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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0359300 |
| Transcript ID | LotjaGi4g1v0359300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAI-like protein 1; TAIR: AT2G01570.1 GRAS family transcription factor family protein; Swiss-Prot: sp|Q5BN23|RGA1_BRACM DELLA protein RGA1; TrEMBL-Plants: tr|B2BA71|B2BA71_PEA CRY; Found in the gene: LotjaGi4g1v0359300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73802466..73805395) extracted from Lotus japonicus Gifu genome v1.2.
TCGAGCCTGTCACGAGCGTTTCCTTCTTTTCTTTTTACACATACATTATTTTTCTCTCTGTTTTTATTTTTTAATCTCCT CAAAAGAAAAATAAAAAATATATATATATTTGTAGAAAAAAATTAAGAAATTAGGATATATATATATATTATTGGCCTAT TTGGTGTGGTGTGCGTGAAGACTGAAGAAAAAGCCGCACTCACTTGTGAAAAACACAAAAGAAAGAAGGAAAAAGAAATC CGCAGGAAAATTGGTGGCAGAGAGAGAGAGAGAAGAAGAAGATGAAGAGAGAGCACGAGCAAGTGAGTGGGAAGAGCTGG ATGGGAGGCGGCGGTGTTTGGGAGGAGGAAGACGAGCTTCTCGCGGTGGTGGGTTACAAGGTGAGGTCATCAGACATGGC GGAAGTTGCTCAGAAGCTTGAGCAACTAGAAGAAGCCATGTCCGATGACACCATCGCTCACCACCTCTCATCAGATACCA TCCACTTCAACCCCGCCGACATCGGCACATGGCTTGAAACCATGCTCTCCAATTCCAATTTCGACCCCACTCCGGCAACC ACCACCACCTCCGATTACGACGACCTCAAAGCCATTCCGGGAAGAGCAATCTACGCTCCTGATTCCCCTTCCTCCAGCAA ACGCACCAAAACCTCCTCCTCTTCCTCCCCCTACGCCGAGTCGTCAACTCGCTCCGTCGTGGTTGTGGATTCCCAGGAGA ACGGGATCCGGCTCGTGCACTCACTCATGGCCTGCGCGGAGGCTGTCGACCGGAGCAACCTCGCCGTCGCGGAGGCGCTG GTGAAGCAGATCGGACACCTCGCCGCGTCGCAAGAAGGCGCGATGAGGAAGGTCGCTACCTATTTCGCCGAAGGCCTTGC GAGAAGAATCTACGGCGTTTACCCTCCTCAGCCGCAGCAGCAGCAGCATTTCTTCTCCGATTCGCTCCAGATCCATTTCT ACGAGACTTGCCCTTACCTCAAATTCGCTCACTTCACCGCCAATCAAGCAATCCTCGAAGCGTTTCAGGGAAAGGATCGT GTTCACGTCATCGATTTCGCCATCAACCAAGGGATGCAGTGGCCGGCGTTGATGCAAGCCCTCGCGCTTCGCCCCGGTGG TCCTCCCGCGTTCCGACTCACCGGAATCGGACCTCCGGCACCAGACAACTCCGACCACCTCCAGCAGGTTGGGTGGAAGC TCGCTCAGCTGGCGGAAACCATCCACGTCCAGTTCGAGTATCGCGGCTTCGTCGCCAACAGCCTCGCCGATCTCGACGCC TCCATGCTCGATCTCCGTCCGCCGGAGGAAGAATCCGTGGCCGTCAACTCCGTCTTCGAGCTCCACAAGCTGCTCGCGCG CCCCGGCGCGCTCGAGAAGGTCTTCTCTGTCATCCGGCAAGTCCAGCCGGAGATTCTCACCGTCGTGGAGCAGGAAGCTG GCCACAACGGCGCTAGTTTCCTAGACCGGTTCACTGAGTCGCTCCACTACTACTCAGCCCTCTTCGACTCGCTCGAAGGC TCCTCCGCCGTCGAGTCGCAGGACAAGGCCATGACGGAGATCTACCTGGGGAAGCAAATCTGCAACGTGGTGGCGTGCGA GGGTTCCGACCGGATCGAACGGCACGAGACACTGACTCAGTGGCGAACCCGGTTCAACTCGGCTGGACTCTCTCCGGTTC ACCTCGGGTCCAACGCGTTCAAGCAAGCTAGCATGTTGTTGGCGCTTTTCGCCGGCGGCGACGGTTACAGAGTGGAGGAG AATAATGGGTGTCTTACTCTTGGTTGGCACACTAGGCCATTGATTGCCACCTCTGCGTGGCAACTCGCTTCTAATTCGGT GGCGACTCACTGATTCAACTCAGCTGAACTCAACTCAACTCGCATCCTAGCTTTTTTTTTTGGTAGTTTTTAATTTTAAT TTCAATTCATACCCATTATCAGAAAAGGAAAGCTAGAAGAAAAAAAAGTGAATTGTTGTGGGGTTGAGAACTGAGAAGAC AGTGTTCAAATGTGAAATGCTGAGCTGTGAGCACTAATTGATTGATGCCTGAAACATAGACCCACCAATGTCCATTTTCC TGTCCCAACTCATGTCTATGATTCATTTTCTCTGTTAATTTACCTTTTTTGGGTTAGGACTTTTCCTTTTCCTCTGTGCT CAACCATGAATTTTCTGGTTTTTTCTTTTGGGTTGGGTTGGAATCTCTTGTAATTTTTCAGGGTTAAGTACTCTAAAAAG GTTACTACTGCTGCTGTGTATTTATTTATCTATCTATCTATGCATGTTTTGAGTATATGAATTATGTAGCTTGGTGGTAA TAAATAGAATCTTGTTCCTTTTGAAAATTTGAAGCTGAGCCATCATTGTCAGCTTTGATAGAATTGGCATGACAGACAAG TTACCAAAATGGAGAATCAGCTCAAGAGTTGAGTGATTCAGCATCAAAATGGATGCAAATTACTGTAACTGCAACGATTA TTTTGGGTCCATAGCAAAAATTACTGCTGCGATTACAATCGAATCCACTTTTTTATGTCAGGGGTGGTACAGTATCACAG TGATCAGAAAGTGAAAAAAAGAAAGGAAGAAAAAAAGGGTTCACCCACTTTAATGTCATGATATGAACTTCTTCATAATA CTACTCCCCTGAAGAGTTTCACTTTTAAATGTTATTATTCCCATTGTAATTATTGTAGTACATGCACATTGCTTCCTTTT CCTTTTTCAAGTGTCAGTTTTTCTCTACCTTTGCTTCTGGGTTATAGTTATCTCTTCTCTGCCAATTTTTTCTGATTTTC TGTGTAATTTTAATATTTTATTCTTTGAATCTGGAAAAGTAGCCTAAAATGAAGCAGCATGCAGATTCTGGTCAAAGCAA AATCAAAATCTCCATTGACTTATTCTTTTTTTAAGTAAGTTGGTGATAAC
CDS sequence (LotjaGi4g1v0359300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGAGAGCACGAGCAAGTGAGTGGGAAGAGCTGGATGGGAGGCGGCGGTGTTTGGGAGGAGGAAGACGAGCTTCT CGCGGTGGTGGGTTACAAGGTGAGGTCATCAGACATGGCGGAAGTTGCTCAGAAGCTTGAGCAACTAGAAGAAGCCATGT CCGATGACACCATCGCTCACCACCTCTCATCAGATACCATCCACTTCAACCCCGCCGACATCGGCACATGGCTTGAAACC ATGCTCTCCAATTCCAATTTCGACCCCACTCCGGCAACCACCACCACCTCCGATTACGACGACCTCAAAGCCATTCCGGG AAGAGCAATCTACGCTCCTGATTCCCCTTCCTCCAGCAAACGCACCAAAACCTCCTCCTCTTCCTCCCCCTACGCCGAGT CGTCAACTCGCTCCGTCGTGGTTGTGGATTCCCAGGAGAACGGGATCCGGCTCGTGCACTCACTCATGGCCTGCGCGGAG GCTGTCGACCGGAGCAACCTCGCCGTCGCGGAGGCGCTGGTGAAGCAGATCGGACACCTCGCCGCGTCGCAAGAAGGCGC GATGAGGAAGGTCGCTACCTATTTCGCCGAAGGCCTTGCGAGAAGAATCTACGGCGTTTACCCTCCTCAGCCGCAGCAGC AGCAGCATTTCTTCTCCGATTCGCTCCAGATCCATTTCTACGAGACTTGCCCTTACCTCAAATTCGCTCACTTCACCGCC AATCAAGCAATCCTCGAAGCGTTTCAGGGAAAGGATCGTGTTCACGTCATCGATTTCGCCATCAACCAAGGGATGCAGTG GCCGGCGTTGATGCAAGCCCTCGCGCTTCGCCCCGGTGGTCCTCCCGCGTTCCGACTCACCGGAATCGGACCTCCGGCAC CAGACAACTCCGACCACCTCCAGCAGGTTGGGTGGAAGCTCGCTCAGCTGGCGGAAACCATCCACGTCCAGTTCGAGTAT CGCGGCTTCGTCGCCAACAGCCTCGCCGATCTCGACGCCTCCATGCTCGATCTCCGTCCGCCGGAGGAAGAATCCGTGGC CGTCAACTCCGTCTTCGAGCTCCACAAGCTGCTCGCGCGCCCCGGCGCGCTCGAGAAGGTCTTCTCTGTCATCCGGCAAG TCCAGCCGGAGATTCTCACCGTCGTGGAGCAGGAAGCTGGCCACAACGGCGCTAGTTTCCTAGACCGGTTCACTGAGTCG CTCCACTACTACTCAGCCCTCTTCGACTCGCTCGAAGGCTCCTCCGCCGTCGAGTCGCAGGACAAGGCCATGACGGAGAT CTACCTGGGGAAGCAAATCTGCAACGTGGTGGCGTGCGAGGGTTCCGACCGGATCGAACGGCACGAGACACTGACTCAGT GGCGAACCCGGTTCAACTCGGCTGGACTCTCTCCGGTTCACCTCGGGTCCAACGCGTTCAAGCAAGCTAGCATGTTGTTG GCGCTTTTCGCCGGCGGCGACGGTTACAGAGTGGAGGAGAATAATGGGTGTCTTACTCTTGGTTGGCACACTAGGCCATT GATTGCCACCTCTGCGTGGCAACTCGCTTCTAATTCGGTGGCGACTCACTGA
Protein sequence (LotjaGi4g1v0359300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKREHEQVSGKSWMGGGGVWEEEDELLAVVGYKVRSSDMAEVAQKLEQLEEAMSDDTIAHHLSSDTIHFNPADIGTWLET MLSNSNFDPTPATTTTSDYDDLKAIPGRAIYAPDSPSSSKRTKTSSSSSPYAESSTRSVVVVDSQENGIRLVHSLMACAE AVDRSNLAVAEALVKQIGHLAASQEGAMRKVATYFAEGLARRIYGVYPPQPQQQQHFFSDSLQIHFYETCPYLKFAHFTA NQAILEAFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQQVGWKLAQLAETIHVQFEY RGFVANSLADLDASMLDLRPPEEESVAVNSVFELHKLLARPGALEKVFSVIRQVQPEILTVVEQEAGHNGASFLDRFTES LHYYSALFDSLEGSSAVESQDKAMTEIYLGKQICNVVACEGSDRIERHETLTQWRTRFNSAGLSPVHLGSNAFKQASMLL ALFAGGDGYRVEENNGCLTLGWHTRPLIATSAWQLASNSVATH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 23 | 84 | 62 | 2.0E-26 | ||
| Pfam | 24 | 87 | 64 | 2.8E-29 | ||
| SMART | 24 | 95 | 72 | 1.3E-26 | – | |
| Coils | 39 | 59 | 21 | - | – | |
| PANTHER | 45 | 516 | 472 | 5.3E-191 | – | |
| PANTHER | 45 | 516 | 472 | 5.3E-191 | ||
| MobiDBLite | 109 | 137 | 29 | - | – | |
| MobiDBLite | 115 | 137 | 23 | - | – | |
| ProSiteProfiles | 142 | 514 | 373 | 101.386 | ||
| Pfam | 151 | 514 | 364 | 2.4E-137 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0359300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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