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LotjaGi4g1v0328300.1

Overview

Field Value
Gene ID LotjaGi4g1v0328300
Transcript ID LotjaGi4g1v0328300.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger RNA-binding protein; TAIR: AT2G19385.1 zinc ion binding protein; Swiss-Prot: sp|O64571|UBA1C_ARATH UBP1-associated proteins 1C; TrEMBL-Plants: tr|V7CCJ3|V7CCJ3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0328300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:70676292..70679451) extracted from Lotus japonicus Gifu genome v1.2.

AATGTGTCCACCATCCTCAATAAACTAGTTAGACCAAGTGAAGGGAGAAAGACAAGTAGCTGCCTGGCATAAAACGCAAA ACCCTAGCCGGCTTAAACCCCAAATTGCAAAACCAGAACTATCATTCTCTCTACCATGGTTTGGTTCCAATGCGAAGATT GTGGCGACAACCTCAAAAAGCCCAAGTTACCTAGCCACTTCCGAACATGTTCCGCTTACAAGGTTCTAATTCAATCTCTC TATTAATCAATCTTCATTCACTTCACAAGCTGATCCAATTCTCATTTTTTTGATGTTATGCAGTTGTCGTGCATTGACTG TGGCCAAATTTTCGGGCGTGACACCGTTCAGGATCACACTCAGTGCATTACAGAAGCAGTGCGTCTCTCATTCTCACTTT CTTCTTAATGGGTCTCGCTTTTATTCATTCTGATTTGGGAATGCTGCATGGGTTTTCAATTTTCATGTTTTAACACTTCT TCGAGTGTAAATTGACGATATTTATGAATTTTGTGAAAATGGGTACCTGTATTCATGGATGGATGGAGTTTACTCAGTGC TAGTTCTTTGATTTGCTCAATGTGGCCAGGGTAGCTTCTTCAGAGTATTATAATTTCTTTATCATATCATTGTTTTCCTC AAGAATATTCCTTATAATCTGGTTTTTGATTGATGTCAATTGGCGTAGTGTTATCCACGTAGCCGACCTCAGTTAGTGGG ATAAGGCTTTTGTTGTTGTTGTTGTTGTTGTATCATTGTTCTCCTCAAGTTGAGATTGTTTACTTACCTTTTTCAATACC TTAAGGTCTTCTACTCATGTCTGCTAATGGGCATAATTTTTTTTTCTCATGTCTCACTTTTTAGCATGGCTACATTGTAT TCTTTTGGTTTACCTGTACTTTTTCCAGCATAATGAATTTTCATGTAAGTTTTTAGAAATACGTAACCATCTTATTTCCC TCAGCCAATTTTTTTTACTTTGATTTCCAGGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTGTGAACAATGCAGCTGC CAAGCCTAACAAAGATAGCAAGCAAAAGCCTGAAGTTGATATTAATGTGGGATTATCTGAACGGCCTCCATGGTTCTGTA GGTATGTACCTCTATAGGATACACTTCCATGGTAGTCAGAGTGCTCATATTGAGATTAAATGCCAATCAAGATGCTGCAT TTTATGTTTTCAAAATGTCATAGGCGAGAAACATAATTATCATTGTCCACATATCCTGTTCAGATGGGAATTAAACTTCA AAGTCCTCACTCCTTACATTTGAGTTGTCTTATCATGTCTATGTTTCATGGGATCATCAAGATGACAAGATAATCGTTCA AACCTTTTAATTTTGTGTAATGTAAACATAAGATGTAAAAAACTAGCCGTGTGTATTGTAGAAGTTTCAAGGGTACTGAG TTGAATGTGCAGCTTTTACCTATTGTTTCTGTTGAAGCATGTAAGGGGGCAGGTTTGATGTTTAAGTATAATACAATTCA TATAGTTGCACCATGATTTTTTTGAACTTATAGATTCTTGAGTAATATTTCTTTCTAATAGGATACTTTCAGCTGCTACT GATATTAACTTCAACTGATTAGTAGCCTGCAGACCCTTTTGGATAGAGGTCTTTGTGAAAGTGCATACTAGTAAACAGTT TATGATTGTGAGGTTATGATATTGAGTTTCAAGTGCCAAAAACAGCTTATTATAGAGACTGAAACTATTTACAGTAAAAA AGTTGGAGAGGAACTGTGCTTAGTCTTGATGCCCAAAATCTTCATTCAGAAAGAATTTCTCTTAGTTTTTCTGTCACCCT CATGATTATCTGATTTATTACGACGTGGTTGTGACTTTGCAGTCTTTGCAATACAAAAGCTACAAGTAAGCAAGCGCTTC TTCTACATGCGGATGGAAAGAAACACAGGGTAAAAGCCCGAGCATTCCTTGCTTCAAAGCAACAGCCAGTCCAGGCTGAC AAATCTGTCCCTGATGCAAAGGCTGCAGTGGAGACTGCTCCTAATGATGAGGCAAGAGATGACAAAAGTGCAGAGCAGCC GAAATTGCAAGAGTCTTCTAAACTAAATGACTTGAAAGCAGTGAATGAAGTTTCTTCCGAAAAGAAAAAGAGGAAACTTG GAGCATTGGAGGGTGAACTCACTAAGAAAAGCAGGAATGACACATCAGTTGACATGGGAAATGGGGAAGTAATTCAGGGT GACAAGGTCACGGGGGAGGGCAACTTGAAAAAAGAAGGGAAATCCGAACCTAACGGTACAAGTGCTGTCAAAAGTAAAAT CAAATGGAAAAAGTTTATCAAATCAGCCTTGAAATCCGTAAGTGTTTAGAATTTCGGAATGTTATAGTCTCTTGATTTAT GCTTAATGTTATCTATGATGTGGATTGGATCATATAGAGTCAATGGCTTTTAAGATGGAGGCAATTATAGATTCTGCATT CATACATATTAGTATTAATGAGATTGCTAAGTTGGTCTATGTATGCATCTTATTTTCATACAACACTTAAATGCGCTTAT TGTTTTGCTTGTGACAGCATCCTGATGGAACTTTGAAGATGAAGAAACTGAGAAAAGCTGTCTTCAAAGCACTCCAGGAG TCTGGGATTGTAGTCAATGAAACTGAATTGAGTGAGACACTTGAGCAGAAGGTAAGGCCATCAACTAGGTTGTGTTTCTG TTAATTTGCCCTTTAATAATACTATTATGGATTTCCTTATGAAATGTGTGTGCTTACAGATCAATTCCAGCTCCAGATTT GCAATTGAGAACAAGTATGTGCGATTGGTGGCCAAAGATTGAACACTGTTGTTAGAGTCATCATGACTGAGTCCATTGAA TTTTTTGTATTTCTCTTACTATTTGGTAAACATTCATCCCTATAAAATATCTCCTTATAGAAAAAAAATTGTGAACAAAT ACATTTGTTGCTTTATGCAAAAGTTCAATTACTATCTTGTCAAGGCAGATCCGTTTGGTCCTGAATGACAAGAAAGAGTT ATAAAAATTTGCAAAACACAGATGTTAAGTGATCATAGATGCTTAGATGAGTTGGTCATTCGAGGGGTACTTTTCAATTG TATGACACAAGTTTCAGTTAAATGAATTATTACATTTGAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0328300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTGGTTCCAATGCGAAGATTGTGGCGACAACCTCAAAAAGCCCAAGTTACCTAGCCACTTCCGAACATGTTCCGC TTACAAGTTGTCGTGCATTGACTGTGGCCAAATTTTCGGGCGTGACACCGTTCAGGATCACACTCAGTGCATTACAGAAG CAGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTGTGAACAATGCAGCTGCCAAGCCTAACAAAGATAGCAAGCAAAAG CCTGAAGTTGATATTAATGTGGGATTATCTGAACGGCCTCCATGGTTCTGTAGTCTTTGCAATACAAAAGCTACAAGTAA GCAAGCGCTTCTTCTACATGCGGATGGAAAGAAACACAGGGTAAAAGCCCGAGCATTCCTTGCTTCAAAGCAACAGCCAG TCCAGGCTGACAAATCTGTCCCTGATGCAAAGGCTGCAGTGGAGACTGCTCCTAATGATGAGGCAAGAGATGACAAAAGT GCAGAGCAGCCGAAATTGCAAGAGTCTTCTAAACTAAATGACTTGAAAGCAGTGAATGAAGTTTCTTCCGAAAAGAAAAA GAGGAAACTTGGAGCATTGGAGGGTGAACTCACTAAGAAAAGCAGGAATGACACATCAGTTGACATGGGAAATGGGGAAG TAATTCAGGGTGACAAGGTCACGGGGGAGGGCAACTTGAAAAAAGAAGGGAAATCCGAACCTAACGGTACAAGTGCTGTC AAAAGTAAAATCAAATGGAAAAAGTTTATCAAATCAGCCTTGAAATCCCATCCTGATGGAACTTTGAAGATGAAGAAACT GAGAAAAGCTGTCTTCAAAGCACTCCAGGAGTCTGGGATTGTAGTCAATGAAACTGAATTGAGTGAGACACTTGAGCAGA AGATCAATTCCAGCTCCAGATTTGCAATTGAGAACAAGTATGTGCGATTGGTGGCCAAAGATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0328300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVWFQCEDCGDNLKKPKLPSHFRTCSAYKLSCIDCGQIFGRDTVQDHTQCITEAEKYGPKGQGKTVNNAAAKPNKDSKQK PEVDINVGLSERPPWFCSLCNTKATSKQALLLHADGKKHRVKARAFLASKQQPVQADKSVPDAKAAVETAPNDEARDDKS AEQPKLQESSKLNDLKAVNEVSSEKKKRKLGALEGELTKKSRNDTSVDMGNGEVIQGDKVTGEGNLKKEGKSEPNGTSAV KSKIKWKKFIKSALKSHPDGTLKMKKLRKAVFKALQESGIVVNETELSETLEQKINSSSRFAIENKYVRLVAKD
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13100
1 312 312 4.3E-68
IPR039999
SUPERFAMILY
SSF57667
1 26 26 8.09E-8
IPR036236
Gene3D
G3DSA:2.20.28.110
1 50 50 9.1E-16 –
ProSiteProfiles
PS51804
1 26 26 11.992 –
ProSiteProfiles
PS51804
27 51 25 10.754 –
Pfam
PF08790
30 57 28 1.1E-13
IPR014898
SUPERFAMILY
SSF57667
30 58 29 1.15E-8
IPR036236
MobiDBLite
mobidb-lite
60 82 23 - –
SUPERFAMILY
SSF57667
83 128 46 9.92E-8
IPR036236
Gene3D
G3DSA:3.30.160.60
89 129 41 1.3E-7 –
SMART
SM00451
92 126 35 0.0014
IPR003604
Pfam
PF12874
95 119 25 5.5E-6 –
MobiDBLite
mobidb-lite
128 240 113 - –
MobiDBLite
mobidb-lite
149 165 17 - –
MobiDBLite
mobidb-lite
178 203 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0328300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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