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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0336300 |
| Transcript ID | LotjaGi4g1v0336300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin subunit alpha; TAIR: AT4G16143.1 importin alpha isoform 2; Swiss-Prot: sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b; TrEMBL-Plants: tr|A0A151SSZ8|A0A151SSZ8_CAJCA Importin subunit alpha; Found in the gene: LotjaGi4g1v0336300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71660337..71664938) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGCTCCGCCCAAATGCCAGAACCGACATCCGCCGCAACCGCTACAAGATCGCCGTCGACGCCGAAGAGGGCCGCCG TAGGAGAGAGGACAACCTCGTCGAGATACGCAAAACCAAGCGCGAGGAGAGCTTGCAGAAGAAGCGCCGTGAGGGCCTTC AAGATCACCAACAGCTCTCCACTCCTCTTCTCGACAGCAAGGTAAATCAACGCATCTTCACTTTTTCTTGCTGCAAAGAA CAAATTAGGGCTCGATCGATTGTGTATTTTCATGTTTCTGCAAATTGATTTGATTTGTTAGGGTTCTTGTATGTTAGGTA CTGTGAATCTGTGATGTTTAGTTGTATGAATCTTTTTGACGGTTGTTTGTTCATGTCTGTTGATGCAGCTAGAGAGTATT CCTTCCATGGTTAATGGTGTCTGCTCGGTTGATAATAATCTGCAGCTGGAAGCCACCGCGCAGTTCCGCAAGCTTCTTTC AATGGGTAACGTTGAACGATTCGCTTTTAATCGCTATTCTCTGAACCTGTTGTGTGGCTTAGCGGTTTTTATTGATTTTT GGCTGCAGAACGGAACCCTCCGATTGAGGAAGTTATTCAATCTGGTGTTGTACCGCGCTTTGTTGAGTTTCTTGTTAGGG AGGATTTCCCTCAACTTCAGGTTTGTTTTTCCTTGTGGATGCTTAAACCGTTAGTTGAAATTTGTTTTTCTCATTAGTTA TTCATGTTACCTGTTATTTTCTTTTTAGTTTGAGGCTGCGTGGGCTCTCACTAATATAGCATCGGGAACTTCTGAGCATA CTAAGGTGGTGATTGATCATGGAGCTGTTCCTATCTTTGTGAAGCTACTTAATTCACCTAATGGTGATGTTCGGGAGCAG GTACTTTATATTTGAATGGGTCAATTTGAGCATTTTCATTTTTTAATCTGCTGAACATTAATTCTATGAAATTCTTCCAG GCAGTGTGGGCTTTGGGGAATATTGCTGGTGACTCCCCAATGTGTCGTGATCTAGTGCTTAGCCACGGTGCCCTCGTCGC ACTGTTGTCCCAGTTTAATGAGCATGCGAAACTTTCAATGCTGAGAAATGCCACATGGACATTGTCAAACTTTTGTAGGG GAAAACCTCAGCCTGCATTTGAGCTGGTAGCATCTATACATTTCTCTTGTCATTGGTTAATATAAATCAGAGTATCAAAC TTTTAAGATAGGTTCTCTCGGCACATTTTTATTGCGAATAATTTTCATGGCAGGTGAGTCCCGCACTTCCAGCCCTTGCG CGTTTAATTTTTTCTAATGACGATGAAGTTTTGACGGATGCCTGCTGGGCATTATCATATCTCTCTGATGGCGCAAATGA TAAAATCCAAGCTGTAATTGAGTCAGGTGCATGTGAGCGACTGGTGCAGCTTCTTCTGTGAGTATTAATTCTACTGTACA ATATTAAAAAATAATCTATTGTTTCAATTGTTGACTGCCCTGACTTTGTATAATGGCTTTTCAGGCATCCAACTCCTTCA GTGGTGATTCCGGCCCTTCGTACTGCTGGAAATATTGTGACTGGAGATGATATGCAGACTCAGGTAATGACTTGTAAGCA GTGTAATCAAATATCGGCCTTGGTGGAATCTCATGGAAGGTTTTTGGCTCTCCGCCATGACCGATATCCTGCCATGATCC ACCATCATTATTTGTCAAATATGGCGGTTTTTTCGCCTCTCCGCCATAGTCCACCATCCGCCATCATTAACAGCTGCTTG TATAGGCGCTGTAATAAGCAATTTTTTGTATGATTAAAAGGAGCGGTGATGCATTTTCATTTATTTGTCCAGATTGTTCC AAATATTTTCTTATTCAACTCTAGTTCTGTTGAAAGTTAAAATCAATAATCATTGCATTGGCAGAATGAACTGAGTTATC TGTCTCTTTGTGCTCACTGTCCTTTTTCATCCTGTTTTGTGCATTTGTATCACTACGTTTAGAGTCTCCTAATTCTGTCA AAATTTTCCCCTCAGTGTATTATCAATCATGGTGCACTCCCTTCCCTTTTGAGCCTGTTGACACATAATCATAAAAAAAG CATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGTAAGCCATCAGATCC CAATTTTTTGGCCATTGTTTTTTTATGTTGTCAATGCTTCTATTTTTCTATTCGCTATGTTGAATCTACGTACATATTTA ATTGAACTACTCAATGGAGAATTTAAGCTTAAAGTTGCAGGAGTTTGTCTTGTCTTTCCAGGCTTGGATCATACCTCATT GTTTTTGTTGGTCCTATCCCCAGTATTGTAATGGACATTCTAACCAACCTAGATTTAGTTATTCCTTGGGAATGCCAACA GAAAAGAATAATGATCGATTTAGTCTCAACCCCACCTTTTCTATCTTTCTTTCCCCTCTAATTACAAAATGGGAAATCTA TTAAATATAATGCGGTGTGCCATTGACCTTTTGTATTCTGCTGTCTCATAAGAATAAGAGTTTGTCTGTTTGTATGAGAT CACAACTAGCTCATGAAATTTGGCTGATCTGTGTACTACCACTGGCCTTTTGTATTGCAGCCTCTCGTAAGAAAAGAGTT TGTCTGTTTGAATATGAAGCAGTGTTATCAAATAGCGGCTATAGCGGCCGCGACCCGCTATAGCGTAGCGGATTTTAGGG CCACCGCAATCGCTACGCCGCGACATAGCGGCCACCGCGAGAAATGCAATTGCGGCCGCGACGGCCGTAGCGGCGCTGTA AGCTAAACGGAAATAGCGGATTTTGAGGAATACTGCACGTTTTTTTTAGTTTTAGGGTTTTTAAATATGGTAATTCTTGA CTAGTGGGCCACCAAGTGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTTCCTTTTTCTGTTTCACTGCTTTAC TGCCCAATTAACTCCCCATTAATTATTTTTTTCTATATTTACGCTTCATCATGAAGAATCACGGCAGAATTGAAAAGGTT TCCAAAATCCTAATTCTCCTTCTCTCATCCTCCTTCTACAAGCCCAATTAACTCCCCATTAATTCGTTTTTGTTGCATTT CCTTTTTCTGTTTCACTGTTTTAAGACTTGTGTTTGGTTTATGTTGTTTTAAGTCCTTTGACATTTGTTTTGAGCTGGTG GCAGCCTTTAATAATTAAAATTTGGTTGTTAAAAATGATGATTTTATGCAGTTTTTATTGTTATGTGATAAGCTGTTGTT TTTTATGCAGTTTTTATTTGTTCATTTCAAATGTTTCTGCTCTAGTATTGCAATAGATGTCTGATAAGCTGCTGTTTTTT TATAATATTTTACTTATTTTAACCGCTATGTGGTTACCGCTATTTGCCCGCGACGCTATCCGCTAAACACAATAGCGGAT TTTGGCCTCGCCGCGATTTTTTGCGATCGCGATTTGACAACACTGATATGAAGTCACAGCTAGCTTATGAAATTTGACTT ATCAGCTGGATTAGATGGAATGTGTTTTCTGTTTCATCACAAGTTGATTGTTGTTCAGAGATAAATTTGTCTAATAGAAG TTGAGAGAATTGGAGAGGAAAATGAATTGTGTATTGAATTGTGATAGAGAGACAGATTATATATTTTGTTTCCAATAGAG ACAGTGATGGAACTGCCTTACTAACTTCTAATCTATCTAACTGAACAGTAACAGAAACTGACTGGTAACAGAGGACTAAT AACTGCCTAAGCTAGAATCACATACAATTAACAGTAGTATAACTACAGTGTGCTCTTCGAGTACCTACGCTGTAATAGTC ACAAGTTACAACTAGACCACTGAAGGCGGAGGTATTAATCTGGCTGGAAGCATGGCTTTGGATTTTATATTTTCTAATTT CTAATTCAAGAGCTCAAATGGGTTGTGGTCTATATGTTATTATAAACCTTAACATTCAGTTTTTTGTGTTGCTGGTTAGC TTATGCGTTTTATTTATATAGGCTGTTATTGAAGCTGGTCTCATTGCTCCACTTGTCAATCTTCTCCAAAATGCTGAGTT TGAAGTTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACGTCTGGTGGAACAAATGAGCAGATTAAGTAAGTATTTC ATTAAACTGGTTCTTTATCATGCAAACTTTGTGAGATTACAATATTCACTTATCTTATGGGTTTACAAGGTACATGGCGG ATCAGGGTTGCATAAAACCTCTTTGTGATCTGCTTGTCTGTCCTGATCCAAGAATAGTGACTGTCTGTTTGGAGGGCTTA GAGAACATTCTGAAAGTTGGAGAAGCTGAGAGGAACTTGGGTAACTCTGAAGATGTCAACTTGTATGCTCAGATGATTGA GGATGCTGACGGATTGGAGAAGATAGATAACCTGCAAAATCATGACAACAACGAAATATATGAGAAGGTTGTTAAAATTC TTGAAACATACTGGTCAGAAGATGTAGATGAGACACTACCTTCAAGTGATGGTGCCCCACCGGAATTCAATTTTGGAAGT AACAATCCTTCAGTACCATCTGGAGGATTCAACTTCATCTGA
CDS sequence (LotjaGi4g1v0336300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGAACCGACATCCGCCGCAACCGCTACAAGATCGCCGTCGACGCCGAAGAGGGCCGCCGTAGGAGAGAGGACAAC CTCGTCGAGATACGCAAAACCAAGCGCGAGGAGAGCTTGCAGAAGAAGCGCCGTGAGGGCCTTCAAGATCACCAACAGCT CTCCACTCCTCTTCTCGACAGCAAGGTACTGTGAATCTCTAGAGAGTATTCCTTCCATGGTTAATGGTGTCTGCTCGGTT GATAATAATCTGCAGCTGGAAGCCACCGCGCAGTTCCGCAAGCTTCTTTCAATGGAACGGAACCCTCCGATTGAGGAAGT TATTCAATCTGGTGTTGTACCGCGCTTTGTTGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGT GGGCTCTCACTAATATAGCATCGGGAACTTCTGAGCATACTAAGGTGGTGATTGATCATGGAGCTGTTCCTATCTTTGTG AAGCTACTTAATTCACCTAATGGTGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGGAATATTGCTGGTGACTCCCCAAT GTGTCGTGATCTAGTGCTTAGCCACGGTGCCCTCGTCGCACTGTTGTCCCAGTTTAATGAGCATGCGAAACTTTCAATGC TGAGAAATGCCACATGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCTGCATTTGAGCTGGTGAGTCCCGCACTT CCAGCCCTTGCGCGTTTAATTTTTTCTAATGACGATGAAGTTTTGACGGATGCCTGCTGGGCATTATCATATCTCTCTGA TGGCGCAAATGATAAAATCCAAGCTGTAATTGAGTCAGGTGCATGTGAGCGACTGGTGCAGCTTCTTCTGCATCCAACTC CTTCAGTGGTGATTCCGGCCCTTCGTACTGCTGGAAATATTGTGACTGGAGATGATATGCAGACTCAGTGTATTATCAAT CATGGTGCACTCCCTTCCCTTTTGAGCCTGTTGACACATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTAT ATCAAACATTACTGCTGGAAATAAGGAACAAATACAGGCTGTTATTGAAGCTGGTCTCATTGCTCCACTTGTCAATCTTC TCCAAAATGCTGAGTTTGAAGTTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACGTCTGGTGGAACAAATGAGCAG ATTAAGTACATGGCGGATCAGGGTTGCATAAAACCTCTTTGTGATCTGCTTGTCTGTCCTGATCCAAGAATAGTGACTGT CTGTTTGGAGGGCTTAGAGAACATTCTGAAAGTTGGAGAAGCTGAGAGGAACTTGGGTAACTCTGAAGATGTCAACTTGT ATGCTCAGATGATTGAGGATGCTGACGGATTGGAGAAGATAGATAACCTGCAAAATCATGACAACAACGAAATATATGAG AAGGTTGTTAAAATTCTTGAAACATACTGGTCAGAAGATGTAGATGAGACACTACCTTCAAGTGATGGTGCCCCACCGGA ATTCAATTTTGGAAGTAACAATCCTTCAGTACCATCTGGAGGATTCAACTTCATCTGA
Protein sequence (LotjaGi4g1v0336300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPEPTSAATATRSPSTPKRAAVGERTTSSRYAKPSARRACRRSAVRAFKITNSSPLLFSTARYCESLESIPSMVNGVCSV DNNLQLEATAQFRKLLSMERNPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV KLLNSPNGDVREQAVWALGNIAGDSPMCRDLVLSHGALVALLSQFNEHAKLSMLRNATWTLSNFCRGKPQPAFELVSPAL PALARLIFSNDDEVLTDACWALSYLSDGANDKIQAVIESGACERLVQLLLHPTPSVVIPALRTAGNIVTGDDMQTQCIIN HGALPSLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQNAEFEVKKEAAWAISNATSGGTNEQ IKYMADQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAERNLGNSEDVNLYAQMIEDADGLEKIDNLQNHDNNEIYE KVVKILETYWSEDVDETLPSSDGAPPEFNFGSNNPSVPSGGFNFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PIRSF | 32 | 524 | 493 | 1.8E-200 | ||
| PANTHER | 41 | 524 | 484 | 3.0E-259 | – | |
| PANTHER | 41 | 524 | 484 | 3.0E-259 | – | |
| SUPERFAMILY | 66 | 493 | 428 | 8.06E-120 | ||
| Gene3D | 68 | 491 | 424 | 4.5E-212 | ||
| SMART | 100 | 141 | 42 | 3.7E-9 | ||
| Pfam | 101 | 141 | 41 | 3.2E-10 | ||
| ProSiteProfiles | 111 | 154 | 44 | 10.202 | ||
| SMART | 143 | 183 | 41 | 6.7E-10 | ||
| Pfam | 144 | 182 | 39 | 1.3E-12 | ||
| ProSiteProfiles | 154 | 196 | 43 | 12.162 | ||
| SMART | 185 | 226 | 42 | 3.3 | ||
| Pfam | 185 | 226 | 42 | 1.3E-6 | ||
| SMART | 228 | 267 | 40 | 5.7E-4 | ||
| Pfam | 237 | 267 | 31 | 8.7E-8 | ||
| ProSiteProfiles | 238 | 280 | 43 | 9.537 | ||
| SMART | 269 | 309 | 41 | 0.0015 | ||
| Pfam | 270 | 308 | 39 | 1.3E-6 | ||
| SMART | 311 | 352 | 42 | 2.0E-8 | ||
| Pfam | 312 | 352 | 41 | 1.4E-10 | ||
| ProSiteProfiles | 322 | 365 | 44 | 11.462 | ||
| SMART | 354 | 394 | 41 | 6.3E-10 | ||
| Pfam | 354 | 393 | 40 | 1.2E-12 | ||
| ProSiteProfiles | 365 | 400 | 36 | 9.187 | ||
| SMART | 397 | 437 | 41 | 5.3E-7 | ||
| Pfam | 397 | 435 | 39 | 1.8E-7 | ||
| Pfam | 452 | 500 | 49 | 8.9E-21 | ||
| MobiDBLite | 495 | 525 | 31 | - | – | |
| MobiDBLite | 506 | 525 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Nuclear import signal receptor activity | Combining with a nuclear import signal (NIS) on a cargo to be transported, to mediate transport of the cargo through the nuclear pore, from the cytoplasm to the nuclear lumen. The cargo can be either a RNA or a protein. |
Expression pattern of LotjaGi4g1v0336300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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