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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0336200 |
Transcript ID | LotjaGi4g1v0336200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT2G47460.1 myb domain protein 12; Swiss-Prot: sp|Q9LZK4|MYB11_ARATH Transcription factor MYB11; TrEMBL-Plants: tr|K7MJQ1|K7MJQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0336200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71651807..71652913) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGA TTACATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTACATACTTACATGCATATCCAATTC CAATATTTCATAAGCATATAAGTGGAAATCGCGGACAGAAAATCCTTGCATTCACGCAGTTACACAATCTGAGTTGTTTG ATCAAGATTGTTCAGCTCACATTTTAAATTTATATTTATGGTCAGATCTGGATGAAATATATGAGCCTACCAATCTTCAC CGAATGACTCGGATTGCGTAACTGCGTGAATGCAGGGGATATACTAGAGTGTATATATGATTAATGATTTTCATTAGGTG TTTGTCTTATAATAGTATGTTTGAATGAGACTCAAATCAATTTCTGAAACCCGCTTCTCTTGAGAATTGATTTTGTATTT AGACATAGTTCATCTTTGAATCAACTTCTTTTTTCTTAAAATCAATTTTGACACCTAGAAACTATGCATATAAGTTTCTC TCGATAGTTGATTTTAACTTTAGAGTCGATTTTGTAGAAAAATTTCAAACATGCATTCAATTGCACAAAGATTTCGAAAG ATGGACTTAATTGGTTGGAACTATGAATGTATGTACATGTGAAGGTTTACTAAGATGCGGGAAGAGTTGCAGACTAAGAT GGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCT ATTCTTGGTAACAGGTGTGGCTCTTCCTTCCCAAAATAAACACCATTTGATTATATTTTGTATGTATAGTATATGTGGCT CTTCCTTATATATTTTTTATTTTATTTTTTGGTTATTGTTTCTGTTCAAAACATGGAATTGATTGATCTTCGCACATTCA ATTAATTGATACTCGGTTAAACATGGGGTTCCAGTGGTGGTTTGATTGAAAAAACTAGTAGACAGAAAGGTTTCCATATT TATATGGCTTCTCTTCTGATTTCCACTTTCAGCTATACATTGTATACTTATGCAGCAAAATTTATAA
CDS sequence (LotjaGi4g1v0336200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTAACTGA TTACATCCAACAAAATGGTGAGGGATCATGGAGATCCTTGCCCAAGAATGCAGGTTTACTAAGATGCGGGAAGAGTTGCA GACTAAGATGGATCAACTACTTGAGATCAGATGTGAAGAGAGGCAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAG TTGCATGCTATTCTTGGTAACAGGTGTGGCTCTTCCTTCCCAAAATAA
Protein sequence (LotjaGi4g1v0336200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCEKVGLKKGRWTAEEDKILTDYIQQNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVK LHAILGNRCGSSFPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 88 | 85 | 3.7E-62 | – | |
PANTHER | 4 | 88 | 85 | 3.7E-62 | ||
ProSiteProfiles | 9 | 65 | 57 | 20.626 | ||
Gene3D | 11 | 67 | 57 | 4.5E-18 | – | |
SMART | 13 | 63 | 51 | 3.3E-12 | ||
Pfam | 14 | 61 | 48 | 3.8E-14 | ||
SUPERFAMILY | 15 | 88 | 74 | 6.13E-22 | ||
CDD | 16 | 61 | 46 | 2.3254E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0336200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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