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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0322800 |
| Transcript ID | LotjaGi4g1v0322800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase superfamily protein; TAIR: AT1G19170.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0L9UYN8|A0A0L9UYN8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0322800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70096297..70101197) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTAGGTACCAACTTTCACCAGTTCCAGTTCCAGTTCCAGTTCCCCAAACAAGTCTGTCATCTTCTTCCCTTTCAATT CACTCCTTCAATTTATTCCTCCTTTCTCACTCATTCCCTTCCACTCCAATCTTGGAATCCATGAGCTTCGACCAAACCCA CATCGTCAGCTGCTAAATCCAACTCCATCTCGCAAAAGGGTAGTTTCTTTTTTCTCAGTCGAATGATGGTGGAGACCTCA ACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGACATCGCACAAGACCCTTTT CACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTGGCTTCTTGGTCTTCGGCC GTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGAGGAGTGGGTGATGGGGTT ACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGGTGGGGCCCAGCTCAATGT TCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAGCTGAAGATGCTGTTGTGC TTGGCATTGATGTGAGTTTTCCTTTTTCTGTTCTTGACTGTTTTGTTTTTGTGTTGTTTGGTATGTCATTTATTAAGAAA AACATAGAAATGCAATTATGAAGATTTATAACTGATAAGTTCTTAAAATTAGGTGATAGTTGGAGTTGTTTTTTGTTGTG ACAAATTACAGTTTCTTATGCTAAATGGCTTGAGCATTATTATTCTTATGCTTGTGTCTTTGGCTTTATGGAATTATGAT ATTGATCATGATCTGGGATTAACAAAGAGCACCAATGACTGTGTTATTGGTGATAACAATTGTTTTATTGATACCACTAT ATTTGATGGCTAGGGCTGCTGTTCAGAGCTTGTAGTTGACTGCACAACAACTTTTAATTAAGCTTTAGGGCCTAGCTTGC TTTATCTTTTTGAGCAATTTTGTTGTGCCTAGATTGTAACAGACTTTGATGTTGTCTAAAGTCAAGTTTATGGCCTGATG AATTTCTGGATACCAACCAAATTGCTGTCATATCAGCAGTTTGGCCACATGAGTACCTATATCTTAGAATATGCTTGAAA TGATGACTTTAGGAGTATATATACATCTGCATATACATTGTGCATTTGGCATTGAGTGGGAAATTTCAGGCTTAATATCT GCGTTAAGTTACTAGTAGGTTATGTGTTCTGCTAAATCATCATTGATATCTTAGGCCATTAATCACTTATATATGTAATT CTATCTATTTCTTTGATAATCTATTGCTTCAACTGCATTTCTCTTCCATTATCTCATAATTGGACATTTTATTTGTCATC TTATGTGATGGCTAACAGGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGGAGGGAGCATCC TGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGTGAGGATCTTTCATCCTGCT TCTAGTTAGTGGAGGGGTAGCAAACTCTTCCATTCTCAACTAAAATGTCTTTACTTAATATTGAATGTCATTGTAAGCAC ATTCAATTCGTTATCTTGCAATGAAGCATGATTCGTTTATATTTAGGAAAATGGAGGAATGTCAACAGATTTTTGGAGTC TCAAGAAGGAAATAACATTGTCGAACTTATCTTTATAGTTGATATACATATATTTCAAAGGCTTAAGCTAATGGTGAACA GATATTTGAGTACTTTCTTGTTGACCAATATCTCGTTAAACTTTGAAGTATTTGTATTTGTCAGGAACCAACTATTTTAA AAGCTTCAATTATTTTCTGAGAACTTTGAATGATTTTAAATTATATTTATTACATGCCTCCTCACGCAAGAGTACTTTGG GCTTTAGGCGTGAACATTGCACCTGGGGTGGAAATAGGCTAGGCTAAACCTTGTTTTGTGTAAACATGTCTGAGTTCTGA CCTACTTAAAAAGTTTAAGGCCTAAGCATGGCTTATTACGTGTCAGACTTTTTTTTAGGTCTGACCTTGTCTTCTTGAAA CATTGTTCTGACCTGATAGCTATTTAATGACTTATTTCATAATAAGACCTTTACATAGGCCAACACATCTATCTGTAAAT ATGCCAACAAATTTATCGGCAAACAGGCTAGAATATACTAAAACAAACATATCTATAAACAAATGATCAGACTTATAGGC TTATAATTTTCACTGGCCCACCTTCCTTGTGATAAAACAACTTTTTATTAGAAGAACGGGGATGGCAAAAATCAAACTCT AGACCACTTCATGGAGTCTGATACTATGCCATAAACCAACTATTTCAAAAGTATAGGTTGTTGGATGAAGATACATGAAT AGTTTTATATTAAATTTTTAAATATACTGATTTTAATCAACAGTGGTTCTACATGTGTTGAGAAACCAGTTGATTTAGCA TTTACTAACACTTCCTTCGTGTATTGGTGCACTGCCTCATATTCTACCCCCATACCCTCATTAAAGGGAAAAGGCTTAGC ATAGCATAAAGTCTTTCTTTATTCACACATCTCATCATCCACCTAATACTGTGATTGATTAAGCAATCATCTGAAGGGTA GCACAATGCACAAGGAGAAATCCTGACCCGGATTAAATTAGTGCACTAACCACGACTCAAATTCATTCCCCCTTCTATTT AATAGAGTATAGATAGTAATATATTCATACTATGACATCATGTATCACATGTATCATCATACCATGGGCCTGTATATAAA CAGGGCACCATGCTCAGTTGTAACTATCTATTGATGAATAACAGAAACTGTTACACTTTCTCTCTCTTCCTTTCTCTCTC TCTCTCTCTCTATATATATATATATATATATATCTTTAATATATATATAAAGATATATATATATATATGTATATATCTTT TACTATGTGTCATGCTTAAGCTTAATTTCTAAGTTTCTCTGATTCCACCTATTGTCATTACTGACAGGGCATAACGGTAC CATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTCAGA TCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGACTGC AAAAACATTACTATAAAAAATGTTACAATATTGGCTCCTGTATTTGAAGCTCCTAATACTGATGGCATAGATCCTGGCAA GTATCTTCTACTGAAAACTAAACTTTATTTATATCTTGATGTATGAATTATGATATATGACTTTCTGATCGGTTCTATCC CAATCTTTGATTTGTTAGTTTTGAGGATAGCTAAACCAACTTGAAAAATGCTCCATGTAAACTAATTTCTTATATGAGTT ATATGAATATCAATACCAACTGATTCAGTGGGAGGATGGTTACTGGGGAAGGAATTTTTTCAGTGATCCTTCTGCACTTA TCATCTAAGCTTGTTTGAGGTGTCAATTTTTTGGGACATGTATCGCCAATTCTGTCGGTGATTAATTTTGGAATTTAGAC AGCAGATTTGTGCTATATGTGTAAAATGTTTTTGTCTGTTTATGTGCCAGCACAATGTACTCCATTTAACCTGGTGTCTG TTATTATTTATCTTGCTTGTGTTTCAATTATCAATCTGAGAGATGGGCAGTTACCTTGGACTGGAATGTTCATCATCAAT ATTGGTTTTGTTGTTATATAAAGAGTTCTAATAAACTTGAATTTAATGGTGCGAACAGACTCTTGCGAGGATATGTTGAT AGAAGACTGTTACATAAGTGTGGGAGATGATGCAATTGCGATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGCAA GGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTCCGTTCTATGGTCAGGTGAATCCCTAACTCAACCAATATATAC TTTTCTGCATGCCTTTCAGCATCTTGTATAACTGAAGAGTAAAAAATATAAGTTTGCATAACCGCATAAGTGTCCCCCCA TGTATAGTTGGTTTATGTTAGTATAGGAATGGGAATTGCCTTTTCTAGTGTCTGCTCATCTTGTTTTATTCTGAATTTCT ATCAGTTAACATTCCTAGTTAACTTCTCTTTGCTAACCAACTCTAGTTAACTTCGATAACTGCACAAATCTTTAGTATCT GTCTCGTCATGCATTAGGGTGTGTCATATCCTGATGATTTTATTGAATGGAACAGTGCTGGTGTCTCAATAGGCAGTGAG ATGTCTGGCGGGGTTTCCAACGTCACGGTGGAGAACCTTTTTGTATGGGATTCCCGGCGTGGTGTAAGGATTAAGACTGC AGCTGGACGAGGAGGATATGTGCGCCAAATAACTTATCGAAACCTAACGTTCGAGAATGTCCGTGTTGGAATTGTTATGA AGACAGATTACAACGAGCACCCTGATGATGGGTATGACCCTACGGCACTTCCAGAAATCAGAGACATAAGCTTCACCACT GTCCATGGCCATGGAGTTCGTGTGCCGGTGCGTATCCATGGTAGTGAAGCGATTCCGGTGAGAAATGTAACTTTTCGCGA CATGTCAGTAGGGTTAACCTACAAGAAGAAGCACATCTTTCAGTGTGCCTTTGTTGAAGGCCAAGTAATAGGGACCATCT TTCCTTCTCCATGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGCTGGTTAAGCATTCTGCATCCCAGAATGTAACA GATATAGATTATGATTTTTGA
CDS sequence (LotjaGi4g1v0322800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTGGAGACCTCAACGCTTGGGCGGTTCCACCACCAAAGGCTCGACTTCAAGCGCTGGTTTCCGGCATTCTTGAC ATCGCACAAGACCCTTTTCACCGTTCTCTGGATCGCCGCTTTCGCCTCGGTTTTCCTCTGGCAGAGGAACATAGTCGGTG GCTTCTTGGTCTTCGGCCGTGTTCCGGCGAGGCCGATGCCGAAGCTCCGCCCGGTGGCTTTCAATTTGACGGATTTCGGA GGAGTGGGTGATGGGGTTACTCTCAATACTGAGGCATTTGAGAGAGCGGTTTCTGCCATTTCCAAATTGGGGAAGAAAGG TGGGGCCCAGCTCAATGTTCCTTCTGGTCGTTGGCTTACTGCACCGTTTAATCTTACCAGTCACATGACTTTGTTTCTAG CTGAAGATGCTGTTGTGCTTGGCATTGATGATGAGAAGTATTGGCCACTGATGCCTCCATTGCCTTCATATGGTTATGGG AGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAAAATCTTAAAGATATTGTCATAACAGGGCATAACGG TACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACAAGGGGGCCACTTGTTC AGATCATGTGGTCTAGTGACATTGTGATCTCTAATATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCGTATGAC TGCAAAAACATTACTATAAAAAATGTTACAATATTGACTCTTGCGAGGATATGTTGA
Protein sequence (LotjaGi4g1v0322800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVETSTLGRFHHQRLDFKRWFPAFLTSHKTLFTVLWIAAFASVFLWQRNIVGGFLVFGRVPARPMPKLRPVAFNLTDFG GVGDGVTLNTEAFERAVSAISKLGKKGGAQLNVPSGRWLTAPFNLTSHMTLFLAEDAVVLGIDDEKYWPLMPPLPSYGYG REHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMWSSDIVISNITLRDSPFWTLHPYD CKNITIKNVTILTLARIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 19 | 253 | 235 | 9.3E-135 | – | |
| PANTHER | 19 | 253 | 235 | 9.3E-135 | – | |
| Phobius | 21 | 47 | 27 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 48 | 258 | 211 | - | – | |
| Gene3D | 61 | 256 | 196 | 7.4E-52 | ||
| SUPERFAMILY | 65 | 253 | 189 | 1.32E-46 | ||
| Pfam | 169 | 253 | 85 | 1.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0322800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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