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LotjaGi4g1v0354300.1

Overview

Field Value
Gene ID LotjaGi4g1v0354300
Transcript ID LotjaGi4g1v0354300.1
Lotus japonicus genome version Gifu v1.2
Description ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|I1K3B5|I1K3B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0354300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:73276505..73278781) extracted from Lotus japonicus Gifu genome v1.2.

GTATCCAGTTAAGGAAAGGAAAAAACAAAGGGAGTTTTTGTCGACACATGATTAAGATCCAACAACCTTGACGCATTCCA CCTCGTGAATTAAGGACAAAATTACACGATGATGACACAAACAAAATAAACAACAACGTGCACAGCACATCATCATTCTG TCTCTGTGTGTTGTTCTTTCCAATCTCACAACATCCACACGTCTCTAATTAACCACACACAATCCAGAGTAATTCATCAA CGTACAAAAACTGAATAAACAGAAAATTTTCACAAGAGGGAAAACAAGGATCAAGCTCCACAAGCTGGTGGGAAAAAAGG GTAGGAGAAACCACCCTCCTTACCCTCTGTTTTCACAAAGTGGTGTTTGGCTTCCCCTGTTTTTGCAGAAAACAGAGCAA AATACAGAGAGAAAGAGGGAAATGAGGGTATGGAAAAAGGCCACAGGAGCTCTCAAAGACAAGAACAGCATTTGGGTTGC GAAATTCTCTCGAAAGGGACCATTTCGAAACCCTGATCTTGAAACGGTGATCATCAAGGCTACGAGCCATGATGAACACA GCATTGATTGCAAGAATGTGCAGAGAGCCTTCAAATGGCTACACACCTCGCCTCTGTATTTGAAACCTCTGGTTTGGGCT CTGTCGATTCGAATGCAAAAGACTAAGAGTTGGGTTGTTGCTCTCAAAGGCTTGATGCTCATTCATGGCGTTTTCTGCTG TGATCTCCCTGTGGTGCAGAGAATGGGGAGGTTACCTTTTGATTTCTCAAATTTCTCTGATGCCCATTTGGCTCCTGCAA AAGCTTGGGGATTCAACGCTTTCGTTCGCGCCTATTTCGCGTATTTGGATCAGAGATCAGCTTTTGTTTCCTCTGAGGTT AAGAAGCAGAAGAACAAGGAGGGTGAAGTTGAGGGGACATTGATGGAGGAGCTTGAGAAGTTGCAGAAATTGCAGGCCAT GATTGACATGCTTCTGCAGATCAAGCCGAGGAACACGGACATGAACGTTGGTCTTGTTCTTGAGGCCATGGATTGTGTCA TTGTTGAGGTTTTTGACGTGTATAGCAAGTTTTGTAAGAAGATTGCAACGGTGTTGTTGAGGATTTATGATGTAGGTGGG AAATTGGAAGCGAGTATGGGACTCAAGGTTCTGCAGAAAGCATCTGTTCAGAGAGATGAACTTTCTGAGTACTTTGAGTT TTGCAGGGTAATTGGTGTTCTTAATGCCTCTCAATGCCCCAAGATTGAGAGAATCCCTGAAGAAGATATTAGAGATCTTG AGAGGATAATCAGTGGTGCCTCTGCAAAGAAAAGTAATAATGGTGTTGTTGATGGGAATGAGGAGGAGAAGGCCATTGTG GTGAGAGATTTCTCTGCCTCTTCAATCATTGAATCAGAGAAAGGTTTGATTACTGTGATCACACACCAATGGGAGGTGTT TGATGATGATATTTTGGTTGATGTTAGAGGGAATAATAAGGTTTGCAATGGTGTTATTGGCACAACAACAACCAACCCTT TTGAGGAATCATATAGCCTTGTACCTTATGTTCCTCATGTTGCTCACAATCAAGTTCTTCCTGATTTAATTAGTTTGTAG AATCATAGCTTTGAGGTTTATGCATGGTCCACTTTTCATTTTACAAGATTCATTATGTTATACATGTAAAGGGTTTTGAA TTGCGGCCACAACGTAAAGGGCTCTCGTGATGGCACAACCGCAACTGCGACCACAAATAAAAGGTTTTGGAGCCCCTCCA ACGGCTTTGCGGTCGCAATTGCAGCTGCATCAACCCGCATTTGTCCGCAATTCCGCACTGCATCCGCAACCTCAACCGCG ATTTAAAACCCTTTGCATGATGTATGATGTATCCATACTTTTGGGAGAAAGGTGAGCATGGGGAAGTGGCATGTACATCC AAATGGTTAATGTTCTTCAAATGTCTTCTCCACAATAGCAGAAGAGTTTTTTTGCTCCACCTTCTTCTGTATTAGGAAAA TTTTATGACATATGTAAAATTCTGTTATTGTTAATGTTATATGATAATTAGATATTGAAATTACAGAGAATGTCTTGACA TCTTCTTTATTTTCTCCCTTTTGACATTGACTTGTTTTGAAGTTGAACATTTAAAAGATTGAATTTGGATGTGTATAGAA TCTGTAGATCATGGACCTAACAGAATAATGTTTTATTAACATCTCTATTCCACCTCCACCTTGAGCCCTTGATAAATATA AAGAGAAATGATATATGATGAAAAAGGTGGTTTTCAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0354300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGGTATGGAAAAAGGCCACAGGAGCTCTCAAAGACAAGAACAGCATTTGGGTTGCGAAATTCTCTCGAAAGGGACC ATTTCGAAACCCTGATCTTGAAACGGTGATCATCAAGGCTACGAGCCATGATGAACACAGCATTGATTGCAAGAATGTGC AGAGAGCCTTCAAATGGCTACACACCTCGCCTCTGTATTTGAAACCTCTGGTTTGGGCTCTGTCGATTCGAATGCAAAAG ACTAAGAGTTGGGTTGTTGCTCTCAAAGGCTTGATGCTCATTCATGGCGTTTTCTGCTGTGATCTCCCTGTGGTGCAGAG AATGGGGAGGTTACCTTTTGATTTCTCAAATTTCTCTGATGCCCATTTGGCTCCTGCAAAAGCTTGGGGATTCAACGCTT TCGTTCGCGCCTATTTCGCGTATTTGGATCAGAGATCAGCTTTTGTTTCCTCTGAGGTTAAGAAGCAGAAGAACAAGGAG GGTGAAGTTGAGGGGACATTGATGGAGGAGCTTGAGAAGTTGCAGAAATTGCAGGCCATGATTGACATGCTTCTGCAGAT CAAGCCGAGGAACACGGACATGAACGTTGGTCTTGTTCTTGAGGCCATGGATTGTGTCATTGTTGAGGTTTTTGACGTGT ATAGCAAGTTTTGTAAGAAGATTGCAACGGTGTTGTTGAGGATTTATGATGTAGGTGGGAAATTGGAAGCGAGTATGGGA CTCAAGGTTCTGCAGAAAGCATCTGTTCAGAGAGATGAACTTTCTGAGTACTTTGAGTTTTGCAGGGTAATTGGTGTTCT TAATGCCTCTCAATGCCCCAAGATTGAGAGAATCCCTGAAGAAGATATTAGAGATCTTGAGAGGATAATCAGTGGTGCCT CTGCAAAGAAAAGTAATAATGGTGTTGTTGATGGGAATGAGGAGGAGAAGGCCATTGTGGTGAGAGATTTCTCTGCCTCT TCAATCATTGAATCAGAGAAAGGTTTGATTACTGTGATCACACACCAATGGGAGGTGTTTGATGATGATATTTTGGTTGA TGTTAGAGGGAATAATAAGGTTTGCAATGGTGTTATTGGCACAACAACAACCAACCCTTTTGAGGAATCATATAGCCTTG TACCTTATGTTCCTCATGTTGCTCACAATCAAGTTCTTCCTGATTTAATTAGTTTGTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0354300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRVWKKATGALKDKNSIWVAKFSRKGPFRNPDLETVIIKATSHDEHSIDCKNVQRAFKWLHTSPLYLKPLVWALSIRMQK TKSWVVALKGLMLIHGVFCCDLPVVQRMGRLPFDFSNFSDAHLAPAKAWGFNAFVRAYFAYLDQRSAFVSSEVKKQKNKE GEVEGTLMEELEKLQKLQAMIDMLLQIKPRNTDMNVGLVLEAMDCVIVEVFDVYSKFCKKIATVLLRIYDVGGKLEASMG LKVLQKASVQRDELSEYFEFCRVIGVLNASQCPKIERIPEEDIRDLERIISGASAKKSNNGVVDGNEEEKAIVVRDFSAS SIIESEKGLITVITHQWEVFDDDILVDVRGNNKVCNGVIGTTTTNPFEESYSLVPYVPHVAHNQVLPDLISL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22951
1 391 391 6.7E-152 –
PANTHER
PTHR22951:SF19
1 391 391 6.7E-152 –
Gene3D
G3DSA:1.25.40.90
4 152 149 8.1E-25
IPR008942
ProSiteProfiles
PS50942
25 156 132 15.343
IPR013809
Pfam
PF07651
32 290 259 2.2E-56
IPR011417
SUPERFAMILY
SSF48464
32 149 118 1.66E-19
IPR008942
CDD
cd16987
33 148 116 1.3378E-48 –
TMHMM
TMhelix
83 105 23 - –
Gene3D
G3DSA:1.20.58.150
153 305 153 8.8E-24
IPR014712
Coils
Coil
167 187 21 - –
SUPERFAMILY
SSF89009
169 291 123 1.29E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005543
Molecular function Phospholipid binding Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
Subterm of
GO:0005545
Molecular function 1-phosphatidylinositol binding Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol.
Subterm of
GO:0030136
Cellular component Clathrin-coated vesicle A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
Subterm of
GO:0030276
Molecular function Clathrin binding Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles.
Subterm of
GO:0048268
Biological process Clathrin coat assembly The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0354300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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