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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0340200 |
| Transcript ID | LotjaGi4g1v0340200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G20770.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770; TrEMBL-Plants: tr|V7CI80|V7CI80_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0340200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71993717..71999588) extracted from Lotus japonicus Gifu genome v1.2.
TTATATGTAAAATTTGTTCACACGTGTGTGTGCTTTTTTTATTTATTAAACTCATAATTTCCAAGGAGATCGATGAAAGT GCAAATGGTTTTGGAAGTAAAAAAGCATGTCCTCGCAGTCGCAGGGAGGGAAGTTGGCAAGTCTAGTGCAGTCGTGCATC ACCAAGAAAGCCGTGTTACCCGGTAAAGCCGTCCACGCTCGCATCTTCCGCCTCGGCCTCTCCGGCGACACCTTTCTCTC CAACCACCTCATCGAACTCTATTCCAAGTGCGACCGCATCACCACTGCACACCAAGTGTTCGATCAAATTCCTCACAGGA ACATCTTCTCATGGAACGCCATTTTGTCTGCTCATTGCAAAGCCCACGACCTGCCAAACGCGTGCCGTTTGTTCCTCCAA ATGCCCGAGAGGAACACCGTCTCGTTGAACACCTTAATCACTGCCATGGTACGCGGTGGTTACCAACGCCAGGCGCTCGA TACCTATGATTCTTTCATGCTGCATGATGATGGGGTTGGAGCTAGAGTTAGACCCTCCCACATTACATTCGCTACCGTTT TCGGTGCTTGTGGTGCTTTGTTAGATGAAAATTGTGGTAGGAGGAATCACGGGGTTGTGATCAAGGTTGGTCTTGACAGT AATATATACGTGGGAAATTCTCTTTTATCCATGTATGTTAAGTGCGGGCTTCACGGGGATGCTGTTCGTGTTTTTTGGGA CATTCCTGAGCCGAATGAGGTTACTTTTACTACAATGATGGGTGGTTTAGCGCAGACGAATCAAGTTAAGGAAGCTTTAG AATTGTTTAGGAACATGTTGAGAAAAGGGATTCCTGTTGATTCTGTTTCGTTGTCCAGCATTTTGGGTGTTTGTGCCAAA GGAGGATCTGGGGAAAGGGAAAAATTTCTCTCTGATTATAGTCATGTACAAGGGGAACAAATACATGCACTCTCGGTTAA ACTGGGATTTGAGAGTGACCTCCATTTAAGCAATTCGCTGCTCGACATGTATGCGAAAGTTGGGGACATGGATAGCGCTG AAAAAGTTTTTGTTAATCTGAATCAGCACAGTGTTGTTTCTTGGAATATAATGATTGCTGGGTTTGGGAACAAATGCAAC AGTGAGAGAGCTGTTGAGTATTTTCAAAGGATGCAGTGTTGTGGATATGAGCCGGATGATGTTACTTATATTAATATGCT GACAGTGTGTGTGAAGTCTGAGGATGTTAAAACTGGGCGTCAAATATTTGATCGCATGCCGTGCCCGAGTCTGACTTCAT GGAATGCCATACTCTCAGCCTATAACCAGAATGCAGATCACCAAGAGGCTGTTACACTGTTTAGAAACATGCAGTTTCAA TGCCAACATCCTGATCGGACTACATTGGCCATTATCCTGAGTTCATGTGCTGAGTTGGGACTTCTCAAGGCTGGAAAACA GGTTCATGCAGTTTCTCAGAAGTTTGGATTTCATGACGATGTGTATGTTGCTAGCAGCCTTATTAATGTGTATTCAAAAT GTGGGAAAATGGAGTTGTCTAAGAACGTGTTTGGTAAACTTCCTGAACTGGATGTTGTCTGTTGGAACTCAATGATAGCA GGGTTCTCAATCAATTCTCTTGAACAAGATGCTTTGTTTTTCTTTAAGCAGATGCGGCAGTTTGGCTTCTTGCCTTCTGA GTTTTCTTTTGCTACCATAATGAGTTCTTGTGCAAAACTTTCTTCCTTATTTCAAGGACAACAGATTCATGCTCAGATCA TAAAAGATGGTTATATAGATGATATGTTTGTGGGGAGTTCTCTTATAGAAATGTACTGTAAATGTGGGGATGTAGGTGGA GCTAGATGCTTTTTTGATATGATGCCTGGTAAAAATATTGTGACATGGAATGAAATGATACATGGTTATGCACAGAATGG ATATGGTCATGAGGCTGTTTGCCTTTATAAGGACATGATTTCGTCTGGTGAAAAACTGGATGATATTACTTTCATTGCTG TTTTAACTGCTTGTACCCACTCGGCATTGGTTGATGAAGGAGTTGAAATATTCAATGCAATGCTGCAAAAATTTGGTATG GTGCCAAAGGTGGATCATTATACTTGCATCATAGATTGCCTGAGCCGAGCAGGGAGGTTTCAAGAAGTAGAAGTTATTCT AGACACAATGCCAAGTAAAGATGATGCAATTGTGTGGGAGGTTGTGCTCAGCTCATGCCGTATTCATGCTAACTTGAACT TAGCAAAAAGAGCAGCTCAAGAACTCTATCGACTAAACCCACGCAATTCTGCCCCTTATGTGCTTCTTGCCAACATGTAT TCTTCACTGGGAAGGTGGGATGATGCACGGGCTATTAGAGATCTGATGAGTCATAACCAGATCCATAAGGATCCTGGTTA TAGTCGGAGTGAGTTCATGAATGACGCTCAAATCACTCTGTAAAACAATCAAAAATCATTTATTGGTTGGATATGAACTC AAGAAATACGATCCCATTTTGAGGTTCTCTGAAATCAAACCAGCTAATTTTACAATGAGAGCTCTAATTGTGGAGTGAAA CTACCTCCAAGTTAATAATGGTTACTTTCCTAGGTCTTAATTTCTTACATTCTCCTCCGTGAAGATGGTTAATAATTTTT TATGATAGCCCTTTGATAACCATCAGTGGAAACACAACATATTGATTGCTTATTGAACTGGAGTTTCATGTCATCTAGGT GACATATTTGATATTTCAGATACAAGGCAGTATAAAGTTTGAAACCCCTCGAAAATTTTCATGGAACACTCTGATTTTTG TATGCTGTAGAAATTACTACCGTGCCAATTTAGGAAGGCAGAGTCCTGAAATTACATGTTTTACTACATAGGGAGTCTTT TCTTGCAGGATATATTGACTATTGTTCTATTGGTGTTTGGCACCTTTCATGTTTCTTAAAAAATCCATCATGTCTACCTG CTATTGCAACTGATGGTTGTACTACTGCATTCTTTCATTGGTTTAGACTTCAAACAGATAAAGAAGTTCTCTGGTATTTT TCATGTGTGTCTGTGTCAGATCTACTATTGTACAACTACTTATCCAGATTTACCACGGCACAACTACTCGTTAGGGTTCT CAACCATCAATTGACTCTACCATGGGTGAGGTGATGTTCAGGGTAAACACTGTTGAATAGATATCTGAAGAATTTGAAAG CAACACAAGATGCATTTAAAGGTGGATGGTTTAGGACTGGTGACTTGGAAGTAAAGCATCCTGATGGTTACATAGAACTT AAGGACCGCTCAAAGGACCTTATCATATCTGGGGCCTGGGGGAGAAAATATCAGCTCGATTGAGTTGGAAGATGTGATTT TTAGTCATCCTGCAGTTCTTGAGGCCGCAGTTGTTGGGAGGCCTGATGATTACTGGGGAGAGGCACCTTGTACATTTGTA ACACAGAAGGAAGGTGTAGTGCCTCAGAAGGAGATAATACAATTTTGTCACAAGCGTTTGCCTCGCTATATGGCTTCTCG GACTGTGGTGTTCACTGATCTGCCTAAGACATCAACTGGCAAGACACAGAAATATGTTCTCCGGAAGAACACCAGCCTAC TGTAAAGTACATTTAAAACAAAAGGAATGAAATTGAATCCTTGTCTTTAATGTTATGTGCTTTCTTGTTGTATATTCATT TCTGTATGCATGTAATATTTGTTTCTTTTTCATGAATGGAAAACTTGCAGAAACTCAATTGGACATTTGAACTTGATTTT GTTTTCTCCTTTTTCACTTTTAAAATTTGGTTCACTAGAAGTTTAACTAGATTTATAGAAAAAACTATTATTCTCTTAAA GCCTTCCTTAAAAGAAATGGAATAAACTGCAAAATTGGTCTTTCAATGCATATTACGCTATTAACTTTTCAAAAAAGAAT TATTATTGAATGAATTTTTCCTAAGCAATTATCAAATTCACCTTTTCATAGGTCATTCACCGTGAGGAAGTGGGTTTTAA CCCTTAGATATAATAATAAAATAGTAATGTTGGAGATAAATTACTTAAAACATCTGAGGAATAAATTGTGGTTATTTTAT AACCTGGTACTTATTTACGGAGTATTTCTTAAATTATAAAATGATCATGAACTGGTTTGATTAGTTTTTGGCTGTTGAGG TTGAATTTATGGTCTCCCCCTCCATTAACTGAGGTGAAGCATACATGGCATTCGATGTTGGGTCCACTTTTAGATCAGAC AATTTCTTTAATTTTTAAGGTGATACACTCTGATATTATTGAACTGCTCTCATTTCCCTGATTTGTATGTGGATGTTGTG GAAGAGAAGTGATTTTTATCATGAAGTGTCTGCTCTTGCTAAATTGATGCTGCTGCAGCATCTTATTTCAATTATCAGAG AAAAAAAATGGTTTTTATCCTCTCTGGTGGTGAAAATGGGTTGCTGATGAAATTGATAGTAACTGGTTGAAATGGTTTGG TCAGCTTTTGTTTTTGGCTGTGCTTTTCAATTTTATTTTATTATTGACTTGCCAACATGTATTCTTCACAGTATGCATTC AGATTCGAGTCTTCACAGGGAGCATTCCAAGAAGATCTGAATGCATCTCTCTGTTTTTGTCATTTACTCATTTTCAATAT TATTAAGAATCATTGGTATCTGGTGTGTTCAGATTGGAGCCAATAGGAAAAAATTCATCTGTTTTGTTTTCCATTTGGGT TTCTACGTTCTAGTATGAACATACTAGCAGAAACAAGCTTGACGAATTTGATATTAAACCAGATTCTCTCCTTGTCACTG GACATGATGTTAAAGTAATGCAGTAAATTAATAATGCTGGACAACAGGTACTTACAATTTCTCAGAAATTTGGATTTTAT GTTGATGTGTATGTACTAGTAGCCTTATCAGTGTGTACTCAGAAATGCGGGAAAATGGAGTTGTCTAAGCATGTATTTGG TAAACTTCCCGACTCCTGAGTTAGATGTTGTCTGTTGGAATACAATGCTAGCAGGATTCTCAATCAATTCTCTAGAACAA AATGTTTTGTCTTTCTTTAAGTAGATGTAGCACTTTGGCTTCTTTTCTTCTAAGTTTTCTCTTGCTACCATAATGAGTTC TTGTGCAAAACTTTCTTCTTTATTTAAAGAACTACAGATTCATGCTCAGATCATAAAAGTTGGTTATGTACGTGAGTCGT GACTTGTTTGTGGGGAGTTCTCTTGTAGAAATGTATTGCAAATGTGAGGATATAGGTGGAGCCAGATGCTTTTCGATATG AAATGATACACTGTTATGCACAGATCATAAAATTTGGGCATGTACGTGACATTCGATATGCTTTTCGATATTACTTTCGT TGCTGTTGTAACTGCATTGGTTTGATGAAAGACTTGAAACATTCATTGTAGCGCTGCAAAAAAAATCAACTAATAGACAT TTGGCAATGAGGAAATAAAAGCAAAAGCCTTTCTTTGAAAGATGAGGTTGGAGTAACGGTAGCAACACAAGGTTGGATTG GAAGTGAGACAACAAGGGACAAGTTGTAAAGCTAGAGGAGCGCGCAGAGATAGAAGGAAGAAAGAGTAGTAAGTCCCCGT TGTAAAGCTCATCAAAGCTCACTGTTACTCACTAGTGACAATAGCTTATGTCATTACATGTAATTAGTTCTTTACTGCTT CATATTACACTTAACTATATGTAGCTAGTTCGTTATGGACTTATGCTTAAAGCTTACTATAGTTAGAAGTCTGTTAGCCC CCTTTGCACCACTTATTTATATTATACATTTGCTTACCCAAAAAAAGCCTAGTTATAGCTATGAATAGCTTGCAGCCTTG TACACTCACTGAAACAGTTAGTGAAAATTCTC
CDS sequence (LotjaGi4g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCGCAGTCGCAGGGAGGGAAGTTGGCAAGTCTAGTGCAGTCGTGCATCACCAAGAAAGCCGTGTTACCCGGTAA AGCCGTCCACGCTCGCATCTTCCGCCTCGGCCTCTCCGGCGACACCTTTCTCTCCAACCACCTCATCGAACTCTATTCCA AGTGCGACCGCATCACCACTGCACACCAAGTGTTCGATCAAATTCCTCACAGGAACATCTTCTCATGGAACGCCATTTTG TCTGCTCATTGCAAAGCCCACGACCTGCCAAACGCGTGCCGTTTGTTCCTCCAAATGCCCGAGAGGAACACCGTCTCGTT GAACACCTTAATCACTGCCATGGTACGCGGTGGTTACCAACGCCAGGCGCTCGATACCTATGATTCTTTCATGCTGCATG ATGATGGGGTTGGAGCTAGAGTTAGACCCTCCCACATTACATTCGCTACCGTTTTCGGTGCTTGTGGTGCTTTGTTAGAT GAAAATTGTGGTAGGAGGAATCACGGGGTTGTGATCAAGGTTGGTCTTGACAGTAATATATACGTGGGAAATTCTCTTTT ATCCATGTATGTTAAGTGCGGGCTTCACGGGGATGCTGTTCGTGTTTTTTGGGACATTCCTGAGCCGAATGAGGTTACTT TTACTACAATGATGGGTGGTTTAGCGCAGACGAATCAAGTTAAGGAAGCTTTAGAATTGTTTAGGAACATGTTGAGAAAA GGGATTCCTGTTGATTCTGTTTCGTTGTCCAGCATTTTGGGTGTTTGTGCCAAAGGAGGATCTGGGGAAAGGGAAAAATT TCTCTCTGATTATAGTCATGTACAAGGGGAACAAATACATGCACTCTCGGTTAAACTGGGATTTGAGAGTGACCTCCATT TAAGCAATTCGCTGCTCGACATGTATGCGAAAGTTGGGGACATGGATAGCGCTGAAAAAGTTTTTGTTAATCTGAATCAG CACAGTGTTGTTTCTTGGAATATAATGATTGCTGGGTTTGGGAACAAATGCAACAGTGAGAGAGCTGTTGAGTATTTTCA AAGGATGCAGTGTTGTGGATATGAGCCGGATGATGTTACTTATATTAATATGCTGACAGTGTGTGTGAAGTCTGAGGATG TTAAAACTGGGCGTCAAATATTTGATCGCATGCCGTGCCCGAGTCTGACTTCATGGAATGCCATACTCTCAGCCTATAAC CAGAATGCAGATCACCAAGAGGCTGTTACACTGTTTAGAAACATGCAGTTTCAATGCCAACATCCTGATCGGACTACATT GGCCATTATCCTGAGTTCATGTGCTGAGTTGGGACTTCTCAAGGCTGGAAAACAGGTTCATGCAGTTTCTCAGAAGTTTG GATTTCATGACGATGTGTATGTTGCTAGCAGCCTTATTAATGTGTATTCAAAATGTGGGAAAATGGAGTTGTCTAAGAAC GTGTTTGGTAAACTTCCTGAACTGGATGTTGTCTGTTGGAACTCAATGATAGCAGGGTTCTCAATCAATTCTCTTGAACA AGATGCTTTGTTTTTCTTTAAGCAGATGCGGCAGTTTGGCTTCTTGCCTTCTGAGTTTTCTTTTGCTACCATAATGAGTT CTTGTGCAAAACTTTCTTCCTTATTTCAAGGACAACAGATTCATGCTCAGATCATAAAAGATGGTTATATAGATGATATG TTTGTGGGGAGTTCTCTTATAGAAATGTACTGTAAATGTGGGGATGTAGGTGGAGCTAGATGCTTTTTTGATATGATGCC TGGTAAAAATATTGTGACATGGAATGAAATGATACATGGTTATGCACAGAATGGATATGGTCATGAGGCTGTTTGCCTTT ATAAGGACATGATTTCGTCTGGTGAAAAACTGGATGATATTACTTTCATTGCTGTTTTAACTGCTTGTACCCACTCGGCA TTGGTTGATGAAGGAGTTGAAATATTCAATGCAATGCTGCAAAAATTTGGTATGGTGCCAAAGGTGGATCATTATACTTG CATCATAGATTGCCTGAGCCGAGCAGGGAGGTTTCAAGAAGTAGAAGTTATTCTAGACACAATGCCAAGTAAAGATGATG CAATTGTGTGGGAGGTTGTGCTCAGCTCATGCCGTATTCATGCTAACTTGAACTTAGCAAAAAGAGCAGCTCAAGAACTC TATCGACTAAACCCACGCAATTCTGCCCCTTATGTGCTTCTTGCCAACATGTATTCTTCACTGGGAAGGTGGGATGATGC ACGGGCTATTAGAGATCTGATGAGTCATAACCAGATCCATAAGGATCCTGGTTATAGTCGGAGTGAGTTCATGAATGACG CTCAAATCACTCTGTAA
Protein sequence (LotjaGi4g1v0340200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSQSQGGKLASLVQSCITKKAVLPGKAVHARIFRLGLSGDTFLSNHLIELYSKCDRITTAHQVFDQIPHRNIFSWNAIL SAHCKAHDLPNACRLFLQMPERNTVSLNTLITAMVRGGYQRQALDTYDSFMLHDDGVGARVRPSHITFATVFGACGALLD ENCGRRNHGVVIKVGLDSNIYVGNSLLSMYVKCGLHGDAVRVFWDIPEPNEVTFTTMMGGLAQTNQVKEALELFRNMLRK GIPVDSVSLSSILGVCAKGGSGEREKFLSDYSHVQGEQIHALSVKLGFESDLHLSNSLLDMYAKVGDMDSAEKVFVNLNQ HSVVSWNIMIAGFGNKCNSERAVEYFQRMQCCGYEPDDVTYINMLTVCVKSEDVKTGRQIFDRMPCPSLTSWNAILSAYN QNADHQEAVTLFRNMQFQCQHPDRTTLAIILSSCAELGLLKAGKQVHAVSQKFGFHDDVYVASSLINVYSKCGKMELSKN VFGKLPELDVVCWNSMIAGFSINSLEQDALFFFKQMRQFGFLPSEFSFATIMSSCAKLSSLFQGQQIHAQIIKDGYIDDM FVGSSLIEMYCKCGDVGGARCFFDMMPGKNIVTWNEMIHGYAQNGYGHEAVCLYKDMISSGEKLDDITFIAVLTACTHSA LVDEGVEIFNAMLQKFGMVPKVDHYTCIIDCLSRAGRFQEVEVILDTMPSKDDAIVWEVVLSSCRIHANLNLAKRAAQEL YRLNPRNSAPYVLLANMYSSLGRWDDARAIRDLMSHNQIHKDPGYSRSEFMNDAQITL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 131 | 125 | 6.0E-17 | ||
| PANTHER | 10 | 161 | 152 | 9.8E-147 | – | |
| ProSiteProfiles | 41 | 71 | 31 | 6.884 | ||
| ProSiteProfiles | 72 | 106 | 35 | 9.876 | ||
| TIGRFAM | 74 | 103 | 30 | 0.0013 | ||
| Pfam | 74 | 103 | 30 | 0.0011 | ||
| Gene3D | 132 | 267 | 136 | 7.3E-23 | ||
| PANTHER | 168 | 263 | 96 | 9.8E-147 | – | |
| ProSiteProfiles | 179 | 209 | 31 | 6.675 | ||
| Pfam | 184 | 205 | 22 | 0.41 | ||
| Pfam | 209 | 257 | 49 | 1.7E-11 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.981 | ||
| TIGRFAM | 212 | 245 | 34 | 7.6E-8 | ||
| Gene3D | 268 | 386 | 119 | 2.0E-23 | ||
| PANTHER | 275 | 384 | 110 | 9.8E-147 | – | |
| ProSiteProfiles | 291 | 321 | 31 | 7.848 | ||
| Pfam | 296 | 315 | 20 | 0.031 | ||
| ProSiteProfiles | 322 | 356 | 35 | 10.578 | ||
| Pfam | 322 | 369 | 48 | 1.3E-10 | ||
| TIGRFAM | 324 | 357 | 34 | 6.1E-8 | ||
| ProSiteProfiles | 357 | 387 | 31 | 6.873 | ||
| ProSiteProfiles | 388 | 422 | 35 | 8.901 | ||
| Gene3D | 389 | 539 | 151 | 3.9E-26 | ||
| PANTHER | 390 | 446 | 57 | 9.8E-147 | – | |
| Pfam | 391 | 416 | 26 | 0.0085 | ||
| TIGRFAM | 391 | 423 | 33 | 0.0021 | ||
| ProSiteProfiles | 423 | 457 | 35 | 6.215 | ||
| PANTHER | 443 | 537 | 95 | 9.8E-147 | – | |
| ProSiteProfiles | 458 | 488 | 31 | 7.355 | ||
| Pfam | 463 | 488 | 26 | 0.039 | ||
| ProSiteProfiles | 489 | 523 | 35 | 10.49 | ||
| TIGRFAM | 491 | 524 | 34 | 3.0E-4 | ||
| Pfam | 491 | 521 | 31 | 2.1E-4 | ||
| ProSiteProfiles | 524 | 558 | 35 | 6.511 | ||
| PANTHER | 531 | 754 | 224 | 9.8E-147 | – | |
| Gene3D | 540 | 639 | 100 | 4.4E-21 | ||
| ProSiteProfiles | 559 | 589 | 31 | 7.706 | ||
| Pfam | 589 | 636 | 48 | 8.8E-11 | ||
| ProSiteProfiles | 590 | 624 | 35 | 11.148 | ||
| TIGRFAM | 592 | 625 | 34 | 2.7E-7 | ||
| ProSiteProfiles | 625 | 660 | 36 | 8.32 | ||
| Gene3D | 640 | 774 | 135 | 1.4E-15 | ||
| SUPERFAMILY | 645 | 749 | 105 | 3.16E-5 | ||
| ProSiteProfiles | 661 | 691 | 31 | 7.848 | ||
| Pfam | 664 | 691 | 28 | 0.0089 | ||
| TIGRFAM | 665 | 691 | 27 | 4.8E-4 | ||
| ProSiteProfiles | 727 | 761 | 35 | 7.552 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0340200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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