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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0349700 |
| Transcript ID | LotjaGi4g1v0349700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|D3YBB5|D3YBB5_TRIRP Galactose oxidase; Found in the gene: LotjaGi4g1v0349700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72862450..72866558) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGATGGAAGAGTACCATAGAAGGAACAAGAAACGTTACTTTCTCCTATCTATATATAAAATTATAACATCACGGACT TCATATATACTACAAAGTGATCAAGTGCACCAAAATGAAGAGATACAGCCGCAGAGGACGAACAAACATGAACAAAAAGA CCCTCAATCTACCAATGGATTTGATAATTCAGATCCTGTTGAGGTTGCCAGTGAAGTCTCTTGTACGTTTCAAGTGCGTT TGTAAGTCATGGCTTTCACTCATCACTGATCCCCACTTTGCAAAATCACATTTTCAACTAGCTGCGGCACTCACCCATAG GCTCTTGTTAGCACCAGCTTCTGTTCCTGAAACTCGATCTATAGACTTAGATGATGCATCACTAAACGATGATTCTGCAT CTACTACAATAGAACTTAAATTCATGCTTCCTTCATATTACTTTCATCTTAGTTCGTGTAGAGGGTTTCTGTTTTTGGAT TGTAATCCAAACCTGTTTCTTTGGAATCCATCCACTGGTGTTCACAACCAAATACCACATCCACCTATTTCCTCCAATGT GGATGCCTTCCTTTTCACCTATCTATATGGTTTTGGCTACGACCCATCACAAGATGACTATTTAGTGGTTCTAGCTTCAT ATGATCCAAACTCAGCTGATTATTTAACCCATTTGGAGTTTTTCTCTTGGAGAGCCAATACATGGAAAGAAATTGAGGGT ACCCATTTGCCTTATATGAACGCTGGCGATGATCCCAGAGTTGGGTCACTCTTGCATGATGCTATTCATTGGGTGGCTTT TCGTCACGATATAAATGTTGATCTTATTGTTGCATTTGATTTAGTTGAAAAAAGACTTTCTGATATACCTCTGCCAGATG AATTTTACCATGAATCTGCAGATTATGATGTGTGGGTGTTTCGAGGATTTCTCAGTCTATGGGTTGTGGAGGCTGATACA GTTAGTATATGGGTGATGGAAAGGTACAAATTGCAGTCATCTTGGGTTATGACTCTTGCTCTATCTTTAAATGACATTCC CAATAAATACTTTTCCCCAATATGTTGTACAAAAAATGGTGATATTGTTGGAACAGATGGTTATAAGGAGCTGGTGAAGT ATAATGGCGAAGGAGAGGTACTAGAGCACTGCTCTTATGATGAATATCCTTATACTTATGTTTCCCTGGCCATGTATACA GAGTCTCTGCTTTCACTCCCTGCTGGTGAACAAGTTGAAGATGTGTGATGATAACAAACAAGAAGAATGAGGTTGTGTAA TATGCTATATGACTTGTAAGAATGAGGTTTCACATCTTATTTGTATTATGATGATATATAATTTTTTTTTGAACTAGATG ATATATAATATTAATGGAATCTAAGTTTTTTTAAAGACGAACCTTACAAAAACTATTACTTACAACAGAATAACTCAATA AAGTATGTGAAGACTGAAGGGATTGAAAATGATACCATATCAAAAGGTCCCTAGTATTATCAAAATGCCATAAAAGAACT GGCGTCATTTCATTTATGGAGTCAACAACACAATCTCCATTGTGCAAACCAATGGTTAAAAGAAACTGCAATCCTAAACC ATGCATCATTGGCTTAAAATTAAAGTATTGTTATCATCTATGCAAGAAAAACATTGGAATTTTTGTTATAAAGGCATAAA TGTCACTAGAAAGAACATCACAAACTATAATGTTTAATTGTGCAGCTATGTACAACCCCGCACAAAATAGAAGTATTCAC CTATACCAACAGAGCTTCCTTCCACCCTCTCGCAAAATCTCAGAAGCAAGTTTATACGTTTCAATTGAGATGCAGTTTCT CTTAAACTCCATAACATCAAATTCCTCAGTTTCTGAGAGCTACTCTAGGATTCAATGTCAGGAAAACACCATCATCCGCA TTTCTTGTCCATCGGTGTAAGATGTAGCGAGACGGAACTTCTCTCAATTCCAATATTTGGAAAACCCTTAAAACATGTCT ACAAAGGACACCTTCATGCTCAAACATCTGACAGCTGCAACTAATGCCTAGATTGGACGCAATACATGTAACAAAATGCT TCTCCAGATCATTCCCGCACCTCCGCACCAAATATCTGCTAAGCCCCCCTTCTTCATAGCTTTTATATCCGAGATAACTA TAGCATTGCAAAAGCTCTTTTTGAAATACTTTGAATATGGTAGGAGTGTAAAGCCTTCTAAATTGTTCTTCAACCGGTTC TTTTGTTTGCAAAGATGTTTGAAAATTGGAAGCATTTAAATCCTCTTTTCTTTCTTCTTCCCGACGTCGCTCAAGGCCTC TCTCATACCGTGAAATGAACTCCATGACAGGTGTTTGGGCATTTAAAAGTGCACCAAAGAATGAATCAACACTATCATTA ATGGGAATGCCAGCGAAAAAAAATCCCCTCAAATATATTGGAACCCACGATGCACGCTTCTCATACATCTCTTTTAACCA AGCATTATCCTTCAATCCGTATTTGTTGAGCAAGGCATTCCATGCAGTGTCAAATTCGTCAACTGCTTGACTCTGGTAAA CACACTTTTCATAATCATTTAAAAATTCATTGCCCATCAGACCCAGATTATCTTGTACCTTTTCCTTAATTTGCCATGAT GAAAAGCGATGATGGGTTTCCGAAAAGACTTTAGCTATTGCCGTCTGGATTGCAATGTCTTGATCAGCTATTATTGAGAG GGGTTGCCGACCAGACATTGCCTTCAGCCAAGTCTGAAACAACCAGGTGAAAGACTCCTCAGATTCATCAGCAATTAGAG CACATCCAAGAAGCACAGGTTGCTTGTGATGGTTAACGCCAACAAAAGTAGCGAAGGGTACCAAATAGTCAGTTTTTCGA TAAGACGTGTCTAAAACAAGGACATCGCCAAACTGACTACATGAATATCTAGATCTTCCATCAGCCCAAAATATGCTCAT GCATTTACCGTTTTCAACTTCCACAGCATAAAAGAATCCTGTATCTTCGGCTTGTCTTGATTGGAAATACTGTAAAAGCA CAGTATACCAGTCATCTTTAATGTGATTTTGTCTACACTCTTTTTCCATATCCAGATTATGATTGTAGTCTTTTTCGAGA CGGTCCACTACCCACTTGCCAGATGACTGACTCTTAATCCTCAAATAAACCCCACAACCAACTCTCGAAGGGTGCTGAAA CCCTTCCTTCGAGCACACAAATCGACGGGATGTGATCGAGCCATCATTCTTCGAACGAAACAGCTGACCAATTCGGACTC CAAAACCAACGGATGCTGCATATGCATGATAAAATTGGTAGGCTTCATTAGCTGAATTGAACACTTGACCTACAAATGGT TCAAACTTAGACTGTCCATCACCCCCTTCTTTTCTCAGGCGTTTGAAATCAATAACCTTGGCTTCTCCAAGCAACAATTT CTTCTTCCTTCGCCTGTGGGGCACATTAACAAAAGAATTGATAGTTGCAGCACCCTTCTGCTTCAAATCTGGATTGCAAT ATGCACTTTCAGTTTCAAGATCATGATTGTGGCTCTTGAAGCAATGATCAACAACCCACTTCCCAGAATCTTGTCTTTGC ACCCTTATGAATGCTGGACAACCTGTTCTTGAACTGAGCTGATAACCCTCCTTTGAGCAGACAAATCTTCGAGAAGAAAC AGACCCATCAGTCCTCGACCGGTACAGCTGACCAATCCGAACCTTAAATCCTGTTCGCTTTGCATATGATTCATAAAACT TAAGCGCCTCATCTGATGTATCAAATTCTAACCCTATGTATGGTTCACAGGAAAATTCAATTACTTCAACAACAACACTA GCATTGTTCATTGCTAGTTCAGTACCCACTGGGTTTTCCATTGCAATCATCATCCCAAATTCAAATTCTCCTCCATAAAA ATCTAACAAAATCTGAGACAAAATCACATCAATTCAAAAAGGGGGAAAAGGAATAGATTGATGAAAGCTAGGGTTTTGTG AAGAAAATTTACCTCAAGGTTGCAGGAATCGATTTGGTGGTGAAAGTGAGATGGGGATGGTGTATGTTGTGAAGTGTGTG GGGGGAATTTATATGGATCAAGAAAATTT
CDS sequence (LotjaGi4g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGATACAGCCGCAGAGGACGAACAAACATGAACAAAAAGACCCTCAATCTACCAATGGATTTGATAATTCAGAT CCTGTTGAGGTTGCCAGTGAAGTCTCTTGTACGTTTCAAGTGCGTTTGTAAGTCATGGCTTTCACTCATCACTGATCCCC ACTTTGCAAAATCACATTTTCAACTAGCTGCGGCACTCACCCATAGGCTCTTGTTAGCACCAGCTTCTGTTCCTGAAACT CGATCTATAGACTTAGATGATGCATCACTAAACGATGATTCTGCATCTACTACAATAGAACTTAAATTCATGCTTCCTTC ATATTACTTTCATCTTAGTTCGTGTAGAGGGTTTCTGTTTTTGGATTGTAATCCAAACCTGTTTCTTTGGAATCCATCCA CTGGTGTTCACAACCAAATACCACATCCACCTATTTCCTCCAATGTGGATGCCTTCCTTTTCACCTATCTATATGGTTTT GGCTACGACCCATCACAAGATGACTATTTAGTGGTTCTAGCTTCATATGATCCAAACTCAGCTGATTATTTAACCCATTT GGAGTTTTTCTCTTGGAGAGCCAATACATGGAAAGAAATTGAGGGTACCCATTTGCCTTATATGAACGCTGGCGATGATC CCAGAGTTGGGTCACTCTTGCATGATGCTATTCATTGGGTGGCTTTTCGTCACGATATAAATGTTGATCTTATTGTTGCA TTTGATTTAGTTGAAAAAAGACTTTCTGATATACCTCTGCCAGATGAATTTTACCATGAATCTGCAGATTATGATGTGTG GGTGTTTCGAGGATTTCTCAGTCTATGGGTTGTGGAGGCTGATACAGTTAGTATATGGGTGATGGAAAGGTACAAATTGC AGTCATCTTGGGTTATGACTCTTGCTCTATCTTTAAATGACATTCCCAATAAATACTTTTCCCCAATATGTTGTACAAAA AATGGTGATATTGTTGGAACAGATGGTTATAAGGAGCTGGTGAAGTATAATGGCGAAGGAGAGGTACTAGAGCACTGCTC TTATGATGAATATCCTTATACTTATGTTTCCCTGGCCATGTATACAGAGTCTCTGCTTTCACTCCCTGCTGGTGAACAAG TTGAAGATGTGTGA
Protein sequence (LotjaGi4g1v0349700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRYSRRGRTNMNKKTLNLPMDLIIQILLRLPVKSLVRFKCVCKSWLSLITDPHFAKSHFQLAAALTHRLLLAPASVPET RSIDLDDASLNDDSASTTIELKFMLPSYYFHLSSCRGFLFLDCNPNLFLWNPSTGVHNQIPHPPISSNVDAFLFTYLYGF GYDPSQDDYLVVLASYDPNSADYLTHLEFFSWRANTWKEIEGTHLPYMNAGDDPRVGSLLHDAIHWVAFRHDINVDLIVA FDLVEKRLSDIPLPDEFYHESADYDVWVFRGFLSLWVVEADTVSIWVMERYKLQSSWVMTLALSLNDIPNKYFSPICCTK NGDIVGTDGYKELVKYNGEGEVLEHCSYDEYPYTYVSLAMYTESLLSLPAGEQVEDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Gene3D | 6 | 102 | 97 | 1.7E-9 | – | |
| PANTHER | 11 | 366 | 356 | 8.1E-112 | – | |
| PANTHER | 11 | 366 | 356 | 8.1E-112 | – | |
| ProSiteProfiles | 13 | 63 | 51 | 10.292 | ||
| Pfam | 17 | 55 | 39 | 8.2E-10 | ||
| SUPERFAMILY | 18 | 132 | 115 | 2.49E-17 | ||
| SMART | 19 | 58 | 40 | 1.4E-7 | ||
| Phobius | 23 | 31 | 9 | - | – | |
| Phobius | 32 | 35 | 4 | - | – | |
| Phobius | 36 | 377 | 342 | - | – | |
| SUPERFAMILY | 110 | 361 | 252 | 5.23E-6 | ||
| TIGRFAM | 113 | 325 | 213 | 2.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0349700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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