Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0338500 |
| Transcript ID | LotjaGi4g1v0338500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT3G16720.1 TOXICOS EN LEVADURA 2; Swiss-Prot: sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2; TrEMBL-Plants: tr|A0A067JV40|A0A067JV40_JATCU Uncharacterized protein; Found in the gene: LotjaGi4g1v0338500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71879208..71881463) extracted from Lotus japonicus Gifu genome v1.2.
CTTCATTGTGTTGACAGAAACTATGGAAATTGAAAGAAAGAAAGAAACTATGGGACAAACAAACCAATGGAAAGGACAAC ACAATTTCCACAAACAGTGTAGAGCAAAAGGGCACACAGGTCATTGCATCAAAACCGCGTGAAGAAGAAGATCATCCGTT GCCAGAATACAGAGACCAGAGTAAGTAAAGAAATGAATGAAATCGAATTGAATTGGATTGGATAATAATAACAACAGCAG CGGCAGCAGCCGCTGCAATAAATAAATAAATACATATCACAACGCTATCATTCTCATCGCTTCCAACAACGGTTTTTCTT TCTCTTTATCTCTTATCTCTCTCTGTCTCTACCTCAGAACAGAGCTCAAATCGATTACATATGGACAACGGTTACAGCGA CGAAACCGAACGCCGCCACTACGCTTTCAGCGGCAAGATAATGTTAATCTCCGTTATCGTTCTCTTCGTCGTTATCATCA TAGTGGTTTGTCTCCACCTTCAGCTTCGCTGGTACCTTCTACATGCACGCCGCCGCCGCCGCCAAAACATCACCCGCCGC CGCCGTTCTCAGTTCTTCTTCTACGTCGACCCATCTGTCTCCACAGCCGCCACCCGCGGACTCGATGCCTCCGTCATTTC GTCTCTTCCCATTTTCACCTTCTCCCCCAAGACCCACCCGGACCCGGTTGAATGCGCGGTTTGCTTGTCGGAGCTCGAGG ACGGTGAAACGGGTCGGGTTTTGCCCAAATGCAATCACACCTTCCATGTTGATTGCATCGACATGTGGTTTCACTCCCAC TCCACCTGCCCGCTCTGTAGGGTGCCCGTCGAACCCGCGCCCGAAATGGTGACCCGATCCGATGTGACTGACCCGGAACT GGGTTCGAGCTCTGGGTTGTGCTCTGAGTGTGAACAGGGTGTGAGTGTGAGTGTTGAGGTGCCAGGAAGAGACGATATCA GATGCGATTCGTCGTCGTTTCGGTCACCGATGAGTCGCGTGCTGTCATTGACGAGAATTCTGAGCAGAGAGAAGAAAGTG AGTGTTTCTCCGGCGTCGGGTTGTGAAGCAGGGTGCAGCTCCATGACCATGACCGAGTTAGACGCAGAACGAGGGCATGA ATCGGTGGTGACTCGGAGTGCAGGGGTGTGATGACGTGCGCGCATTGGAATTAGACGACTGAGTCATTATCCAAAACGAG GAAGAAGGGATTGATACGGTGGCGGCGATTGGGTTGCGCTGACAAGATAATGGCGGCGGTCAATGGTCAACCCTCTATGT CTGTTTTGTGCTTTTACAACAGATTTTGGAAAGAAAAATTCAATTAATTTATTTAATGGATTTATATTCTAACAATGTTA TCTTCCACCATGACTTCAATAACTAATTTCAGTTTTCTTACTTTGACCCGACTTATTTTTTACTTTAAATTACTTTTAAG AAAAATTGGGCTAAACACACTTGATAATAAGCTCTTAAAAAATAAGTTACTTATTCTTTTAAAAAAATATATGAAAAAGT GACTTTTAAATAAAAAGTTAAATGAGAGAGCTTTTTTCAAATAAGTTGTAGAGAGATCACCTCCACCCTCTACCACAACC ACCACTTCTACCATCACCTCCACCACAACCGTCCACCAACACCACGACCACCACCTCCATCGCCGCCACCACCACCGCCG CCATTGCCACCACCACCATCACATCCACTACTACCGCCACCCTCCACCACCACCACCTCTACCATCACCTCCACCATAAC TGTCCACCACCACCATCGTTGTCACCTCCACGACAACCCTCACCACCACCGCCACCACCTCCATTGCCACCACCGCCACC ATCTTCATTGCCACTACCACAATCACCCCACTGTTACCACCACCCTCCATCCTCCACCACCTTCACTATCAACTCCACTA CAACAGTTCACCACCACCATCGTTGCCTCCACCCTCCACCGTCATCACCACCACCACCATCTCTACCATCACAACCGTTC ACCACCACCATTACCACCGCCACCACCTCCATTGCAACCAACACCACCACTTTCATTGCTCCCACGAACATCACCTCCAT TGTTACCACCACCCTCCACCTCTACCATCACCTCCACCACAAACGTTCACCGCCACCATCGTTACTACCGCCATAAACAT GCCCCGTCACCGCCATTGCCGCCTCCGAACCACCCTCATCCCTCAGAATAATTGTCACTTAACCAAAGGATTTGTAATTT TTTTCTTTGTTCTAAT
CDS sequence (LotjaGi4g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACGGTTACAGCGACGAAACCGAACGCCGCCACTACGCTTTCAGCGGCAAGATAATGTTAATCTCCGTTATCGT TCTCTTCGTCGTTATCATCATAGTGGTTTGTCTCCACCTTCAGCTTCGCTGGTACCTTCTACATGCACGCCGCCGCCGCC GCCAAAACATCACCCGCCGCCGCCGTTCTCAGTTCTTCTTCTACGTCGACCCATCTGTCTCCACAGCCGCCACCCGCGGA CTCGATGCCTCCGTCATTTCGTCTCTTCCCATTTTCACCTTCTCCCCCAAGACCCACCCGGACCCGGTTGAATGCGCGGT TTGCTTGTCGGAGCTCGAGGACGGTGAAACGGGTCGGGTTTTGCCCAAATGCAATCACACCTTCCATGTTGATTGCATCG ACATGTGGTTTCACTCCCACTCCACCTGCCCGCTCTGTAGGGTGCCCGTCGAACCCGCGCCCGAAATGGTGACCCGATCC GATGTGACTGACCCGGAACTGGGTTCGAGCTCTGGGTTGTGCTCTGAGTGTGAACAGGGTGTGAGTGTGAGTGTTGAGGT GCCAGGAAGAGACGATATCAGATGCGATTCGTCGTCGTTTCGGTCACCGATGAGTCGCGTGCTGTCATTGACGAGAATTC TGAGCAGAGAGAAGAAAGTGAGTGTTTCTCCGGCGTCGGGTTGTGAAGCAGGGTGCAGCTCCATGACCATGACCGAGTTA GACGCAGAACGAGGGCATGAATCGGTGGTGACTCGGAGTGCAGGGGTGTGA
Protein sequence (LotjaGi4g1v0338500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNGYSDETERRHYAFSGKIMLISVIVLFVVIIIVVCLHLQLRWYLLHARRRRRQNITRRRRSQFFFYVDPSVSTAATRG LDASVISSLPIFTFSPKTHPDPVECAVCLSELEDGETGRVLPKCNHTFHVDCIDMWFHSHSTCPLCRVPVEPAPEMVTRS DVTDPELGSSSGLCSECEQGVSVSVEVPGRDDIRCDSSSFRSPMSRVLSLTRILSREKKVSVSPASGCEAGCSSMTMTEL DAERGHESVVTRSAGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 189 | 189 | 1.1E-58 | – | |
| PANTHER | 1 | 189 | 189 | 1.1E-58 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 20 | 46 | 27 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 47 | 256 | 210 | - | – | |
| Gene3D | 81 | 154 | 74 | 4.0E-21 | ||
| SUPERFAMILY | 85 | 153 | 69 | 1.48E-23 | – | |
| CDD | 104 | 147 | 44 | 1.46863E-17 | – | |
| Pfam | 104 | 147 | 44 | 4.8E-13 | ||
| SMART | 105 | 146 | 42 | 5.8E-7 | ||
| ProSiteProfiles | 105 | 147 | 43 | 12.843 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0338500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…