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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0330200 |
| Transcript ID | LotjaGi4g1v0330200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme, E2; TAIR: AT3G17000.1 ubiquitin-conjugating enzyme 32; Swiss-Prot: sp|Q9LSP7|UBC32_ARATH Ubiquitin-conjugating enzyme E2 32; TrEMBL-Plants: tr|I3TA67|I3TA67_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0330200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70953965..70957436) extracted from Lotus japonicus Gifu genome v1.2.
GGTGCCCACTAGGGTGGACCATTTTATTTTTGGTCCACCGGTGCACCAGGGATATATTCGACTTTGCATCAAGGGTACTA CAGACTTTATCCCTTTTTCTCCCTCTTCCTCCCACTTTCTTCACCCTCAGGCCTTTTTTTTTTTGTTCAAACACAGACCC TTCTTCATCAGACTTTATCCCACAAATTGATTGTTGCTTTCATGTTAAACCATGAAAACTTTACTTTATGGTAAGTCAAG TAAAGTGTTTGACTATGACAAGCTTCTCCCTCTTCCTCCGCTGCAGCGTTGCTCTCCCATCCTTCCTCTTTTCCCACTTG TGTTCCATCAAAACCACCATGGCTGTAGTTGGGAGAAAACTCAAAAATGAGACCCAGAAAATCAAAAGCTAGCACAGATA TATCACCCTCTTCTCTTTAAAAGTCAAAATCAAAAGTGCCAAAAATCAAAAGATCACACAGATCTGTCTTCCATCCTTTC TTCTGATTCTTTTTCTTCTTCCATCTTCTCTTTGCTAGCACAGATCAATGCATGTCATGTCTATATTTTTTGTGGGTTTT AACTAAAAAAGGTTCAATCTTTCTTCTCCCTTGTTGTTGTTTCTGGGTTTTTGAGTTTTGTCTTTCTTGTTAAATGTCTT GCCTTTGTTTTTTCAACCAAGAAAGTTGATTTTTTCTTCTCTGGTTCATATTTCTGGGTTTTGTAAAAGGAAGACGGAAG TGTTGCAAATTAAAGAGGGTATGGAGGTGAAGGTGGGAAGGTAGAGGGTGCTGGAGAAGGAAACGCCGGTGAGGTTGAAG GTAGTAGTGATACGGCCGGCGATGGAGCAAGAAACGTCGAAGCTAGGAGAAGGATGTGACAGAGCTGGGAGAAGAAGAAC CAGTAAGAGAGGAGGGGTTGTTTGTCAATTTATGTTTTTGCCCTTTTTCAATCCAACAAATCCTGACCATCTAATAAAAT AATATTTCAAGATTCTCAGATCTAATGGTAGTTAGTCATGGTGCACCGGTGGACCAAAAAAAAAGTGGTCCACCCTAGTG GACACATTTTTTTAAATAACTTTTCTAGACTAGTAGACTGAATGAATAAACACATCAGCTCCACCTCATCCAATAAAAGA CAGACACGTAACCAAACACGCATATCGTGACGCGTCCACCAAATGCCTACATTCCCTTCTCACCTATATTCTCCGTTCCC ACTTCTGATATTTTCTCCGCATCAACACCACTACACACACAACAACAATGCATATTTCTCTATAATTCCACCACCGTTCA CTGCTCGCAGTTCCGTTTTCACCGCCGCAACAACCACCGGGTCGCTTTGATTCCATCGAATTTCAATCTTCGCAGCGATG GCGGACAAGTACAACATGAAGAACCCCGCCGTGAAGCGGATTCTCCAGGAGGTCAAGGAGATGCAATCGAACCCTTCCGA TGATTTCATGAGCCTCCCTCTCGAGGTTCTTCAACTTCCATTTTCGTTTTCCCTTCGTTTTCTTAATCTTAGGGTTTTCA ATTTCATTTCGCGATCTCTCATCAGCTCACACCATCTTGCTTTCTGTTGATGTTGTTTTCAGGAGAATATATTTGAATGG CAATTTGCAATTAGGGGACCTGGTGATACTGAATTTGAGGGTGGTATTTTTCATGGAAGGATCCAGCTGCCTGCGGAATA TCCATTCAAACCTCCTTCATTCATGTTGTTGACAGTAAGATCTTACCCTCTAGATTAAGTAGATTTTGGTATTAATATGT TGATCTCAGGGTTGTTAATGGCGGATAGCGTAGCAGCGGCAAGCCCAAAAAATGCTATTTCGAGCTCTTAGTGGAGTAGC GGTGAACCCACAGAGCACTACGCTATAGTGCTATTGCGCCGCTATAGCGCGCTATTAACAAGCCTGGTTGATCTGCATAT ATTTTAGGCGCTTCTGTTTCTTGAATTGTCTTGTTTTAATTGTTGAAGAAATCTGAGTTCATACATGCTTATAAATTTCA CTGTTATGCTGTCAGCCTAATGGTCGTTTTGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCATCCTGAGCA TTGGCAACCATCATGGAGTGGTGAGTAGTTACTTTCCCTTTTCACTCTTGTTGCACTTAAAAGTTAAAAGTATATTCAGT TCTGTAGAATTCGAATTCGTCTGTGTTGCTTTCATCATTGACATTATCCTTTCCCTCCCAATATAGTTCGACTTTTATAT TGTCCTGTGATGTTTGTCAGTTAAAACCGTTAATTTATAATCTTCGAAGCTACATGGACGAAGAATCTCACTAATTAAGC TGATGTAAATTTCTGTTGGCAGTAAGGACTGCTCTCGTTGCCCTGATTGCTTTCATGCCCACCAACCCAAATGGTGCATT GGGTTCATTAGACTACAAGAAAGAAGAGAGGCGCGCCTTAGCCATCAAGTCCCGTGAAGCATCTCCCAAATTTGGGACTC CTGAACGTCAAAGACTGATTGATGAGGTAAAATGTTGCTCATTGTTTTTTCCCCAGTGCATGTTTTGTCATATCTTGTGT TGATTGTACTAGGTAAACTGTTGCTTATTGTTATTTTTTCCGGAGCATTTTTTTGATAATGTCTTGTCGTGATTGTTTTC CCAGATACATGAGTATATGCTAAGCAAGGCACCCCCTGTCCCTCAAGTTAGCCCCACACAGGCTTCTGAAGAACAACCCC CAATTGAGGAGGACCAGACCCAGGTTCAGTTGCATAATCCTGAGGCTTTGCCTGCAGGAGAGGTGATTCCAGATCAATCA GTTGACAGAATAATTGAAGAACAAGAAGTCACCGTCAATGCTAATCCTAACCCTTCTGAAGTTGAAGCTTCAACAGAGAC TCCATCTAATGTCGTCTCAAGCAATCAGTTGCTCCAAAACTCGGAGACAACCAGGGGTCAAAATCTGAAACCAGAGACAA GGGTTCAAAAACCTGATGATCGATTATTCACATGGGCTGCTATTGGACTTACCATCGCAATTGTAGTCCTTTTGCTGAAA AAGTTCATTAAATCTACAGAACATGGTGCAGTTTTCATGGATGGATCTTAAATGGGTTCCTTGCTCATATTGGCTTCAAA GTTTAATACTACTAGCCCCATGGAGTCAAACCTAGCTCTTCTAACCTGAAGTGATATTTGTCGATACTTCGTATGTATTT ATGTTCTGTAATTATGGTTATATAAGAATAGTACAGCTTTTAAAAGTTTCTTAAATGAACTCCACTCTATTTAGGGCATT TAGAGCCCAAAACTTTTGAAAATCAACCAATGCTACCTATGGAAATTGGTTCTTTATGTAGGTTGCTCTCCAAAGGGAAT AGAAACTCTTATCTTTTTTAGCTTCTCAAAGTTTAGTAACTACTGATATAAAGAGCAAATAAACTACCGATGGATATACT TTTATAACATAGAATATTTTGATAGTTTTCCG
CDS sequence (LotjaGi4g1v0330200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGACAAGTACAACATGAAGAACCCCGCCGTGAAGCGGATTCTCCAGGAGGTCAAGGAGATGCAATCGAACCCTTC CGATGATTTCATGAGCCTCCCTCTCGAGGAGAATATATTTGAATGGCAATTTGCAATTAGGGGACCTGGTGATACTGAAT TTGAGGGTGGTATTTTTCATGGAAGGATCCAGCTGCCTGCGGAATATCCATTCAAACCTCCTTCATTCATGTTGTTGACA CCTAATGGTCGTTTTGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCATCCTGAGCATTGGCAACCATCATG GAGTGTAAGGACTGCTCTCGTTGCCCTGATTGCTTTCATGCCCACCAACCCAAATGGTGCATTGGGTTCATTAGACTACA AGAAAGAAGAGAGGCGCGCCTTAGCCATCAAGTCCCGTGAAGCATCTCCCAAATTTGGGACTCCTGAACGTCAAAGACTG ATTGATGAGATACATGAGTATATGCTAAGCAAGGCACCCCCTGTCCCTCAAGTTAGCCCCACACAGGCTTCTGAAGAACA ACCCCCAATTGAGGAGGACCAGACCCAGGTTCAGTTGCATAATCCTGAGGCTTTGCCTGCAGGAGAGGTGATTCCAGATC AATCAGTTGACAGAATAATTGAAGAACAAGAAGTCACCGTCAATGCTAATCCTAACCCTTCTGAAGTTGAAGCTTCAACA GAGACTCCATCTAATGTCGTCTCAAGCAATCAGTTGCTCCAAAACTCGGAGACAACCAGGGGTCAAAATCTGAAACCAGA GACAAGGGTTCAAAAACCTGATGATCGATTATTCACATGGGCTGCTATTGGACTTACCATCGCAATTGTAGTCCTTTTGC TGAAAAAGTTCATTAAATCTACAGAACATGGTGCAGTTTTCATGGATGGATCTTAA
Protein sequence (LotjaGi4g1v0330200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADKYNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIFHGRIQLPAEYPFKPPSFMLLT PNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKSREASPKFGTPERQRL IDEIHEYMLSKAPPVPQVSPTQASEEQPPIEEDQTQVQLHNPEALPAGEVIPDQSVDRIIEEQEVTVNANPNPSEVEAST ETPSNVVSSNQLLQNSETTRGQNLKPETRVQKPDDRLFTWAAIGLTIAIVVLLLKKFIKSTEHGAVFMDGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 276 | 276 | - | – | |
| Gene3D | 2 | 180 | 179 | 4.1E-59 | ||
| PANTHER | 8 | 218 | 211 | 1.4E-110 | – | |
| PANTHER | 8 | 218 | 211 | 1.4E-110 | – | |
| SUPERFAMILY | 11 | 134 | 124 | 6.16E-38 | ||
| CDD | 12 | 151 | 140 | 7.52081E-45 | ||
| SMART | 13 | 173 | 161 | 2.2E-28 | – | |
| ProSiteProfiles | 13 | 125 | 113 | 24.232 | ||
| Pfam | 14 | 125 | 112 | 1.2E-20 | ||
| MobiDBLite | 172 | 195 | 24 | - | – | |
| MobiDBLite | 175 | 195 | 21 | - | – | |
| MobiDBLite | 227 | 266 | 40 | - | – | |
| MobiDBLite | 227 | 268 | 42 | - | – | |
| TMHMM | 277 | 294 | 18 | - | – | |
| Phobius | 277 | 294 | 18 | - | – | |
| Phobius | 295 | 311 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0330200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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