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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0324700 |
| Transcript ID | LotjaGi4g1v0324700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G06000.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000; TrEMBL-Plants: tr|I1MSA3|I1MSA3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0324700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70301148..70305473) extracted from Lotus japonicus Gifu genome v1.2.
GGGACTAAAACCCTCGTCTCTGTCCAGAGCAGCAACTACCAACTAAGCACTGCAAAACCCATAAAAAACCCTTTCCATGC GAATCCTTTGTCACTTGGGACGTTCGACAACCTCAAACATGTCATCTTTCTTCTATTTCGGTTGATGGGGTTTTGATTTT AATGTGTCCATGTTCCATGTTTTGACCATCCATCAATTTTCCTTCATTTCAAGGGTCATGAAGCAAGAATTCACTAGTCT TTGAAGAGGGTCATGCTTTCATTTCTACATGGCATCACCAACCTGATGACTCTCTCACTCTTCACGAGGATTCAAGCTTC CAAGATAGCACTTGCTCGTTGCTTCACTCTTACTCAGTTAACATATGCTTCCTGTGATAAAGGGTCAATCACAAAACCTG AAGCTTGGTTTGTCAAGATTGTTTCTACTCTCTTTCTTCACTCAAACTCATTGGATACTAGAGTTTTGAGTTATTTTGGT AAGCATTTAACTCCTTCACTTGTTTTAGAGGTTGTTAAAAGGCTAAACAATCCCATTTTGGGTTTCAAGTTCTTTCAGTT TACCAGGGAGAAGTTGAATGTGCATCATTCATTTTGGACTTATAATATGCTTTTGAGGTCCCTATGTCAAAAGGGTCTCC ACAGTTCAGCAAAACTGCTATATGATTGTATGAGGTTTGATGGGAAGTTGCCTGATAGTAGGTTGTTGGGGTTTTTGGTT TCTTCTTTTGCATTGGCTGATAGGCTTGATGTTTCCAAGGAATTACTTGCTGAAGCTCAGTGCAATAAGGTTCAAGTAAA TGCTGTTGTTTATGATAACTTATTGAGTGTCTTGGTAAAACATAATAAGTTAGATGATGCCATTTGTCTATTTAGGGAGC TTATGAAATCACATTCGCATCTTGAGACTTCCACGTTTAACGTTTTAATGGGAGGTTTGTGTAGTGCCGGCGATGTTGAT GAAGCGTTTAAGTTTCTCAATGGTATGAGAAGTTTTGGTTGTTCCCCTGATATAGTTACATATAACACTCTTCTACATGG TTTGTGTAGAATTAAGGAGGTCGATAGAGCAAGAGATTTACTAAAAGAAGTTGGTTTAAAAAGTAAGTTTTCCCCTAATG TTAGAAGTTATACAACAGTGATATCAGGTTATTGCAAATTGAGTAAGATGAAGGAGGCGTCTTCTCTTTTTGATGAAATG GATAGATCCGGAACTAAGCCTAATGCATTTACTTTTAATTCCCTTATTGATGGCTTTGTAAAAGTAGGTAACATGGATTC TGCACTAGGTATCTACAAGAAGATGCTCTTCCACGGTTGTCCTCCTGATGTTGTTACTTTCACTTCCCTAATTGAGGGTT ATTGCCGAGTTGGGAAGGTTAACTATGGTTTGGACCTGTGGCACGAAATGAATACGAGAAATATTTCCGCAAGTTTGCAT ACTTTCTCTGTTCTTATCAGTTATCTGTGCAAGAGCAATAGACTACAAGAAGCTCGTGACCTTTTGAGACAATTGAAGCG GACTGACATTGTTCCACAGCCTTCTATCTACAATCATGTCATTGACGGATATTGTAAATCTGGGAATGTTGATGAGGCTA ATGCAATTGTAGTAGAAATGGAGGAGAAATGCAAACCTGATAAGTTTACATTTACTATTCTTATTGCTGGGCATTGTATG AAAGGAAGAGCACCTGATGCAATTGTCATCTTTTACAAAATGTTGGCAACTGGTTGTTCCCCAGATGAAATAACTGTTAG AATTTTAAGTTCCTGTCTTTTGAAGTCTGGAATGCCTGGTGAGGCTGCCCGCATTAAGGAAAGCCTACATGAGAACCAGG GAGATTCACTTAAAAAATCTTATTATGAAGGTACAAATTCAGATGTGCCATTTTCGGTTCATTAAATCACTGCCGCAAAT CAGTGATTGGACATTTCCCTGGAAGAATACATTCATCATGCAGCGCTCAATTATGTTCTGGAGATTATCAGAAAGGGAAT TTGAAATTCCAATTCCTCCTAAATTTTGCTGATCTTATTGGAACTTGCAGGTAGTATGCTGTCTTCTTGTTACCTTTTTT TCAACTGACTTTGATTTTTTGTTTCTTATGTCAAATGTCAAATTTGTTCTATTTCTAAATATTCCTTTTTTATTATGCAG TTTTAGTTGATTTTCTTGTTCATTTCTGAATGTATTACTTTTAGTGCTATGAGTATATTGAATTGCACCTTTATGAAAAG GACTGACTGAAATATCGAATGTTATGTAATGGAAATTTCATAGTTAAAAATAATGCTGAAAAAATATAGGAAGATTGTTA CTGAGGATTTTCAGCAACAGAAACATTTCAAAACGGGTGGGAAGGAAACTTGTAGGTTTAAAAAATGGTATTAATACAAG AGAGGTGATTGGTTGATGGAATTCTACGATTCTAGAATCTTGAGCATTGATCTAACTCAGACTTTTGAATAAATATTTTC TGCATATTGGGTGAAACTTTTTCTTTGGTTATATCTTAGTCCACTTTTCTTTTCTGAAAAACAAATAGCAACTTATATCA GGATAAAATACATTTTTTGCAACATTTTCTTCATTTTCTTCTCTTTTTCGAAACAGAATCCTGGAATGTTCTTTGTTCTA TGAGATCATGCTCCTTTCGGGATTGGAAAAGGGCTGTTTTTCTCAGAACTCATTTCAGTTTTTACCCTTTGTTATCATGT TGACTGAGCACAACAAAAAATTTCTTACATTCTGTCTATGTCTGCTATGTTATCATTCCCTACAGTTGAGATCTTGAGAT AACCTCAACTCTTGTTCCCTTTGTCATTAAAAATTGATCACAAAATAGGCAATCCCTGCTCGAGGGACTCGTCAATTGGC TTAGTGTTCAACATAGTAAATTCCCTGGGAAGCATTAGGGGTCTGGATATCATGGGACAATTTTTTTTTTGGGTGCACCA CAGGTATTCTGTGTGGGAAACATTCTTGTTCAAGCCGGGAACATTCACATTAGAGTCGGGCTAGCTCTCCCGGCAGGGTT TTTTCCGATTTAACAGACTCGTATCCGAGACCTAGCATAGAGAGATATCATGGGACTATGCATATACATGGAATTTCTAG GCCTAAAGTAGCAAAAAAAAATTCATGTATCATGCATATATTGTCAGAGTGACCACGTTTTCTTCATTGCCCTAAATTAC ACCTAGTGTGCCTGTCATGCAAATAAATTTTCTACTACCATTTGGAAGAAATTCTCCAAATTCTTTTTATCCCGTACTAT CAAGTGGCATCGTGCACCTGATATAGAAATTCTCTGATAGAATGTTACTCACATTGAGAACTGTATAATAGAAGCTGAAT TAAGTCTCTAACTTCAGGGCATCAAAATTTGATGATTTAAGTATTTGTAGTATTAGTTGTTTCTTTTTTCACTGGTAAGC CTGGCATAGATTACTTAAACTTCTACCATGACCTCCCAACTCCAGGGGGAAAAAGAAGCTCTAAAACACTAATGGCATGT GCTTTTATGGTTTTTCAGGTTCATGGACAATGCGGGGTCTATTAGATTTTGGTAGTACTTGGAATGGCAGGTGTCATGCT TGACAATTCTCTGACATAACACATATTGACAATGAGTTTACTTGGTAGTTAACAAGCGACGCTTCCTGAATTGCATTTTG GATATATGGTTTAACTTACCACCCCTAGAGCACAAAGCTTGCTGGATGTCACTAATGGTAATGAGACAAGGTTTGTCATG TTGAATGAGAATTCATGTTTAAAGTTCAACTTATCATGTGGCAAACCATTGGGTTTAAGTAATGCGTTGGGATGAACTAG GTTTTGCACCACTTTTTATTGTCCAACCTTTTTTGGCTAACATGGTCTTAGCGAATAGAATTGTAACCTCTTATCAGATG TCACTATTGAATGGATGATAAATGACTCTCAGGGATTCCCCTGGTCTGGAACCATGTATATTTCTTCTTGAGGTGATCTA GTGCTAATGAGGTAGGAATGACCCCCAAGGAGTATTGACCCTTTTTGTGAAGTTGCTGATTATATTTAAGAATGTATATA CTATGAAGCTATATAGGTTGCATTTTAGCTTATGGTGTATATGTTTTCACGGGTCGTTTCTACTGAGATGTGAACTGACT AGCTACTCTGAACTCCAAATAGCTAAATATATGTACTTTTTGGTTAGCATATCGGCTTTCCTTTAGATGATGGTTAGTTC GTGAACAAGTAGTGTCCACTTGTCCAGCATCTTCTCTTTTTTAGGTGATGATTTGTAAAAAAATTAAAATTAACAATTTG AGTTTT
CDS sequence (LotjaGi4g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCATTTCTACATGGCATCACCAACCTGATGACTCTCTCACTCTTCACGAGGATTCAAGCTTCCAAGATAGCACT TGCTCGTTGCTTCACTCTTACTCAGTTAACATATGCTTCCTGTGATAAAGGGTCAATCACAAAACCTGAAGCTTGGTTTG TCAAGATTGTTTCTACTCTCTTTCTTCACTCAAACTCATTGGATACTAGAGTTTTGAGTTATTTTGGTAAGCATTTAACT CCTTCACTTGTTTTAGAGGTTGTTAAAAGGCTAAACAATCCCATTTTGGGTTTCAAGTTCTTTCAGTTTACCAGGGAGAA GTTGAATGTGCATCATTCATTTTGGACTTATAATATGCTTTTGAGGTCCCTATGTCAAAAGGGTCTCCACAGTTCAGCAA AACTGCTATATGATTGTATGAGGTTTGATGGGAAGTTGCCTGATAGTAGGTTGTTGGGGTTTTTGGTTTCTTCTTTTGCA TTGGCTGATAGGCTTGATGTTTCCAAGGAATTACTTGCTGAAGCTCAGTGCAATAAGGTTCAAGTAAATGCTGTTGTTTA TGATAACTTATTGAGTGTCTTGGTAAAACATAATAAGTTAGATGATGCCATTTGTCTATTTAGGGAGCTTATGAAATCAC ATTCGCATCTTGAGACTTCCACGTTTAACGTTTTAATGGGAGGTTTGTGTAGTGCCGGCGATGTTGATGAAGCGTTTAAG TTTCTCAATGGTATGAGAAGTTTTGGTTGTTCCCCTGATATAGTTACATATAACACTCTTCTACATGGTTTGTGTAGAAT TAAGGAGGTCGATAGAGCAAGAGATTTACTAAAAGAAGTTGGTTTAAAAAGTAAGTTTTCCCCTAATGTTAGAAGTTATA CAACAGTGATATCAGGTTATTGCAAATTGAGTAAGATGAAGGAGGCGTCTTCTCTTTTTGATGAAATGGATAGATCCGGA ACTAAGCCTAATGCATTTACTTTTAATTCCCTTATTGATGGCTTTGTAAAAGTAGGTAACATGGATTCTGCACTAGGTAT CTACAAGAAGATGCTCTTCCACGGTTGTCCTCCTGATGTTGTTACTTTCACTTCCCTAATTGAGGGTTATTGCCGAGTTG GGAAGGTTAACTATGGTTTGGACCTGTGGCACGAAATGAATACGAGAAATATTTCCGCAAGTTTGCATACTTTCTCTGTT CTTATCAGTTATCTGTGCAAGAGCAATAGACTACAAGAAGCTCGTGACCTTTTGAGACAATTGAAGCGGACTGACATTGT TCCACAGCCTTCTATCTACAATCATGTCATTGACGGATATTGTAAATCTGGGAATGTTGATGAGGCTAATGCAATTGTAG TAGAAATGGAGGAGAAATGCAAACCTGATAAGTTTACATTTACTATTCTTATTGCTGGGCATTGTATGAAAGGAAGAGCA CCTGATGCAATTGTCATCTTTTACAAAATGTTGGCAACTGGTTGTTCCCCAGATGAAATAACTGTTAGAATTTTAAGTTC CTGTCTTTTGAAGTCTGGAATGCCTGGTGAGGCTGCCCGCATTAAGGAAAGCCTACATGAGAACCAGGGAGATTCACTTA AAAAATCTTATTATGAAGGTACAAATTCAGATGTGCCATTTTCGGTTCATTAA
Protein sequence (LotjaGi4g1v0324700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSFLHGITNLMTLSLFTRIQASKIALARCFTLTQLTYASCDKGSITKPEAWFVKIVSTLFLHSNSLDTRVLSYFGKHLT PSLVLEVVKRLNNPILGFKFFQFTREKLNVHHSFWTYNMLLRSLCQKGLHSSAKLLYDCMRFDGKLPDSRLLGFLVSSFA LADRLDVSKELLAEAQCNKVQVNAVVYDNLLSVLVKHNKLDDAICLFRELMKSHSHLETSTFNVLMGGLCSAGDVDEAFK FLNGMRSFGCSPDIVTYNTLLHGLCRIKEVDRARDLLKEVGLKSKFSPNVRSYTTVISGYCKLSKMKEASSLFDEMDRSG TKPNAFTFNSLIDGFVKVGNMDSALGIYKKMLFHGCPPDVVTFTSLIEGYCRVGKVNYGLDLWHEMNTRNISASLHTFSV LISYLCKSNRLQEARDLLRQLKRTDIVPQPSIYNHVIDGYCKSGNVDEANAIVVEMEEKCKPDKFTFTILIAGHCMKGRA PDAIVIFYKMLATGCSPDEITVRILSSCLLKSGMPGEAARIKESLHENQGDSLKKSYYEGTNSDVPFSVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 550 | 528 | - | – | |
| Gene3D | 76 | 200 | 125 | 1.3E-14 | ||
| PANTHER | 110 | 337 | 228 | 1.2E-119 | – | |
| PANTHER | 110 | 337 | 228 | 1.2E-119 | – | |
| ProSiteProfiles | 113 | 147 | 35 | 9.679 | ||
| TIGRFAM | 116 | 148 | 33 | 3.6E-4 | ||
| Pfam | 116 | 144 | 29 | 3.8E-4 | ||
| ProSiteProfiles | 148 | 182 | 35 | 5.305 | ||
| ProSiteProfiles | 183 | 217 | 35 | 8.747 | ||
| TIGRFAM | 185 | 213 | 29 | 0.0017 | ||
| Pfam | 185 | 212 | 28 | 0.023 | ||
| Gene3D | 210 | 281 | 72 | 8.2E-21 | ||
| ProSiteProfiles | 218 | 252 | 35 | 12.474 | ||
| Pfam | 219 | 266 | 48 | 3.4E-16 | ||
| TIGRFAM | 221 | 254 | 34 | 1.9E-10 | ||
| ProSiteProfiles | 253 | 288 | 36 | 10.38 | ||
| TIGRFAM | 255 | 290 | 36 | 2.7E-7 | ||
| PANTHER | 271 | 403 | 133 | 1.2E-119 | – | |
| PANTHER | 271 | 403 | 133 | 1.2E-119 | – | |
| Gene3D | 282 | 388 | 107 | 2.7E-33 | ||
| Pfam | 288 | 337 | 50 | 4.0E-17 | ||
| ProSiteProfiles | 289 | 323 | 35 | 13.088 | ||
| TIGRFAM | 292 | 325 | 34 | 8.9E-10 | ||
| ProSiteProfiles | 324 | 358 | 35 | 12.814 | ||
| TIGRFAM | 326 | 360 | 35 | 1.3E-9 | ||
| PANTHER | 334 | 515 | 182 | 1.2E-119 | – | |
| PANTHER | 334 | 515 | 182 | 1.2E-119 | – | |
| Pfam | 358 | 407 | 50 | 2.3E-13 | ||
| ProSiteProfiles | 359 | 393 | 35 | 11.433 | ||
| TIGRFAM | 361 | 392 | 32 | 1.8E-6 | ||
| Gene3D | 389 | 456 | 68 | 1.4E-16 | ||
| ProSiteProfiles | 394 | 428 | 35 | 11.027 | ||
| TIGRFAM | 396 | 428 | 33 | 4.3E-6 | ||
| ProSiteProfiles | 429 | 459 | 31 | 10.128 | ||
| TIGRFAM | 432 | 462 | 31 | 9.3E-7 | ||
| Pfam | 432 | 475 | 44 | 2.7E-12 | ||
| Gene3D | 457 | 530 | 74 | 6.4E-15 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.907 | ||
| TIGRFAM | 465 | 499 | 35 | 1.4E-6 | ||
| ProSiteProfiles | 498 | 528 | 31 | 6.106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0324700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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