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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0332200 |
| Transcript ID | LotjaGi4g1v0332200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2c, putative; TAIR: AT3G17090.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q0V7V2|P2C42_ARATH Probable protein phosphatase 2C 42; TrEMBL-Plants: tr|I3SR35|I3SR35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0332200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71127415..71131986) extracted from Lotus japonicus Gifu genome v1.2.
CTCGTTTTAAATATGAGTGAGTCAAATTCATGATTACAAAAACGTAATTAAGCCTATAAATTTTTGGTACTAAAAAAAGA AATTATTGTATTTGCAAAAAGAAAAACAGGAACAAGATAAAATAAACGAAAATAGCTCATTGAAAATGAAAACAACACCA TCAAACAAACAGGGTCTTCCCCACACGGCCACACCATCCTCTCCCCAAACGGAATGAGCTCGTTCATGTTCCTCTACCAC CGAACACACCTCGCCACCACCTCTTGCTAACGTGCGCCTCCTTTCTTACCATACGCACCCTTTACCTTTTCGTTTTTTTT TTCTCCTTTTTGTCCTCTTTTTTTTTTCCCTTTTCATAACCTCCGCGTTAACCGTTCTCTCTCTCTCTTCCCCATTCAGA TTCGGAGGATCGGAGCAAATTCTGAAGGCTCGTGCGTTCGCGGTGGTTAGGGTTAGGGTTTCCGAGCGATGTGGTATGCT CCATGCATTGATGAATCTTCTCTCTGTGTGTTTGAAGCCATTTGGCCGCGCCGCCGATAGAGTCGAATCCGGTGGAATTC TCGGGAGCAGTTTTGCTGGAAGAGGAGAAGGTAAAGACGACTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGT GAATTCTCCATGGCCGTTGTTCAAGCCAACCAGGTTCTCGAGGACCAGAGCCAGATTGAGTCCGGTCCTCTCGGCACCTT CGTCGGTATTTACGATGGCCATGGCGGACCTGATGCTGCCAGATACGTTTGCGATCACTTGTTCCGCAATTTTCAAGGTT CATCAGCCTCTTTTCCCTCTCTGTTTCTATGTATATATATAGCACGGTTTCGTATTAATGTGATCACGTTACATTCATGA ATCACGAGTGGTGGAAGTAGTAATCAATTGACTTTTCATGAACCTTTTTTGAAAATACTGTTTGTTTTCATTGATTGTTT TAACTTTTATGTTCAAGATTTTTGTGGAGCCAAATACAGTTGAACATGCAGGCAAAGGGGTAGATTCTAGTCCAGGCAGT TTGTTATGTACATTTATTGTAAAATCAATTTTGATAGGTGAGTTGACTGTAAATTGTTAGGGAATGAATTGAGGTTTCCT TGACTTATGATGTGATAATTAAGTTCTTTGGAGCGTCGATTTTGTGTTGAAGGCCCATTGTTGTGGTGGGGCAGTCTACC TTCAATTTTGGTGCCTTCATGGGGTATAGTGTTTGGAGTTGGTTCTACATGGTCCTTGTCTCTTGATATAGGAGTGTCTT AGATATGTTTGTGCTAACTGTCTTAGATATGTTTGTGCAGCGATATCGGCTGAGTCACGTGGAGTGGTGACAGCTGAGAC AATTGAAAGGGCATTCCTACAGACAGAAGAGGGGTACACTGCTCTTGTATCTAACTCATGGAACTCTCGACCTCAGATTG CAAATGCTGGGTCCTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAATGCTGGAGATTCCCGTGTT GTATTGGGTAAGAAAGTTGGCAATACAGATGGTGTTGCTGCAATCCAACTGTCTACAGAACACAATGCAAATTTAGAGGC TATTAGAGAGGAGCTTAGAGAATTACACCCTAATGATCCCCAAATCGTTGTTCTCAAATATGGAGTGTGGAAAGTAAAAG GCATTATTCAGGTAATTTTACATACTTGTTTCCTCTTGAAAACCCTCATCTTCTTCAACATATGAAAAACAGTGCTTGCC TGAAGATGGTAAAACATTTGTTATATTATTCTATTCTAGATTGTTTGCCTTTCTCGGTGCTGCTGAATATACACAGATAT TATTGAACTTTGGTGATAGTGAAAGGAGTAGGAAGAAAACAATTTAAACATAAACTATATAACTTTTACAGTTGGTTTGT GATAGGCATAGACTTAGACCTCCTATTAAAAAAGTGCATGTCAGGTGCAATAATAGGAAGGAAGGAACTAATGTAACTAA ATAATGAAATATTTTGTCAGTATAGTTTACACTTTACAGTTTATAAGTAGAGGAGTTATAGCGTCTGTTAGTCAGTTTTT GGAATAGATGGAATTGGTTGGGTTGGTTTATTGGGAATCAGTGTTTGTACTTTTCTAGTCTTGAGCAAAATACAGATTTC TATCTTTCTCTGTTTCCAGAGTCACATTGATTCTGAGCTGAGGGTTTTATTCTTTTCTTATTACAGTTCCTCTCTACTGT AATTACCAGTTCTCACAGTTTGTAATATATTTATATTTTAAAAAATAGTACAGTGGTCTATAAAGGACGGTTCTTATGAT CTTCAGCTCAACTCTACCTGCATTTTATTTTATTATTGAACTCATACATAGTTTGTTAGTTAATGGTTCAAGTTATTCAC GTAGATTTTGCATTCATTATCTTATTTGTAAGTTTTACTTCCACTCCCCAAATTAATGACAATTTGACATTATCTTATCA CCACTTGATTGTTTTTGGTGCAGGTTTCTAGATCTATAGGCGACGTATATATGAAAGATGCGCGATTTAACCGGGAGCCA CTTGCTGCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGACTGCTAATCCCACTATTCTTTCTCATTCTCT CCAACCAAATGATTTGTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTAAGTAATGAAAAGGCTGTGGATATTG TCAACAGCAATCCACGTGCTGTAAGATTCTTTTCTCCCATGTCTGGATTTTCTTGCGGTATTTATTTCTGTAGTGGATCT TACCTGGTTTTTTTTCTTTTCTTTCTGGTATGCGTTTAGTCTTCAGATGACGATAAAATGCGTTGCCTTTTTGTGTCTTT TTGAATGCTCTGAGCCCAGTGGTTGCATCAAGAATTGGTTATGATGGTTAGTCCTATTTAATATATTAGTATGGTGAAGG ACTGAATATTTTTACATGGTTTAAATTTTGGTCTGGACAGAAGTTTGGAAAATTTCAGCTACAAATTTGATTTATAATTT TACTTTTAGTTCCCTCCATGCTTTATTATTCCTCATGTGAGCAAATCTTAAGTACTACTGTTGTACTGAAAACTCTGCTT TGATCTGGCTTACTGACAGTTTTTCTTTCTTAAAAAATAATTATTAGAATAGGAATAACTAACCATAGCATTGTTAGTAC ACACTACTGTAGCTAAGAATAAACTGTCCTATATCTGATTTTGACATGTTAAGATTAAATATTTTTATCTTGGCTGATTT GATAGGGTGTATAACTATAACTAATGAATGGAGCAGTATATGTAGTTTTGGGTAAGTAAGAAGTTATAACTAATAAGCTT GATCTCAACTGCTTGGCTTATCCTTTGTTAAGGAGTTTCAAGATTCCTACCATTGAATCTTAATTTGCTCTTATTCTTCT TGGTGAGATTCAAATTTTCCTTTGTCCAGCACTGTCACATTTAGTATGATAGGTTATTCATTAAAACAACTCCTATGTTA TCGTGATTGAATATTGCTAATTTTGCCTAAACAGGCATGTTACTAACTTCTTCCTCAGCGTTTAACTTAGTGTGCTCCAC TCCTTTCCTCCCTCATCTCTCTTTTCTCAATTCTGATGTGCTTTATTTATTCTCTCTTCAATTGTAGCTGTTCTGCTTGC TCGGGTTGCTATTTTCGCGGCTATCTTGCATCTCTAGGTCCTAAAATTCTGTTATTGCAGGGTAGTGCCAAGATACTTGT CAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGATATTCAGACCTACGTAAGATTGACAAGAAGGTTCGGC GCCATTTTCATGATGACATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATATCCAGAGGCACGGTGCTAAACCCA CCATTGTCATATCGAAGTGCTCTTGATCACGGTCTTGAATGATCATAAGCTGTCTTATACGAGTTTTTGCCAACTGTACA CCATTGTATCTGGCTTGAAGACGGTGGCGTGGCCCCTTTGGCTTTTGGTACTGTGGTCATTAATGAGGCACGAGAATTTA TTAAGTTATAACATTAGAAATTTTCCCATCAAGGGGAAAAAGAGCAAAATAACTTTTGATTATAGCGATTCCCTTTTCTA ACCTTGCAGTCCACATGCTGCTGCATTTGATTTTTGTTTTCTCTTTTCTTTTGGCAGATCATAGTTAATCAAGCAGCATG TTGATTGATTGATGTCAAATTTATTTAACTATCAAAGTTGCATATGTAATGAAGCATATTGAAGTTAAGTTCAGAAAAAA AAAAGCACCTCCATTTTGAAATTTAAGTACGATTCAATAAAAATAAAGAAATAAATTTAATGACAATTGTATTCCACGGG CTATAACTTCTAAGTGTTATCTGTTTTTTTTTTACGTAAAGATACTGCTTCTCATTCAACCACCCTTGGAGATAATGTCC AGGGCAATACTATGTTGTCCGTGCATGTTTATATTCAAGTTATATTATACTAACGGGAAAGTCTCTTTTCTCGATGCAAA TCTATCATTCAT
CDS sequence (LotjaGi4g1v0332200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCATGCATTGATGAATCTTCTCTCTGTGTGTTTGAAGCCATTTGGCCGCGCCGCCGATAGAGTCGAATCCGGTGG AATTCTCGGGAGCAGTTTTGCTGGAAGAGGAGAAGGTAAAGACGACTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCT CCGGTGAATTCTCCATGGCCGTTGTTCAAGCCAACCAGGTTCTCGAGGACCAGAGCCAGATTGAGTCCGGTCCTCTCGGC ACCTTCGTCGGTATTTACGATGGCCATGGCGGACCTGATGCTGCCAGATACGTTTGCGATCACTTGTTCCGCAATTTTCA AGCGATATCGGCTGAGTCACGTGGAGTGGTGACAGCTGAGACAATTGAAAGGGCATTCCTACAGACAGAAGAGGGGTACA CTGCTCTTGTATCTAACTCATGGAACTCTCGACCTCAGATTGCAAATGCTGGGTCCTGTTGTCTGGTTGGAGTGATATTT CAGCAGACACTCTTTGTGGCAAATGCTGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAATACAGATGGTGTTGC TGCAATCCAACTGTCTACAGAACACAATGCAAATTTAGAGGCTATTAGAGAGGAGCTTAGAGAATTACACCCTAATGATC CCCAAATCGTTGTTCTCAAATATGGAGTGTGGAAAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGCGACGTATAT ATGAAAGATGCGCGATTTAACCGGGAGCCACTTGCTGCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGAC TGCTAATCCCACTATTCTTTCTCATTCTCTCCAACCAAATGATTTGTTCCTTATATTTGCATCAGATGGTTTATGGGAGC ACCTAAGTAATGAAAAGGCTGTGGATATTGTCAACAGCAATCCACGTGCTGTAAGATTCTTTTCTCCCATGTCTGGATTT TCTTGCGGTATTTATTTCTGTAGTGGATCTTACCTGGTTTTTTTTCTTTTCTTTCTGGTATGCGTTTAG
Protein sequence (LotjaGi4g1v0332200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHALMNLLSVCLKPFGRAADRVESGGILGSSFAGRGEGKDDLLWFRDVGKYASGEFSMAVVQANQVLEDQSQIESGPLG TFVGIYDGHGGPDAARYVCDHLFRNFQAISAESRGVVTAETIERAFLQTEEGYTALVSNSWNSRPQIANAGSCCLVGVIF QQTLFVANAGDSRVVLGKKVGNTDGVAAIQLSTEHNANLEAIREELRELHPNDPQIVVLKYGVWKVKGIIQVSRSIGDVY MKDARFNREPLAAKFRLPEPMNMPIMTANPTILSHSLQPNDLFLIFASDGLWEHLSNEKAVDIVNSNPRAVRFFSPMSGF SCGIYFCSGSYLVFFLFFLVCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 19 | 6 | - | – | |
| Phobius | 20 | 322 | 303 | - | – | |
| PANTHER | 35 | 313 | 279 | 1.2E-129 | – | |
| PANTHER | 35 | 313 | 279 | 1.2E-129 | ||
| SMART | 43 | 322 | 280 | 5.8E-51 | ||
| Gene3D | 48 | 315 | 268 | 1.1E-63 | ||
| ProSiteProfiles | 53 | 342 | 290 | 35.59 | ||
| CDD | 57 | 309 | 253 | 1.14983E-51 | ||
| SUPERFAMILY | 65 | 306 | 242 | 6.54E-43 | ||
| Pfam | 79 | 307 | 229 | 2.3E-35 | ||
| ProSitePatterns | 82 | 90 | 9 | - | ||
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 323 | 341 | 19 | - | – | |
| Phobius | 342 | 342 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi4g1v0332200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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