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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0351300 |
| Transcript ID | LotjaGi4g1v0351300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA dimethylallyltransferase; TAIR: AT5G19040.1 isopentenyltransferase 5; Swiss-Prot: sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic; TrEMBL-Plants: tr|Q1W5W4|Q1W5W4_LOTJA Adenylate isopentenyltransferase; Found in the gene: LotjaGi4g1v0351300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73009164..73011181) extracted from Lotus japonicus Gifu genome v1.2.
GACATGATGACTTATGATGAGATGAGTAGAGAATTATATTATCAATGCATGACGGGTTCATTTGAGCCTCCAAACTAAAA AGTGGGCCATACAAACTCCGAGTTTCGTTTATATAAATATCAGAATTTGCCACACCAACACACCATAAACTCCAGAGAGT TACTCTCAAATCTGCTTCCATAGCTCTATCCCCTGCAAACACCACAACTTGCTGAGCTCCTTAATAGAATCAAGTTCTCC TTTCTTTCTCAATAGTCACACATAAAACCAAGTCACACTCAACACAAAAATCACCATACTCTTCAAGGTACGTCCTATGA ATTACTATAGGTGGTCCTGGTCCATGTCTTTTTGCTTTACATGGATAAAAACGTTAACATAGATATGCTTGTTTTGTCTT TGGTATATCTTGAAGGGAAATTTTTTTAAACTTTTAATTTCTATTAATTTCTTCCATATATACCAAGTACATGGCATTGC TTGCAGATTACAATTAAGCTCATAATCATCATCATCATATACTCTGGATCCATTCTCTCCCCCTCCTTAGATTCTATTTG TAGTTGGATTCTAATAAACTAATCTTCATATTAGCTGGTTTTGCTAGCACAATTGATAACATCACTGAATATAAAAAACG TTTGGTCAACTTGGCAGGTTCCATTTCACACAAACAAGAAAAAAATGAATATTTTTTCGGTGTTTGCCTCCTCCTCCTAC AAGCCTCTAGTGATGAGCAATTTTCAACCTGCGCTCACCACCACCATGGACTCCCTCTTCCACCACAGCAAGGACAAGGT GGTTGTCATCATGGGCGCCACTGGCTCCGGAAAATCCAAGCTGGCAATCGACCTCGCCACACACTTTCCACCGGCGGAGG TTGTCAACTCCGACAAGATACAAATGTATTCCGGCCTCGACATCACAACCAACAAGGTAACCGAGGAAGAGTGTCGTGGG GTCCCACATCATCTTCTCGGAACATTTGAGAATCCCAACATGAATTTCACTGCCAGTGATTTCTGCAAACAAGCTTCCTC CGCCATTGGCTCCATTGTGAAGAGGGATGGCCTTCCCATCATAGCTGGTGGCTCCAACTCCTTCATCGATGCTCTGGTCA ACCACACCCCTGAATTCCGCTTCAACTATGAATGCTGCTTCCTCTGGGTCGATGTCTCTCTTCCAGTCCTCCACAATTCC CTCTCCAGACGCGTCGATCGCATGATCGATGCGGGCCAGGTTGATGAGGTGCGTCAATTCTTCCTCAACGCACATCATCA GTCTGACTACACGAGAGGGATAAGACGAGCGATTGGGGTCCCTGAGTTCGACCGCTTTCTGAGAGCGGAGGCCTCAGGGG CCGATGAGAGAACGAAAAGGAAGCTCCTTGACACTGCCATTGCTGAACTCAAGGTGAACAACTGCAACCTGGCGATCCGC CAGGTTCAGAAGATTCACCGGCTCTACAATATGTGGAAGAGGAGTATGCACCGGCTAGACGCCACCGAGGTTTTGCTCAA GAATGGTTGTTGTTCCCCTGAGGAAGCAGAGAAGGTTTGGGAGGATCACGTGTTTAGCAAAAGTCGCAGGATCATTCAAA AGTTCTTGTACGAGGAAACAACACACCGTGTTGCTTCTAAGAATAATGGTGTGATTTCATCTTCTTCTTCGAATTCAAGT ACCCCATCAGCCATGGCTGCGGTAACCCATTAGAGATTATTCTAATAGAAGATTATGAAACAAACGTCACCACTAACATG CCTCCGATGACATTACCTGAAATTCTATACTTTTTTTTTTTGTTCTTTTGGCCTTTGGTTTAGGGTCATATCATTTTGCT ATAGTAAAATTAAAAGCTTTACTTACTACATATATACTATAAAGAAATCTTTTGTTATACTACTTCATAGATTGTGTATT TATGTGAGCAATATTGTAATGTGTTACAAGAACCGATATACTTAACAAGGATCCGTGAATTCATGAATTTATTAATGGAG CTCAGCAAATACAATGCC
CDS sequence (LotjaGi4g1v0351300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATTTTTTCGGTGTTTGCCTCCTCCTCCTACAAGCCTCTAGTGATGAGCAATTTTCAACCTGCGCTCACCACCAC CATGGACTCCCTCTTCCACCACAGCAAGGACAAGGTGGTTGTCATCATGGGCGCCACTGGCTCCGGAAAATCCAAGCTGG CAATCGACCTCGCCACACACTTTCCACCGGCGGAGGTTGTCAACTCCGACAAGATACAAATGTATTCCGGCCTCGACATC ACAACCAACAAGGTAACCGAGGAAGAGTGTCGTGGGGTCCCACATCATCTTCTCGGAACATTTGAGAATCCCAACATGAA TTTCACTGCCAGTGATTTCTGCAAACAAGCTTCCTCCGCCATTGGCTCCATTGTGAAGAGGGATGGCCTTCCCATCATAG CTGGTGGCTCCAACTCCTTCATCGATGCTCTGGTCAACCACACCCCTGAATTCCGCTTCAACTATGAATGCTGCTTCCTC TGGGTCGATGTCTCTCTTCCAGTCCTCCACAATTCCCTCTCCAGACGCGTCGATCGCATGATCGATGCGGGCCAGGTTGA TGAGGTGCGTCAATTCTTCCTCAACGCACATCATCAGTCTGACTACACGAGAGGGATAAGACGAGCGATTGGGGTCCCTG AGTTCGACCGCTTTCTGAGAGCGGAGGCCTCAGGGGCCGATGAGAGAACGAAAAGGAAGCTCCTTGACACTGCCATTGCT GAACTCAAGGTGAACAACTGCAACCTGGCGATCCGCCAGGTTCAGAAGATTCACCGGCTCTACAATATGTGGAAGAGGAG TATGCACCGGCTAGACGCCACCGAGGTTTTGCTCAAGAATGGTTGTTGTTCCCCTGAGGAAGCAGAGAAGGTTTGGGAGG ATCACGTGTTTAGCAAAAGTCGCAGGATCATTCAAAAGTTCTTGTACGAGGAAACAACACACCGTGTTGCTTCTAAGAAT AATGGTGTGATTTCATCTTCTTCTTCGAATTCAAGTACCCCATCAGCCATGGCTGCGGTAACCCATTAG
Protein sequence (LotjaGi4g1v0351300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIFSVFASSSYKPLVMSNFQPALTTTMDSLFHHSKDKVVVIMGATGSGKSKLAIDLATHFPPAEVVNSDKIQMYSGLDI TTNKVTEEECRGVPHHLLGTFENPNMNFTASDFCKQASSAIGSIVKRDGLPIIAGGSNSFIDALVNHTPEFRFNYECCFL WVDVSLPVLHNSLSRRVDRMIDAGQVDEVRQFFLNAHHQSDYTRGIRRAIGVPEFDRFLRAEASGADERTKRKLLDTAIA ELKVNNCNLAIRQVQKIHRLYNMWKRSMHRLDATEVLLKNGCCSPEEAEKVWEDHVFSKSRRIIQKFLYEETTHRVASKN NGVISSSSSNSSTPSAMAAVTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 338 | 325 | 1.7E-146 | – | |
| PANTHER | 14 | 338 | 325 | 1.7E-146 | ||
| Gene3D | 36 | 308 | 273 | 7.1E-107 | – | |
| SUPERFAMILY | 40 | 150 | 111 | 1.13E-11 | ||
| Pfam | 73 | 149 | 77 | 1.1E-17 | ||
| Pfam | 157 | 255 | 99 | 5.4E-9 | ||
| Gene3D | 166 | 269 | 104 | 7.1E-107 | – | |
| MobiDBLite | 320 | 342 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi4g1v0351300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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