAATTTTGTTGTGCCTAGATTGTAACAGACTTTGATGTTGTCTAAAGTCAAGTTTATGGCCTGATGAATTTCTG GATACCAACCAAATTGCTGTCATATCAGCAGTTTGGCCACATGAGTACCTATATCTTAGAATATGCTTGAAATGATGACT TTAGGAGTATATATACATCTGCATATACATTGTGCATTTGGCATTGAGTGGGAAATTTCAGGCTTAATATCTGCGTTAAG TTACTAGTAGGTTATGTGTTCTGCTAAATCATCATTGATATCTTAGGCCATTAATCACTTATATATGTAATTCTATCTAT TTCTTTGATAATCTATTGCTTCAACTGCATTTCTCTTCCATTATCTCATAATTGGACATTTTATTTGTCATCTTATGTGA TGGCTAACAGGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCCTGGGCCTC GATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGTGAGGATCTTTCATCCTGCTTCTAGTTA GTGGAGGGGTAGCAAACTCTTCCATTCTCAACTAAAATGTCTTTACTTAATATTGAATGTCATTGTAAGCACATTCAATT CGTTATCTTGCAATGAAGCATGATTCGTTTATATTTAGGAAAATGGAGGAATGTCAACAGATTTTTGGAGTCTCAAGAAG GAAATAACATTGTCGAACTTATCTTTATAGTTGATATACATATATTTCAAAGGCTTAAGCTAATGGTGAACAGATATTTG AGTACTTTCTTGTTGACCAATATCTCGTTAAACTTTGAAGTATTTGTATTTGTCAGGAACCAACTATTTTAAAAGCTTCA ATTATTTTCTGAGAACTTTGAATGATTTTAAATTATATTTATTACATGCCTCCTCACGCAAGAGTACTTTGGGCTTTAGG CGTGAACATTGCACCTGGGGTGGAAATAGGCTAGGCTAAACCTTGTTTTGTGTAAACATGTCTGAGTTCTGACCTACTTA AAAAGTTTAAGGCCTAAGCATGGCTTATTACGTGTCAGACTTTTTTTTAGGTCTGACCTTGTCTTCTTGAAACATTGTTC TGACCTGATAGCTATTTAATGACTTATTTCATAATAAGACCTTTACATAGGCCAACACATCTATCTGTAAATATGCCAAC AAATTTATCGGCAAACAGGCTAGAATATACTAAAACAAACATATCTATAAACAAATGATCAGACTTATAGGCTTATAATT TTCACTGGCCCACCTTCCTTGTGATAAAACAACTTTTTATTAGAAGAACGGGGATGGCAAAAATCAAACTCTAGACCACT TCATGGAGTCTGATACTATGCCATAAACCAACTATTTCAAAAGTATAGGTTGTTGGATGAAGATACATGAATAGTTTTAT ATTAAATTTTTAAATATACTGATTTTAATCAACAGTGGTTCTACATGTGTTGAGAAACCAGTTGATTTAGCATTTACTAA CACTTCCTTCGTGTATTGGTGCACTGCCTCATATTCTACCCCCATACCCTCATTAAAGGGAAAAGGCTTAGCATAGCATA AAGTCTTTCTTTATTCACACATCTCATCATCCACCTAATACTGTGATTGATTAAGCAATCATCTGAAGGGTAGCACAATG CACAAGGAGAAATCCTGACCCGGATTAAATTAGTGCACTAACCACGACTCAAATTCATTCCCCCTTCTATTTAATAGAGT ATAGATAGTAATATATTCATACTATGACATCATGTATCACATGTATCATCATACCATGGGCCTGTATATAAACAGGGCAC CATGCTCAGTTGTAACTATCTATTGATGAATAACAGAAACTGTTACACTTTCTCTCTCTTCCTTTCTCTCTCTCTCTCTC TCTATATATATATATATATATATATCTTTAATATATATATAAAGATATATATATATATATGTATATATCTTTTACTATGT GTCATGCTTAAGCTTAATTTCTAAGTTTCTCTGATTCCACCTATTGTCATTACTGACAGGGCATAACGGTACCATAAATG GACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGATCATGTGG TCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGCAAAAACAT TACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGGCAAGTATCTTC TACTGAAAACTAAACTTTATTTATATCTTGATGTATGAATTATGATATATGACTTTCTGATCGGTTCTATCCCAATCTTT GATTTGTTAGTTTTGAGGATAGCTAAACCAACTTGAAAAATGCTCCATGTAAACTAATTTCTTATATGAGTTATATGAAT ATCAATACCAACTGATTCAGTGGGAGGATGGTTACTGGGGAAGGAATTTTTTCAGTGATCCTTCTGCACTTATCATCTAA GCTTGTTTGAGGTGTCAATTTTTTGGGACATGTATCGCCAATTCTGTCGGTGATTAATTTTGGAATTTAGACAGCAGATT TGTGCTATATGTGTAAAATGTTTTTGTCTGTTTATGTGCCAGCACAATGTACTCCATTTAACCTGGTGTCTGTTATTATT TATCTTGCTTGTGTTTCAATTATCAATCTGAGAGATGGGCAGTTACCTTGGACTGGAATGTTCATCATCAATATTGGTTT TGTTGTTATATAAAGAGTTCTAATAAACTTGAATTTAATGGTGCGAACAGACTCTTGCGAGGATATGTTGATAGAAGACT GTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGCAAGGCCTTCC ATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGGTGAATCCCTAACTCAACCAATATATACTTTTCTGC ATGCCTTTCAGCATCTTGTATAACTGAAGAGTAAAAAATATAAGTTTGCATAACCGCATAAGTGTCCCCCCATGTATAGT TGGTTTATGTTAGTATAGGAATGGGAATTGCCTTTTCTAGTGTCTGCTCATCTTGTTTTATTCTGAATTTCTATCAGTTA ACATTCCTAGTTAACTTCTCTTTGCTAACCAACTCTAGTTAACTTCGATAACTGCACAAATCTTTAGTATCTGTCTCGTC ATGCATTAGGGTGTGTCATATCCTGATGATTTTATTGAATGGAACAGTGCTGGTGTCTCAATAGGCAGTGAGATGTCTGG CGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGGTGTAAGGATTAAGACTGCAGCTGGAC GAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCCGTGTTGGAATTGTTATGAAGACAGAT TACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGAGACATAAGCTTCACCACTGTCCATGG CCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAGAAATGTAACTTTTCGCGACATGTCAG TAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCCAAGTAATAGGGACCATCTTTCCTTCT CCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCTGCATCCCAGAATGTAACAGATATAGA TTATGATTTTTGAGGTGTCATGTTAACTAATTCCTGGTCTCTTGTTCCACGTATTATCGGGGCTCAATTTATGTCTGTTG TATTTGATCAGTTTTGTGGGGTTGGAGCATTCAATTCATACTTTTTTTTTTTTTGCACCTTTTGTAATTTCACTTCCTTG CTCCATTTTATAGCTTTCTGGAGTGGAGTAGTTGTAAATACGGAAAATTTTCAGATGCTTAGATAAGTTTATTTGATTAC ACAAATACATAGCCTATGGTGTGAGCATTTTACCTCCATGTGATATCAATATAAAAGGAACTGCATGAGGCAACAACATC GGAAAGATGAAGTAAGAAAATTGCAGTACAATGTGCGTTACCTTTTATTAATTCTTTGGCAGTTTTGCCCAACATGTGAG ATCATGTTTATGAATCCATTCTAGTCAAATTGATGGTGCAGCTGGTCATTGAGGCTGAATTGAATAATACTTAAAATCTT TAAATGAACATTTTCAAATTAATTCTTTGGCAGTTTTGCCCAACATGTGAGATCATGTTTATGAATCCATTCTAGTCAAA TTGATGGTGCAGCTGGTCATTGAGGCTGAATTGAATAATACTTAAAATCTTTAAATGAACATTTTCAAATTAATTCTTTG GCAGTTTTGCCCAACATGTGAGATCATGTTTATGAATCCATTCTAGTCAAATTGATGGTGCAGCTGGTCATTGAGGCTGA ATTGAATAATACTTAAAATCTTTAAATGAACATTTTCAAAGATCGGGGTCTAATTTGTATGTGACCCAAACTTCAGAGTG CCAATGTGCATTTACCTCCCCTAAGAAAATCATTATCTGTCTCTCCACCCAAATGAGATGAGAGACTATCTATTACTTTA TTTTCTCTTCACTTTCTCTCTTATTTCTCTTCTACCTTAGGAGATGACATGTGCAATCAACTATTTCTCTCTATTTTATT CTCTCTTAACTATTTATTTCTTCTAATGTCAAAAAAAAACTATTTATTTCTTCTCACTTTTTATCCCAACCAAACATACT CTAATG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0322800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGAC ATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTG GCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGA GGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGG TGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAG CTGAAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGG AGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGG TACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTC AGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGAC TGCAAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGG CAAGTATCTTCTACTGAAAACTAAACTTTATTTATATCTTGATGTATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0322800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFG GVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYG REHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYD CKNITIKNVTILAPVFEAPNTDGIDPGKYLLLKTKLYLYLDV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 20 20 - –
PANTHER
PTHR31339:SF48
19 267 249 7.3E-144 –
PANTHER
PTHR31339
19 267 249 7.3E-144 –
Phobius
TRANSMEMBRANE
21 47 27 - –
TMHMM
TMhelix
21 43 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
48 282 235 - –
Gene3D
G3DSA:2.160.20.10
61 269 209 9.7E-58
IPR012334
SUPERFAMILY
SSF51126
65 267 203 4.54E-52
IPR011050
Pfam
PF00295
169 268 100 2.3E-16
IPR000743

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004650
Molecular function Polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0322800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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