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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0339900 |
| Transcript ID | LotjaGi4g1v0339900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translationally-controlled tumor protein, putative; TAIR: AT3G16640.1 translationally controlled tumor protein; Swiss-Prot: sp|Q5J907|TCTP_ELAGV Translationally-controlled tumor protein homolog; TrEMBL-Plants: tr|I3SG51|I3SG51_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0339900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71970843..71971765) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTGAATTTGTGGACTTAACTGATGTAGGTGATGAGCTTCTCTCGGACTCCTTCCCATACAGGGAAATTGAGAATGG ATGTTTGTGGGAAGTTGATGGAAAGGTCAGTTGAATCTCGTGCACAGATCTGGATTTTGTTGTTATTTGTTAATATTTAA ATATCATTTTATTTCTTTTATATTTAATATAATTGCATTCTTTTGAAGTAGATTTACTGCATATGTTGTTGGTTGTTATA ACATGCCTAACAAGTTGACGGCTTTGTTTTTGGTTTGCAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATTGGTGCAA ACCCTTCTGCTGAAGGTGGAGGAGAAGATGAGGGAGTTGATGACCAAGCTGTGAAGGTTGTTGACATTGTCGACACCTTT AGACTCCAGGTTTGGACAATGATATTCATCTACTTATTATTGAATTTTAGTATTGTCTTGGTGTTTATTGTATTGAGTGT TTTTGTCATGTTATTATTGCAGGAGCAACCTCCTTTTGACAAGAAGATGTTTGTTACCTTCATTAAGAGGTATATCAAGA ATTTGACACCTAAACTTGATGAAGAGAACCAAGTGCTATTTAAAAAGCACATTGAGGGAGCAACTAAGTACCTTCTCTCC AAGCTCAGTGATCTTCAGTTGTGAGTGTCACCTCTCCGTGTTTGTCTCTGATTGATTCATTTGGGTTATCATGATGGGCA ATTTTGTCAAGTTTGTTTTCTTAAGCTCTTACTTCTGTGTAATAGTTAAAATGATTCAACACTGAGCTGAAGTTTTCTTG TACAGTTTCGTTGGGGAGAGCATGCATGATGATGGCAGCTTGGTCTTTGCCTACTACAAGGATGGTGCTGCCGATCCTAC ATTTCTGTACTTTGCACAAGGTTTGAAGGAGGTGAAGTGCTGA
CDS sequence (LotjaGi4g1v0339900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAATTTGTGGACTTAACTGATGTAGGTGATGAGCTTCTCTCGGACTCCTTCCCATACAGGGAAATTGAGAATGG ATGTTTGTGGGAAGTTGATGGAAAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATTGGTGCAAACCCTTCTGCTGAAG GTGGAGGAGAAGATGAGGGAGTTGATGACCAAGCTGTGAAGGTTGTTGACATTGTCGACACCTTTAGACTCCAGGAGCAA CCTCCTTTTGACAAGAAGATGTTTGTTACCTTCATTAAGAGGTATATCAAGAATTTGACACCTAAACTTGATGAAGAGAA CCAAGTGCTATTTAAAAAGCACATTGAGGGAGCAACTAAGTACCTTCTCTCCAAGCTCAGTGATCTTCAGTTTTTCGTTG GGGAGAGCATGCATGATGATGGCAGCTTGGTCTTTGCCTACTACAAGGATGGTGCTGCCGATCCTACATTTCTGTACTTT GCACAAGGTTTGAAGGAGGTGAAGTGCTGA
Protein sequence (LotjaGi4g1v0339900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEFVDLTDVGDELLSDSFPYREIENGCLWEVDGKWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQ PPFDKKMFVTFIKRYIKNLTPKLDEENQVLFKKHIEGATKYLLSKLSDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYF AQGLKEVKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 169 | 169 | 55.182 | ||
| Gene3D | 1 | 169 | 169 | 2.2E-50 | ||
| PRINTS | 2 | 22 | 21 | 1.1E-17 | ||
| Pfam | 2 | 165 | 164 | 4.7E-51 | ||
| PANTHER | 4 | 169 | 166 | 4.4E-98 | ||
| PANTHER | 4 | 169 | 166 | 4.4E-98 | – | |
| SUPERFAMILY | 11 | 169 | 159 | 3.1E-53 | ||
| ProSitePatterns | 46 | 56 | 11 | - | ||
| PRINTS | 47 | 58 | 12 | 1.1E-17 | ||
| PRINTS | 61 | 80 | 20 | 1.1E-17 | ||
| ProSitePatterns | 126 | 148 | 23 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0339900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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